vOTU vOTU-084851

vOTU: vOTU-084851

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-084851
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-00131 → vSUBGEN-33702 → vOTU-084851
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0040483
Biosample ID	SAMEA4765847
Genome length (bp)	40,550 bps
CheckV completeness	99.42% (High-quality)
CDS count	66
CDS density	91.87%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	383	Host agreement	98.69
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0040483_2	phrog_119	56.7	3.3e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040483_2	UniRef90_A0A2A7B6I3	232.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0040483_2	610130.Closa_0739	108.0	6.3e-29	HNH nucleases	N/A
Pfam	UHGV-0040483_2	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0040483_2	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0040483_3	K00571	78.9	8e-23	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0040483_3	phrog_12862	150.7	4.2039e-45	N/A	unknown function
UniRef90	UHGV-0040483_3	UniRef90_UPI001EFC22B1	168.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0040483_3	1474867.A0A076FIB3_9PHYC	162.0	0	N-methyltransferase activity	N/A
PADLOC	UHGV-0040483_3	MTase_II_00037	160.1	0	Type II methyltransferase	RM
Pfam	UHGV-0040483_3	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0040483_3	PF01555,MF_01057,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040483_7	PF14354	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040483_8	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0040483_9	K03497	92.4	8.1e-27	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0040483_9	phrog_4715	119.6	2.3e-35	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040483_9	UniRef90_A0A2A7AMC5	302.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0040483_9	411471.SUBVAR_05842	180.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0040483_9	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0040483_9	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0040483_9	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0040483_10	K03496	203.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0040483_10	phrog_164	150.9	8.40779e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040483_10	UniRef90_A0A2A7B6H3	355.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040483_10	411471.SUBVAR_05839	227.0	0	AAA domain	N/A
Pfam	UHGV-0040483_10	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0040483_10	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0040483_10	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040483_12	748224.HMPREF9436_00735	155.0	1.14066e-42	N/A	N/A
Pfam	UHGV-0040483_12	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0040483_12	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0040483_12	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0040483_13	K03111	147.2	1.59748e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0040483_13	phrog_44	150.9	5.60519e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040483_13	UniRef90_A0A329TTF5	204.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0040483_13	748224.HMPREF9436_00638	210.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0040483_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0040483_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0040483_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0040483_13	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0040483_13	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_14	phrog_7566	83.5	1.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0040483_14	411471.SUBVAR_05830	105.0	4.53e-28	N/A	N/A
PHROG	UHGV-0040483_16	phrog_72	45.0	0.0000000000018	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0040483_16	411471.SUBVAR_05829	139.0	2.58e-39	N/A	N/A
structural_annotation	UHGV-0040483_16	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_17	phrog_14970	47.4	0.00000000000035	N/A	unknown function
COG	UHGV-0040483_17	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0040483_17	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040483_21	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040483_27	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0040483_28	UniRef90_A0A2A7AM72	104.0	4.87e-27	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0040483_28	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0040483_28	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0040483_30	PF06776,COG5342	N/A	N/A	N/A	N/A
KOfam	UHGV-0040483_31	K02342	80.6	1.7e-23	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0040483_31	phrog_192	91.7	6.6e-27	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0040483_31	UniRef90_A0A3N4GKD1	76.6	0.00000000000704	DNA polymerase III	N/A
eggNOG-mapper	UHGV-0040483_31	665956.HMPREF1032_02791	119.0	4.72e-27	N/A	N/A
PADLOC	UHGV-0040483_31	cd06127	72.3	1.4e-20	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0040483_31	PF00929	N/A	N/A	Exonuclease	RNase_T
COG	UHGV-0040483_31	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0040483_31	PF00929,PF00533,MF_00157,NF004844,COG0847	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_34	phrog_1373	43.2	0.000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-0040483_34	UniRef90_A0A2A7AM70	187.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0040483_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0040483_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0040483_34	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0040483_35	K14059	181.1	0	int; integrase	N/A
PHROG	UHGV-0040483_35	phrog_1	164.1	0	integrase	integration and excision
UniRef90	UHGV-0040483_35	UniRef90_A0A367GI93	223.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0040483_35	1507.HMPREF0262_00307	164.0	1.68156e-44	Phage integrase family	N/A
Pfam	UHGV-0040483_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0040483_35	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0040483_35	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040483_36	1408437.JNJN01000043_gene801	97.1	3.19e-22	N/A	N/A
eggNOG-mapper	UHGV-0040483_37	1408437.JNJN01000043_gene802	121.0	6.41e-34	N/A	N/A
PHROG	UHGV-0040483_38	phrog_16490	99.9	2.3e-37	N/A	unknown function
eggNOG-mapper	UHGV-0040483_38	1408437.JNJN01000043_gene803	162.0	0	N/A	N/A
UniRef90	UHGV-0040483_43	UniRef90_A0A1Q9JGI6	63.9	0.000000000246	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040483_43	1033733.CAEK01000007_gene1628	84.3	5.3e-19	N/A	N/A
Pfam	UHGV-0040483_43	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0040483_43	PF16734,PF01402	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_45	phrog_918	99.2	2e-29	N/A	unknown function
UniRef90	UHGV-0040483_45	UniRef90_UPI000EC62F11	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-0040483_45	411902.CLOBOL_05677	138.0	9.58068e-42	N/A	N/A
Pfam	UHGV-0040483_45	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0040483_45	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_46	phrog_15303	74.2	1.5e-21	N/A	unknown function
KOfam	UHGV-0040483_48	K07273	173.6	0	acm; lysozyme	N/A
PHROG	UHGV-0040483_48	phrog_291	131.3	8.8e-39	endolysin	lysis
UniRef90	UHGV-0040483_48	UniRef90_UPI001D0EE7D8	299.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0040483_48	748224.HMPREF9436_00154	285.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0040483_48	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0040483_48	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0040483_48	PF01183,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040483_50	272623.L66532	100.0	1.74e-19	N/A	N/A
PHROG	UHGV-0040483_52	phrog_1067	168.4	0	minor head protein	head and packaging
UniRef90	UHGV-0040483_52	UniRef90_A0A2A7AM44	702.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0040483_52	1123263.AUKY01000068_gene489	189.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0040483_52	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0040483_52	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0040483_52	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0040483_52	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_53	phrog_33	76.8	4.6e-22	distal tail protein Dit	tail
UniRef90	UHGV-0040483_53	UniRef90_A0A173Z1X4	142.0	3.87e-38	Phage-related protein	N/A
eggNOG-mapper	UHGV-0040483_53	748727.CLJU_c03670	92.0	9.5e-20	tail component	N/A
NCBIFam	UHGV-0040483_53	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0040483_53	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0040483_53	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_54	phrog_9959	90.5	9.8e-27	tail length tape measure protein	tail
UniRef90	UHGV-0040483_54	UniRef90_A0A2A7ALS3	806.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0040483_54	596328.HMPREF0578_1241	196.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0040483_54	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0040483_54	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0040483_54	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0040483_54	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_57	phrog_88	90.5	1.8e-26	major tail protein	tail
UniRef90	UHGV-0040483_57	UniRef90_UPI0018771F27	120.0	7.52e-31	phage tail protein	N/A
eggNOG-mapper	UHGV-0040483_57	349161.Dred_2600	60.1	0.0000000326	N/A	N/A
NCBIFam	UHGV-0040483_57	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0040483_57	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_58	phrog_5	48.7	0.000000000000052	tail completion or Neck1 protein	connector
UniRef90	UHGV-0040483_58	UniRef90_A0A1C6FG30	116.0	4.85e-30	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0040483_58	908340.HMPREF9406_2573	110.0	2.49e-28	N/A	N/A
structural_annotation	UHGV-0040483_58	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0040483_59	999413.HMPREF1094_02005	72.0	0.00000000000000624	N/A	N/A
structural_annotation	UHGV-0040483_59	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_60	phrog_19734	92.9	3.1e-27	N/A	unknown function
UniRef90	UHGV-0040483_60	UniRef90_A0A0D8I708	77.8	7.5e-16	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0040483_60	349161.Dred_2602	73.2	0.00000000000000773	N/A	N/A
structural_annotation	UHGV-0040483_60	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_61	phrog_749	53.9	0.0000000000000027	N/A	unknown function
UniRef90	UHGV-0040483_61	UniRef90_UPI00099504CB	52.8	0.00000103	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0040483_61	1211817.CCAT010000053_gene2133	68.9	0.0000000000000869	N/A	N/A
PHROG	UHGV-0040483_62	phrog_10	127.8	1.2e-37	major head protein	head and packaging
UniRef90	UHGV-0040483_62	UniRef90_A0A2A7B712	712.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0040483_62	1235792.C808_00086	432.0	0	Phage capsid family	N/A
Pfam	UHGV-0040483_62	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0040483_62	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0040483_62	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0040483_62	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0040483_62	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0040483_63	K01358	76.1	5.9e-22	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0040483_63	phrog_94	125.6	5.3e-37	head maturation protease	head and packaging
UniRef90	UHGV-0040483_63	UniRef90_UPI00111E41DA	131.0	3.17e-34	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0040483_63	1232452.BAIB02000007_gene1626	124.0	4.55e-32	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0040483_63	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0040483_63	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0040483_63	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_64	phrog_12	126.9	1.4e-37	portal protein	head and packaging
UniRef90	UHGV-0040483_64	UniRef90_A0A2A7B6S8	547.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0040483_64	349161.Dred_2606	262.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0040483_64	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0040483_64	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0040483_64	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0040483_64	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_65	phrog_9	239.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0040483_65	UniRef90_A0A2A7ALT4	1048.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0040483_65	610130.Closa_0741	633.0	0	Phage Terminase	N/A
Pfam	UHGV-0040483_65	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0040483_65	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0040483_65	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0040483_66	phrog_13845	54.7	0.0000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0040483_66	1399942.U3PDR2_9CAUD	64.3	0.0000000000127	N/A	N/A
structural_annotation	UHGV-0040483_66	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0040483	Yes	40,550	53	99	1
UHGV-0010423	No	40,534	53	99	1
UHGV-0022588	No	22,824	53	56	1