vOTU vOTU-085001

vOTU: vOTU-085001

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-085001
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00478 → vGENUS-00461 → vSUBGEN-27211 → vOTU-085001
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales
Host range breadth	Order
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2129946
Biosample ID	SAMEA3449289
Genome length (bp)	40,543 bps
CheckV completeness	96.70% (High-quality)
CDS count	62
CDS density	94.56%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	30	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	4	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2129946_1	phrog_10993	58.6	9.1e-17	Hoc-like head decoration	head and packaging
eggNOG-mapper	UHGV-2129946_1	742738.HMPREF9460_02534	74.3	0.0000000000000183	N/A	N/A
structural_annotation	UHGV-2129946_2	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-2129946_4	phrog_1357	269.4	0	major head protein	head and packaging
UniRef90	UHGV-2129946_4	UniRef90_UPI001D02EBA7	466.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-2129946_4	1203606.HMPREF1526_02746	360.0	0	N/A	N/A
Pfam	UHGV-2129946_4	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-2129946_4	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-2129946_4	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2129946_5	phrog_13908	240.0	0	N/A	unknown function
eggNOG-mapper	UHGV-2129946_5	1410650.JHWL01000003_gene2831	106.0	8.42e-24	N/A	N/A
KOfam	UHGV-2129946_6	K07584	51.6	0.000000000000011	N/A	N/A
PHROG	UHGV-2129946_6	phrog_4478	49.4	0.000000000000039	peptidase	other
UniRef90	UHGV-2129946_6	UniRef90_A0A7C6RDV5	63.2	0.000000000136	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-2129946_6	273068.TTE0914	60.8	0.000000000172	Cysteine protease Prp	N/A
Pfam	UHGV-2129946_6	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-2129946_6	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2129946_6	PF04327,NF011125,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-2129946_7	phrog_156	324.3	0	portal protein	head and packaging
UniRef90	UHGV-2129946_7	UniRef90_A0A8D9UH10	627.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-2129946_7	748224.HMPREF9436_02547	506.0	0	N/A	N/A
structural_annotation	UHGV-2129946_7	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-2129946_8	K06909	99.9	2.9e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2129946_8	phrog_979	201.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-2129946_8	UniRef90_UPI001D0245C4	753.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-2129946_8	748224.HMPREF9436_01395	644.0	0	Terminase-like family	N/A
Pfam	UHGV-2129946_8	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-2129946_8	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2129946_8	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-2129946_9	UniRef90_U2R3C0	181.0	0	Nascent polypeptide-associated complex domain protein	N/A
eggNOG-mapper	UHGV-2129946_9	1226322.HMPREF1545_00042	181.0	0	N/A	N/A
structural_annotation	UHGV-2129946_9	PF13542	N/A	N/A	N/A	N/A
PHROG	UHGV-2129946_12	phrog_8	44.1	0.0000000000045	transcriptional regulator	transcription regulation
UniRef90	UHGV-2129946_12	UniRef90_A0A1C6J963	109.0	7.58e-30	Helix-turn-helix	N/A
Pfam	UHGV-2129946_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2129946_12	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2129946_12	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2129946_13	K02647	56.3	4.2e-16	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-2129946_13	UniRef90_UPI00164DE10C	60.1	0.000000000139	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2129946_13	1301100.HG529387_gene5110	60.1	0.000000000847	Putative sugar diacid recognition	N/A
Pfam	UHGV-2129946_13	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-2129946_13	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-2129946_13	PF13556,TIGR00637,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-2129946_19	phrog_38832	55.6	3.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-2129946_19	665956.HMPREF1032_00143	61.2	0.00000000247	N/A	N/A
structural_annotation	UHGV-2129946_19	PF10781	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2129946_20	PF06657	N/A	N/A	N/A	N/A
KOfam	UHGV-2129946_26	K01160	60.1	6.2e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2129946_26	phrog_140	113.2	1.9e-33	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2129946_26	UniRef90_A0A843H433	114.0	3.6e-30	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2129946_26	1123263.AUKY01000072_gene2102	95.9	1.86e-23	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2129946_26	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2129946_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2129946_26	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2129946_28	PF21485	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2129946_30	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-2129946_31	K03111	152.0	5.60519e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2129946_31	phrog_44	151.4	4.2039e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2129946_31	UniRef90_A0A1C5QDM6	211.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2129946_31	1226322.HMPREF1545_04080	211.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-2129946_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2129946_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2129946_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2129946_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2129946_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2129946_32	phrog_7370	58.5	9.6e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2129946_32	UniRef90_UPI001C122365	134.0	1.25e-38	HNH endonuclease	N/A
Pfam	UHGV-2129946_32	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-2129946_33	phrog_72	67.6	1.5e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2129946_33	UniRef90_A0A8D9PDS2	177.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-2129946_33	445972.ANACOL_01825	156.0	0	N/A	N/A
structural_annotation	UHGV-2129946_33	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-2129946_34	phrog_7838	149.5	1.96182e-44	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2129946_34	UniRef90_A0A8D9UGW3	270.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-2129946_34	742767.HMPREF9456_02052	186.0	0	N/A	N/A
structural_annotation	UHGV-2129946_34	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-2129946_36	phrog_4973	42.3	0.000000000011	N/A	unknown function
Pfam	UHGV-2129946_36	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-2129946_36	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2129946_38	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-2129946_42	UniRef90_A0A7X9BRV4	53.1	0.000000227	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-2129946_42	411473.RUMCAL_01355	52.4	0.000000361	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2129946_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2129946_42	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-2129946_45	UniRef90_UPI0006850BB0	72.4	0.0000000000000308	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-2129946_45	742738.HMPREF9460_02485	50.4	0.00000148	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-2129946_45	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
Pfam	UHGV-2129946_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2129946_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2129946_47	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-2129946_48	K06400	268.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2129946_48	phrog_95	275.5	0	integrase	integration and excision
UniRef90	UHGV-2129946_48	UniRef90_A0A1C6HT72	379.0	0	Resolvase, N terminal domain	N/A
eggNOG-mapper	UHGV-2129946_48	357809.Cphy_2997	270.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-2129946_48	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2129946_48	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2129946_48	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2129946_48	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2129946_49	1408437.JNJN01000043_gene801	71.6	0.000000000000354	N/A	N/A
structural_annotation	UHGV-2129946_50	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-2129946_51	phrog_16490	63.6	4.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-2129946_51	476272.RUMHYD_01770	58.9	0.0000000604	N/A	N/A
PHROG	UHGV-2129946_52	phrog_22984	47.5	0.00000000000032	N/A	unknown function
UniRef90	UHGV-2129946_54	UniRef90_A0A8D9PDQ3	81.3	1.07e-18	ECF sigma factor	N/A
structural_annotation	UHGV-2129946_54	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-2129946_55	phrog_22978	1167.7	0	N/A	unknown function
UniRef90	UHGV-2129946_55	UniRef90_A0A1Y4WLF7	1072.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-2129946_55	1410650.JHWL01000003_gene2814	534.0	0	N/A	N/A
Pfam	UHGV-2129946_55	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
eggNOG-mapper	UHGV-2129946_56	1226322.HMPREF1545_00786	95.5	6.08e-18	N/A	N/A
Pfam	UHGV-2129946_57	PF07889	N/A	N/A	N/A	DUF1664
Pfam	UHGV-2129946_57	PF05377	N/A	N/A	Flagella accessory protein C (FlaC)	FlaC_arch
PHROG	UHGV-2129946_58	phrog_511	232.5	0	internal virion protein	head and packaging
UniRef90	UHGV-2129946_58	UniRef90_A0A8D9UH72	538.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-2129946_58	1226322.HMPREF1545_00785	347.0	0	N/A	N/A
structural_annotation	UHGV-2129946_58	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-2129946_59	phrog_12105	107.0	1.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-2129946_59	1226322.HMPREF1545_03850	71.2	0.0000000000000321	N/A	N/A
KOfam	UHGV-2129946_60	K08640	95.5	6.8e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-2129946_60	phrog_18955	148.8	2.52234e-44	N/A	unknown function
UniRef90	UHGV-2129946_60	UniRef90_UPI001C035E39	617.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-2129946_60	1235797.C816_04171	324.0	0	Peptidase M15	N/A
Pfam	UHGV-2129946_60	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-2129946_60	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-2129946_60	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2129946_60	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-2129946_61	phrog_199	88.2	7.9e-26	holin	lysis
UniRef90	UHGV-2129946_61	UniRef90_K1UL76	277.0	0	Holin, toxin secretion/phage lysis	N/A
eggNOG-mapper	UHGV-2129946_61	411467.BACCAP_00280	139.0	5.85e-40	Bacteriophage holin family	N/A
Pfam	UHGV-2129946_61	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2129946_61	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2129946_61	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2129946_61	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2129946	Yes	40,543	56	97	1
UHGV-0094239	No	17,689	56	42	1
UHGV-1617572	No	12,402	57	30	1
UHGV-0054629	No	11,114	54	26	1
UHGV-1672162	No	11,114	54	26	1
UHGV-1556191	No	10,112	58	24	1