vOTU vOTU-085042

vOTU: vOTU-085042

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-085042
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-00309 → vSUBGEN-16541 → vOTU-085042
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1341285
Biosample ID	SAMN00792005
Genome length (bp)	34,078 bps
CheckV completeness	92.05% (High-quality)
CDS count	48
CDS density	92.68%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	266	Host agreement	78.57
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	46	Host agreement	89.13

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1341285_1	1235799.C818_04237	80.9	1.58e-17	N/A	N/A
KOfam	UHGV-1341285_2	K06236	41.5	0.0000000000064	COL1A; collagen type I alpha	N/A
PHROG	UHGV-1341285_2	phrog_5073	64.6	1.2e-18	tail fiber protein	tail
UniRef90	UHGV-1341285_2	UniRef90_UPI001A9A6571	312.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1341285_2	553973.CLOHYLEM_06551	92.8	1.18e-18	to Mitochondrial intermediate peptidase K01410	N/A
Pfam	UHGV-1341285_2	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1341285_2	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
KOfam	UHGV-1341285_3	K16628	86.0	7.8e-26	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1341285_3	phrog_819	130.4	9.6e-40	tail protein	tail
UniRef90	UHGV-1341285_3	UniRef90_UPI0011C154AF	274.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1341285_3	290402.Cbei_3387	181.0	0	N/A	N/A
Pfam	UHGV-1341285_3	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1341285_4	phrog_16164	85.8	2.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-1341285_4	33035.JPJF01000093_gene2236	164.0	0	N/A	N/A
structural_annotation	UHGV-1341285_4	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_5	phrog_6320	42.0	0.00000000001	tail fiber protein	tail
UniRef90	UHGV-1341285_5	UniRef90_A0A374E9Q0	309.0	0	Collagen-like protein	N/A
eggNOG-mapper	UHGV-1341285_5	1232452.BAIB02000007_gene1610	60.8	0.0000000461	N/A	N/A
Pfam	UHGV-1341285_5	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1341285_5	PF10651,NF007636,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_6	phrog_14030	137.4	6.59998e-41	N/A	unknown function
UniRef90	UHGV-1341285_6	UniRef90_A0A844KDJ1	666.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-1341285_6	33035.JPJF01000093_gene2240	306.0	0	NlpC/P60 family	N/A
Pfam	UHGV-1341285_6	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-1341285_6	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-1341285_6	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1341285_6	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_7	phrog_13289	429.1	0	tail protein	tail
UniRef90	UHGV-1341285_7	UniRef90_A0A844KBR1	1212.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1341285_7	1235798.C817_02568	470.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1341285_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1341285_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1341285_7	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-1341285_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1341285_8	UniRef90_A0A844KEE5	276.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1341285_8	1235798.C817_02569	142.0	1.57e-40	tail component	N/A
COG	UHGV-1341285_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
PHROG	UHGV-1341285_10	phrog_1272	216.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1341285_10	UniRef90_UPI0006C3C180	1164.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1341285_10	1035184.HMPREF1042_1328	312.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-1341285_10	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1341285_10	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1341285_10	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-1341285_13	phrog_88	93.8	1.7e-27	major tail protein	tail
UniRef90	UHGV-1341285_13	UniRef90_UPI0006C1EB28	405.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1341285_13	1033737.CAEV01000029_gene288	58.9	0.0000000401	N/A	N/A
Pfam	UHGV-1341285_13	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-1341285_13	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1341285_13	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_14	phrog_5	51.2	0.00000000000003	tail completion or Neck1 protein	connector
UniRef90	UHGV-1341285_14	UniRef90_D4M595	189.0	0	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-1341285_14	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341285_15	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1341285_16	UniRef90_A0A844KCF4	229.0	0	Phage head closure protein	N/A
NCBIFam	UHGV-1341285_16	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1341285_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_18	phrog_10	83.1	2.1e-24	major head protein	head and packaging
UniRef90	UHGV-1341285_18	UniRef90_A0A844KDK0	729.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1341285_18	1232452.BAIB02000007_gene1625	454.0	0	Phage capsid family	N/A
Pfam	UHGV-1341285_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1341285_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1341285_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1341285_18	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1341285_19	K01358	113.7	2.1e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1341285_19	phrog_94	177.8	0	head maturation protease	head and packaging
UniRef90	UHGV-1341285_19	UniRef90_D4M590	487.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1341285_19	1235792.C808_00085	207.0	0	Clp protease	N/A
Pfam	UHGV-1341285_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1341285_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1341285_19	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_20	phrog_12	75.5	4.8e-22	portal protein	head and packaging
UniRef90	UHGV-1341285_20	UniRef90_A0A844KEF3	435.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1341285_20	1232452.BAIB02000007_gene1627	264.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1341285_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1341285_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1341285_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_21	phrog_9	222.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1341285_21	UniRef90_D4M588	769.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-1341285_21	1232452.BAIB02000007_gene1629	503.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1341285_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1341285_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1341285_21	PF20441,MF_04147,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_22	phrog_5110	98.2	4.8e-29	terminase small subunit	head and packaging
UniRef90	UHGV-1341285_22	UniRef90_A0A1C5LZF0	102.0	6.54e-26	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1341285_22	1220589.CD32_01745	61.6	0.000000000222	Phage terminase, small subunit	N/A
Pfam	UHGV-1341285_22	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1341285_22	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1341285_22	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_23	phrog_119	69.7	4.2e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341285_23	UniRef90_D4M587	268.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1341285_23	1232452.BAIB02000007_gene1631	85.5	1.21e-19	HNH nucleases	N/A
COG	UHGV-1341285_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1341285_23	PF09889,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_24	phrog_36	89.1	4.8e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-1341285_24	UniRef90_UPI001899709D	223.0	0	N/A	N/A
eggNOG-mapper	UHGV-1341285_24	658655.HMPREF0988_02569	218.0	0	sigma factor activity	N/A
Pfam	UHGV-1341285_24	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1341285_24	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1341285_24	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-1341285_28	K04763	203.0	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1341285_28	phrog_1	171.2	0	integrase	integration and excision
UniRef90	UHGV-1341285_28	UniRef90_A0A3D2TUS5	352.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1341285_28	1514668.JOOA01000001_gene378	207.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1341285_28	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1341285_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1341285_28	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1341285_28	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1341285_29	K03427	42.2	0.0000000000097	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1341285_29	phrog_5696	200.4	0	N/A	unknown function
UniRef90	UHGV-1341285_29	UniRef90_A0A1C5WE14	259.0	0	Type I restriction-modification system methyltransferase subunit	N/A
eggNOG-mapper	UHGV-1341285_29	1245471.PCA10_p0930	130.0	3.26e-34	N-6 DNA Methylase	N/A
Pfam	UHGV-1341285_29	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1341285_29	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1341285_29	COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_31	phrog_7566	112.9	1.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-1341285_31	665950.HMPREF1025_02547	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-1341285_32	1196322.A370_05726	65.9	0.000000000000582	N/A	N/A
PHROG	UHGV-1341285_33	phrog_15077	94.7	1.7e-27	N/A	unknown function
UniRef90	UHGV-1341285_33	UniRef90_A0A3A6HZA9	234.0	0	N/A	N/A
eggNOG-mapper	UHGV-1341285_33	1280698.AUJS01000007_gene1019	372.0	0	N/A	N/A
structural_annotation	UHGV-1341285_33	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_34	phrog_8470	230.2	0	N/A	unknown function
UniRef90	UHGV-1341285_34	UniRef90_UPI001C01E393	587.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1341285_34	1280698.AUJS01000007_gene1018	853.0	0	N/A	N/A
Pfam	UHGV-1341285_34	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1341285_34	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_35	phrog_4433	68.3	1e-23	N/A	unknown function
eggNOG-mapper	UHGV-1341285_35	1280698.AUJS01000007_gene1017	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-1341285_36	1280698.AUJS01000007_gene1016	231.0	0	N/A	N/A
KOfam	UHGV-1341285_37	K03469	65.0	1.6e-18	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1341285_37	phrog_531	66.8	3.6e-19	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1341285_37	UniRef90_D4M578	289.0	0	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-1341285_37	665950.HMPREF1025_02551	153.0	1.4013e-45	RNase H	N/A
Pfam	UHGV-1341285_37	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1341285_37	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1341285_37	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_38	phrog_3584	153.9	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1341285_38	665950.HMPREF1025_02552	316.0	0	N/A	N/A
structural_annotation	UHGV-1341285_38	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_42	phrog_32192	112.0	1.9e-33	N/A	unknown function
KOfam	UHGV-1341285_44	K18830	69.4	5.9e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1341285_44	phrog_2967	52.9	0.0000000000000062	transcriptional regulator	transcription regulation
UniRef90	UHGV-1341285_44	UniRef90_D4M569	236.0	0	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-1341285_44	1280698.AUJS01000007_gene1002	127.0	8.59e-36	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1341285_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1341285_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1341285_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1341285_46	K10716	135.3	4.9e-40	kch, trkA, mthK, pch; voltage-gated potassium channel	N/A
PHROG	UHGV-1341285_46	phrog_7872	198.7	0	N/A	unknown function
UniRef90	UHGV-1341285_46	UniRef90_D4M567	451.0	0	Ion channel	N/A
eggNOG-mapper	UHGV-1341285_46	411459.RUMOBE_00964	274.0	0	Ion channel	N/A
Pfam	UHGV-1341285_46	PF07885	N/A	N/A	Ion channel	Ion_trans_2
COG	UHGV-1341285_46	COG1226	N/A	N/A	Voltage-gated potassium channel Kch	N/A
structural_annotation	UHGV-1341285_46	PF07885,NF040645	N/A	N/A	N/A	N/A
PHROG	UHGV-1341285_47	phrog_10934	108.8	2.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-1341285_47	742722.HMPREF9463_00385	110.0	4.04e-26	N/A	N/A
KOfam	UHGV-1341285_48	K06400	249.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1341285_48	phrog_95	262.5	0	integrase	integration and excision
UniRef90	UHGV-1341285_48	UniRef90_A0A374E9M4	1014.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1341285_48	97139.C824_00068	710.0	0	Recombinase	N/A
Pfam	UHGV-1341285_48	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1341285_48	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1341285_48	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1341285_48	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1341285	Yes	34,078	43	92	1
UHGV-1435819	No	17,682	43	50	1