vOTU vOTU-085090

vOTU: vOTU-085090

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-085090
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00135 → vSUBFAM-00506 → vGENUS-06681 → vSUBGEN-40306 → vOTU-085090
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → UBA5026 → UBA5026 sp900552335
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0005741
Biosample ID	N/A
Genome length (bp)	49,520 bps
CheckV completeness	99.90% (High-quality)
CDS count	77
CDS density	86.73%
tRNA count	8
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660	Total connections	9	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → UBA5026 → UBA5026 sp900552335	Total connections	16	Host agreement	81.25

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0005741_1	UniRef90_A0A372SGU9	101.0	8.17e-23	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0005741_1	1347087.CBYO010000011_gene1802	80.9	0.00000000000000863	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-0005741_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0005741_3	508419.F8J177_9CAUD	51.2	0.00000078	N/A	N/A
structural_annotation	UHGV-0005741_4	PF07041	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_5	phrog_372	102.5	4.9e-30	tail protein	tail
eggNOG-mapper	UHGV-0005741_5	1308863.U5J9V2_9CAUD	65.1	0.000000126	N/A	N/A
Pfam	UHGV-0005741_5	PF00041	N/A	N/A	Fibronectin type III domain	fn3
PHROG	UHGV-0005741_6	phrog_6616	58.5	6.9e-17	tail protein	tail
eggNOG-mapper	UHGV-0005741_6	658659.HMPREF0983_03295	86.7	0.0000000000000113	N/A	N/A
structural_annotation	UHGV-0005741_7	PF20458,TIGR01633,COG4718	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005741_8	PF06998,MF_00434,NF041193,COG4808	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_9	phrog_1535	108.0	7.7e-34	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0005741_9	1121866.AUGK01000003_gene1437	141.0	4.28e-31	phage tail tape measure protein	N/A
COG	UHGV-0005741_9	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0005741_9	PF20155	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0005741_11	1121333.JMLH01000047_gene1012	50.8	0.0000013	N/A	N/A
Pfam	UHGV-0005741_11	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0005741_11	PF16478	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005741_12	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005741_13	PF08873,COG5003	N/A	N/A	N/A	N/A
UniRef90	UHGV-0005741_14	UniRef90_UPI001D096349	80.1	8.16e-16	HK97 gp10 family phage protein	N/A
structural_annotation	UHGV-0005741_14	PF17395,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005741_16	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005741_17	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_18	phrog_1328	137.8	5.49996e-41	major head protein	head and packaging
UniRef90	UHGV-0005741_18	UniRef90_UPI00164DD2D5	350.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005741_18	1203606.HMPREF1526_00325	213.0	0	N/A	N/A
Pfam	UHGV-0005741_18	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0005741_18	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005741_19	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_20	phrog_64	157.6	0	portal protein	head and packaging
UniRef90	UHGV-0005741_20	UniRef90_UPI001D06C00B	322.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0005741_20	1121866.AUGK01000003_gene1429	273.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0005741_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0005741_20	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_21	phrog_38	209.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0005741_21	UniRef90_UPI00115B4A11	112.0	1.32e-22	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0005741_21	428127.EUBDOL_01551	244.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0005741_21	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0005741_21	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005741_21	PF17289,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005741_22	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_25	phrog_20735	196.9	0	N/A	unknown function
UniRef90	UHGV-0005741_25	UniRef90_R5A140	350.0	0	RNA_ligase domain-containing protein	N/A
Pfam	UHGV-0005741_25	PF09414	N/A	N/A	RNA ligase	RNA_ligase
structural_annotation	UHGV-0005741_25	PF09414,MF_04150,TIGR01209,COG1423	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005741_27	PF01381	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0005741_28	537007.BLAHAN_06602	72.4	5.25e-16	N/A	N/A
PHROG	UHGV-0005741_31	phrog_3502	49.0	0.00000000000012	N/A	unknown function
UniRef90	UHGV-0005741_31	UniRef90_A0A7X1ZQR6	53.1	0.000000134	Repressor LexA (Fragment)	N/A
eggNOG-mapper	UHGV-0005741_31	521460.Athe_2440	52.4	0.0000000358	domain protein	N/A
Pfam	UHGV-0005741_31	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0005741_31	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0005741_31	PF01726,MF_00732,NF006812,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0005741_32	K14415	333.9	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-0005741_32	phrog_1075	436.4	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005741_32	UniRef90_A0A843GTF7	488.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-0005741_32	397290.C810_01387	477.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-0005741_32	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-0005741_32	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-0005741_32	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_33	phrog_98	87.4	1.4e-25	N/A	unknown function
UniRef90	UHGV-0005741_33	UniRef90_UPI0009701180	89.7	1.19e-20	YopX family protein	N/A
eggNOG-mapper	UHGV-0005741_33	619693.HMPREF6745_2499	75.1	8.05e-16	YopX protein	N/A
Pfam	UHGV-0005741_33	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0005741_33	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0005741_33	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0005741_36	PF05732,MF_01177,TIGR01610,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_39	phrog_478	127.8	4.2e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0005741_39	UniRef90_A0A376GT60	111.0	4.36e-29	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0005741_39	324057.Pjdr2_1537	103.0	1.2e-26	N/A	N/A
KOfam	UHGV-0005741_46	K03111	87.0	3.5e-25	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0005741_46	phrog_44	93.2	3.9e-27	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005741_46	UniRef90_R5ITS9	139.0	1.05001e-40	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0005741_46	1403313.AXBR01000026_gene5185	108.0	5.09e-29	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0005741_46	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0005741_46	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0005741_46	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0005741_46	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0005741_46	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0005741_52	K14060	76.2	5.2e-22	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0005741_52	phrog_125	114.1	1.2e-33	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005741_52	UniRef90_UPI00189A4482	115.0	8.41e-28	recombinase family protein	N/A
eggNOG-mapper	UHGV-0005741_52	999411.HMPREF1092_03337	103.0	3.59e-24	PFAM Resolvase	N/A
Pfam	UHGV-0005741_52	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0005741_52	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0005741_52	PF00239,NF009949,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0005741_57	K01160	51.6	0.000000000000028	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0005741_57	phrog_140	133.1	1.5e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005741_57	UniRef90_A0A7G9GLS4	115.0	3.41e-30	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0005741_57	1095750.HMPREF9970_1673	107.0	6.23e-28	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0005741_57	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0005741_57	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0005741_57	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0005741_61	K03111	122.1	7.7e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0005741_61	phrog_44	120.5	1.5e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005741_61	UniRef90_A0A7C6RRS0	124.0	1.8e-33	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0005741_61	445973.CLOBAR_02470	111.0	1.25e-29	single-stranded DNA binding	N/A
Pfam	UHGV-0005741_61	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0005741_61	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0005741_61	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0005741_61	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0005741_61	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_64	phrog_6077	262.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0005741_64	1395516.PMO01_17415	157.0	1.26005e-41	N/A	N/A
structural_annotation	UHGV-0005741_64	PF02518,MF_00505,NF003555,COG0326	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_66	phrog_2139	163.9	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005741_66	UniRef90_W4V8L9	281.0	0	N/A	N/A
eggNOG-mapper	UHGV-0005741_66	428127.EUBDOL_01249	247.0	0	N/A	N/A
structural_annotation	UHGV-0005741_66	PF12705,MF_03030,TIGR04328,COG2251	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_67	phrog_799	106.8	1.9e-31	DNA methyltransferase	other
UniRef90	UHGV-0005741_67	UniRef90_A0A7C0U269	194.0	0	tRNA (Adenine-N(6)-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0005741_67	407392.A0MN47_9CAUD	172.0	0	methyltransferase activity	N/A
structural_annotation	UHGV-0005741_67	PF13651,MF_00607,NF000077,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_68	phrog_14970	209.9	0	N/A	unknown function
UniRef90	UHGV-0005741_68	UniRef90_A0A1C5NV07	163.0	0	DNA damage response protein A	N/A
eggNOG-mapper	UHGV-0005741_68	1128398.Curi_c14240	168.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0005741_68	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0005741_68	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0005741_68	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0005741_71	K17680	129.3	2.3e-38	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0005741_71	phrog_19	106.5	2.8e-31	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005741_71	UniRef90_A0A449R130	104.0	1.1e-20	DNA helicase	N/A
eggNOG-mapper	UHGV-0005741_71	1232453.BAIF02000057_gene1145	80.1	0.000000000000378	DNA replication initiation	N/A
Pfam	UHGV-0005741_71	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0005741_71	COG1241	N/A	N/A	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	N/A
structural_annotation	UHGV-0005741_71	PF03796,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0005741_72	phrog_428	79.7	5e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0005741_72	UniRef90_A0A2G6ANU5	57.0	0.00000748	Replication protein	N/A
eggNOG-mapper	UHGV-0005741_72	797515.HMPREF9103_02423	59.7	0.000000156	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0005741_72	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
COG	UHGV-0005741_72	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
KOfam	UHGV-0005741_74	K22299	40.7	0.000000000051	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0005741_74	UniRef90_A0A1Q8QW35	50.4	0.00000253	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0005741_74	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0005741_74	COG0662	N/A	N/A	Mannose-6-phosphate isomerase, cupin superfamily	N/A
structural_annotation	UHGV-0005741_74	PF01381,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0005741_75	K22299	64.8	1.8e-18	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0005741_75	phrog_8	79.9	4.6e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0005741_75	UniRef90_A0A4R2L8R4	80.1	4.45e-17	Transcriptional regulator with XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0005741_75	1286171.EAL2_c10810	76.6	1.7e-16	PFAM helix-turn-helix domain protein	N/A
PADLOC	UHGV-0005741_75	retron_type_VI_hth_cluster2_1	44.9	0.0000000000025	N/A	Retron
Pfam	UHGV-0005741_75	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0005741_75	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0005741_75	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0005741_77	K14059	144.9	1.10002e-42	int; integrase	N/A
PHROG	UHGV-0005741_77	phrog_1	149.0	3.78351e-44	integrase	integration and excision
UniRef90	UHGV-0005741_77	UniRef90_A0A843GV89	132.0	1.4e-31	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0005741_77	1122173.AXVL01000004_gene783	105.0	2.75e-22	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0005741_77	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0005741_77	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0005741_77	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0005741	Yes	49,520	27	100	1
UHGV-0007759	No	28,627	28	60	1