vOTU vOTU-085250

vOTU: vOTU-085250

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-085250
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → Flemingibacterium → ERR7738582_bin.204
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00753 → vGENUS-05764 → vSUBGEN-17513 → vOTU-085250
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-382 → Woodwardibium → Woodwardibium sp900754535
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0013673
Biosample ID	SAMEA11460267
Genome length (bp)	37,171 bps
CheckV completeness	93.18% (High-quality)
CDS count	53
CDS density	94.00%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-382 → Woodwardibium → Woodwardibium sp900754535	Total connections	1	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → Flemingibacterium → ERR7738582_bin.204	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0013673_1	phrog_7974	46.1	0.00000000000039	N/A	unknown function
eggNOG-mapper	UHGV-0013673_1	1321782.HMPREF1986_02240	67.4	0.000000000154	N/A	N/A
PHROG	UHGV-0013673_2	phrog_87	106.2	1.8e-31	metallo-protease	other
UniRef90	UHGV-0013673_2	UniRef90_UPI00195F0689	140.0	2.76e-40	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0013673_2	574375.BAGA_00350	116.0	1.74e-31	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0013673_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0013673_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0013673_2	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0013673_3	K22299	66.3	5.8e-19	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0013673_3	phrog_8	87.7	1.5e-25	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013673_3	UniRef90_UPI00162473E5	135.0	7.96e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0013673_3	1401067.HMPREF0872_00465	124.0	1.67e-34	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0013673_3	retron_type_VI_hth_cluster2_1	50.3	0.000000000000039	N/A	Retron
Pfam	UHGV-0013673_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0013673_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0013673_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0013673_4	K21686	62.6	4.2e-18	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	N/A
PHROG	UHGV-0013673_4	phrog_7241	56.2	5.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013673_4	UniRef90_F1TFL8	68.6	0.00000000000012	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0013673_4	588581.Cpap_1289	68.6	0.0000000000000201	PFAM helix-turn-helix domain protein	N/A
PADLOC	UHGV-0013673_4	retron_type_VI_hth_cluster2_1	47.8	0.00000000000039	N/A	Retron
Pfam	UHGV-0013673_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0013673_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0013673_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_6	phrog_15742	43.9	0.0000000000043	N/A	unknown function
eggNOG-mapper	UHGV-0013673_6	1378168.N510_02487	135.0	1.8e-37	N/A	N/A
PHROG	UHGV-0013673_7	phrog_24326	40.5	0.000000000035	N/A	unknown function
PHROG	UHGV-0013673_8	phrog_130	160.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0013673_8	UniRef90_UPI0009C2C388	169.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0013673_8	1391647.AVSV01000003_gene1780	155.0	3.08286e-44	Phage antirepressor protein	N/A
Pfam	UHGV-0013673_8	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0013673_8	COG3617	N/A	N/A	Prophage antirepressor	N/A
KOfam	UHGV-0013673_12	K03546	59.0	5.7e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0013673_12	phrog_1499	473.8	0	N/A	unknown function
UniRef90	UHGV-0013673_12	UniRef90_A0A3D5UF12	523.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0013673_12	394503.Ccel_3310	504.0	0	domain protein	N/A
Pfam	UHGV-0013673_12	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0013673_12	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0013673_12	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_13	phrog_124	226.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013673_13	UniRef90_UPI001896F7FA	382.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0013673_13	1232449.BAHV02000018_gene1547	379.0	0	AAA domain	N/A
Pfam	UHGV-0013673_13	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0013673_13	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_14	phrog_2698	170.5	0	N/A	unknown function
UniRef90	UHGV-0013673_14	UniRef90_A0A6A7K9A2	174.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013673_14	645991.Sgly_0322	164.0	0	N/A	N/A
structural_annotation	UHGV-0013673_14	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-0013673_15	K17677	339.3	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0013673_15	phrog_16	279.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013673_15	UniRef90_UPI001E556C58	810.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0013673_15	1235792.C808_05388	793.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0013673_15	mREase_IV_00005	139.8	2.20004e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0013673_15	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0013673_15	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0013673_15	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0013673_15	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_16	phrog_374	162.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013673_16	UniRef90_A0A380IPI2	147.0	2.12002e-41	AP2 domain protein	N/A
eggNOG-mapper	UHGV-0013673_16	645991.Sgly_0324	138.0	9.24e-39	N/A	N/A
structural_annotation	UHGV-0013673_16	PF17375	N/A	N/A	N/A	N/A
KOfam	UHGV-0013673_17	K07505	407.9	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0013673_17	phrog_2597	1125.6	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013673_17	UniRef90_A0A415Z142	967.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0013673_17	610130.Closa_1370	934.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0013673_17	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0013673_17	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0013673_17	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0013673_17	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0013673_18	K01160	48.3	0.00000000000026	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0013673_18	phrog_140	87.7	1.5e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013673_18	UniRef90_R9C6Q9	160.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0013673_18	608534.GCWU000341_02308	151.0	1.4013e-45	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0013673_18	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0013673_18	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0013673_18	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
Pfam	UHGV-0013673_20	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
dbAPIS	UHGV-0013673_20	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
PHROG	UHGV-0013673_26	phrog_36	56.1	7.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013673_26	UniRef90_UPI001D05F87A	89.7	1.8e-20	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0013673_26	1304880.JAGB01000002_gene2225	67.4	0.00000000000239	N/A	N/A
structural_annotation	UHGV-0013673_26	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0013673_27	K07474	137.3	1.6e-40	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0013673_27	phrog_51	122.1	1.1e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0013673_27	UniRef90_A0A372V657	125.0	6.09e-34	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0013673_27	1321778.HMPREF1982_02686	117.0	1.46e-31	Terminase Small Subunit	N/A
Pfam	UHGV-0013673_27	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0013673_27	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0013673_27	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0013673_28	K06909	75.3	8.2e-22	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0013673_28	phrog_2	91.6	1.5e-26	terminase large subunit	head and packaging
UniRef90	UHGV-0013673_28	UniRef90_UPI00189AB5B3	561.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0013673_28	1304866.K413DRAFT_3034	478.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0013673_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0013673_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-0013673_29	phrog_533	298.5	0	portal protein	head and packaging
UniRef90	UHGV-0013673_29	UniRef90_UPI00189C53D6	466.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0013673_29	1304866.K413DRAFT_3035	413.0	0	N/A	N/A
structural_annotation	UHGV-0013673_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_30	phrog_581	280.0	0	minor head protein	head and packaging
UniRef90	UHGV-0013673_30	UniRef90_UPI001570CBC5	486.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0013673_30	428127.EUBDOL_01227	301.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0013673_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0013673_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013673_30	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_32	phrog_194	102.5	4.6e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0013673_32	UniRef90_A0A2N0ULW9	198.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0013673_32	999413.HMPREF1094_00216	107.0	9.84e-27	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0013673_32	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0013673_32	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_33	phrog_422	236.8	0	major head protein	head and packaging
UniRef90	UHGV-0013673_33	UniRef90_W0U896	360.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0013673_33	693746.OBV_18090	387.0	0	N/A	N/A
structural_annotation	UHGV-0013673_33	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_34	phrog_541	46.9	0.0000000000004	head-tail adaptor	connector
UniRef90	UHGV-0013673_34	UniRef90_A0A371AQT0	90.1	4.88e-21	N/A	N/A
eggNOG-mapper	UHGV-0013673_34	411902.CLOBOL_00133	70.1	0.0000000000000616	N/A	N/A
PHROG	UHGV-0013673_35	phrog_3366	42.3	0.0000000000026	N/A	unknown function
Pfam	UHGV-0013673_35	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0013673_35	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_36	phrog_556	114.1	5.9e-34	minor head protein	head and packaging
UniRef90	UHGV-0013673_36	UniRef90_UPI001B3C5A2B	169.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0013673_36	1449050.JNLE01000003_gene3886	129.0	2.69e-36	N/A	N/A
Pfam	UHGV-0013673_36	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0013673_36	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_37	phrog_3266	102.0	3.9e-30	tail completion	connector
eggNOG-mapper	UHGV-0013673_37	1449050.JNLE01000003_gene3885	126.0	3.68e-35	N/A	N/A
structural_annotation	UHGV-0013673_37	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_38	phrog_3099	150.4	7.00649e-45	N/A	unknown function
eggNOG-mapper	UHGV-0013673_38	1304866.K413DRAFT_3043	195.0	0	N/A	N/A
structural_annotation	UHGV-0013673_38	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_39	phrog_11299	113.5	1.4e-33	N/A	unknown function
eggNOG-mapper	UHGV-0013673_39	1449050.JNLE01000003_gene3883	91.3	1.23e-21	N/A	N/A
structural_annotation	UHGV-0013673_39	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_40	phrog_706	128.1	5.6e-38	N/A	unknown function
UniRef90	UHGV-0013673_40	UniRef90_UPI001B3C82AE	182.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0013673_40	1449050.JNLE01000003_gene3882	174.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0013673_40	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0013673_40	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_41	phrog_1535	134.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0013673_41	UniRef90_R6TDK7	190.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0013673_41	1160721.RBI_II00528	332.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0013673_41	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
eggNOG-mapper	UHGV-0013673_42	693746.OBV_18200	105.0	1.2e-27	N/A	N/A
structural_annotation	UHGV-0013673_42	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_43	phrog_13879	203.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0013673_43	411902.CLOBOL_00124	305.0	0	N/A	N/A
structural_annotation	UHGV-0013673_43	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_44	phrog_18725	64.1	2.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0013673_44	756499.Desde_2424	98.6	2.71e-24	N/A	N/A
PHROG	UHGV-0013673_46	phrog_863	66.9	4.9e-19	tail fiber assembly	tail
Pfam	UHGV-0013673_46	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0013673_46	PF21722	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_48	phrog_18593	40.9	0.000000000027	N/A	unknown function
UniRef90	UHGV-0013673_48	UniRef90_R6I1X1	113.0	1.29e-29	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	N/A
eggNOG-mapper	UHGV-0013673_48	1232449.BAHV02000010_gene2734	73.6	0.0000000000000153	N/A	N/A
KOfam	UHGV-0013673_50	K07273	163.8	0	acm; lysozyme	N/A
PHROG	UHGV-0013673_50	phrog_291	130.0	2.2e-38	endolysin	lysis
UniRef90	UHGV-0013673_50	UniRef90_A0A0K9N912	117.0	4.15e-27	Putative endolysin	N/A
eggNOG-mapper	UHGV-0013673_50	537007.BLAHAN_06873	100.0	2.19e-21	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0013673_50	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0013673_50	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0013673_50	PF01183,MF_02227,TIGR04303,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0013673_51	phrog_15303	53.8	0.000000000000003	N/A	unknown function
PHROG	UHGV-0013673_52	phrog_5763	114.5	9.8e-34	N/A	unknown function
UniRef90	UHGV-0013673_52	UniRef90_A0A377JV05	94.7	3.61e-19	V-SNARE coiled-coil homology domain-containing protein	N/A
eggNOG-mapper	UHGV-0013673_52	613026.HRAG_00945	89.4	8.7e-18	N/A	N/A
PHROG	UHGV-0013673_53	phrog_1281	112.9	2e-33	N/A	unknown function
UniRef90	UHGV-0013673_53	UniRef90_A0A417A414	190.0	0	N/A	N/A
eggNOG-mapper	UHGV-0013673_53	1000569.HMPREF1040_1612	149.0	2.52234e-44	N/A	N/A
Pfam	UHGV-0013673_53	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0013673_53	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013673_53	PF13274,COG3600	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0013673	Yes	37,171	55	93	1