vOTU vOTU-085274

vOTU: vOTU-085274

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-085274
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-01788 → vSUBGEN-31692 → vOTU-085274
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1420162
Biosample ID	SAMEA2042555
Genome length (bp)	35,963 bps
CheckV completeness	97.59% (High-quality)
CDS count	54
CDS density	92.74%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	917	Host agreement	86.26
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	202	Host agreement	96.53

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1420162_1	556268.OFAG_00841	50.1	0.00000344	RecT family	N/A
COG	UHGV-1420162_1	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
KOfam	UHGV-1420162_2	K06167	53.2	0.0000000000000043	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1420162_2	phrog_392	125.3	5.5e-37	metal-dependent hydrolase	other
UniRef90	UHGV-1420162_2	UniRef90_A0A373XYI8	349.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1420162_2	665956.HMPREF1032_03101	156.0	5.60519e-45	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1420162_2	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1420162_2	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1420162_2	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_3	phrog_398	208.2	0	N/A	unknown function
UniRef90	UHGV-1420162_3	UniRef90_UPI000C7B20DA	192.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1420162_3	293826.Amet_2584	176.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1420162_3	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1420162_3	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_4	phrog_2562	138.5	5.40004e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420162_4	UniRef90_A0A374NA85	322.0	0	N/A	N/A
eggNOG-mapper	UHGV-1420162_4	1235790.C805_00030	146.0	1.71e-39	N/A	N/A
Pfam	UHGV-1420162_4	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1420162_4	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1420162_4	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-1420162_5	K02315	129.4	3.3e-38	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1420162_5	phrog_50	127.9	8.7e-38	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420162_5	UniRef90_A0A374UPV4	487.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-1420162_5	445972.ANACOL_01829	202.0	0	N/A	N/A
Pfam	UHGV-1420162_5	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1420162_5	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1420162_5	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-1420162_6	K01160	51.3	0.000000000000034	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1420162_6	phrog_140	98.3	7.8e-29	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420162_6	UniRef90_A0A374US90	214.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1420162_6	411462.DORLON_00806	186.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1420162_6	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1420162_6	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1420162_6	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420162_7	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420162_8	PF02796,NF008548	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_9	phrog_323	71.6	8e-28	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420162_9	UniRef90_UPI001C01CFF8	311.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1420162_9	756499.Desde_1065	353.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-1420162_9	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1420162_9	PF11112,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_10	phrog_2118	120.4	1.5e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420162_10	UniRef90_R6QZD0	218.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1420162_10	610130.Closa_0730	160.0	0	HNH endonuclease	N/A
Pfam	UHGV-1420162_10	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1420162_10	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1420162_10	PF13395,TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_12	phrog_25754	65.4	3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1420162_12	97139.C824_00736	66.2	0.00000000000128	N/A	N/A
structural_annotation	UHGV-1420162_12	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1420162_15	1540257.JQMW01000004_gene433	50.4	0.00000365	N/A	N/A
structural_annotation	UHGV-1420162_15	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_16	phrog_8680	257.5	0	N/A	unknown function
UniRef90	UHGV-1420162_16	UniRef90_A0A373KTP5	416.0	0	N/A	N/A
eggNOG-mapper	UHGV-1420162_16	411470.RUMGNA_02208	262.0	0	N/A	N/A
Pfam	UHGV-1420162_16	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1420162_16	PF14386	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1420162_17	557436.Lreu_0830	95.1	3.91e-23	N/A	N/A
PHROG	UHGV-1420162_18	phrog_9479	167.0	0	N/A	unknown function
structural_annotation	UHGV-1420162_18	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_19	phrog_309	144.9	1.79366e-43	terminase small subunit	head and packaging
UniRef90	UHGV-1420162_19	UniRef90_UPI001B3C9B19	221.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1420162_19	411470.RUMGNA_02210	148.0	6.86636e-44	transposase activity	N/A
Pfam	UHGV-1420162_19	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-1420162_19	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1420162_19	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1420162_20	K06909	79.4	4.9e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1420162_20	phrog_2	85.7	9.4e-25	terminase large subunit	head and packaging
UniRef90	UHGV-1420162_20	UniRef90_UPI00189AB5B3	853.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1420162_20	1304866.K413DRAFT_3034	610.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1420162_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1420162_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1420162_20	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_21	phrog_533	323.3	0	portal protein	head and packaging
UniRef90	UHGV-1420162_21	UniRef90_UPI00189C53D6	819.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-1420162_21	1304866.K413DRAFT_3035	475.0	0	N/A	N/A
structural_annotation	UHGV-1420162_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_22	phrog_581	306.8	0	minor head protein	head and packaging
UniRef90	UHGV-1420162_22	UniRef90_UPI001897AC3D	991.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1420162_22	658655.HMPREF0988_02563	347.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1420162_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1420162_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1420162_22	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_24	phrog_194	100.8	1.6e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-1420162_24	UniRef90_UPI0018995066	345.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1420162_24	742765.HMPREF9457_02126	166.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1420162_24	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1420162_24	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_25	phrog_422	234.9	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1420162_25	693746.OBV_18090	385.0	0	N/A	N/A
structural_annotation	UHGV-1420162_25	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_26	phrog_541	77.3	1.7e-22	head-tail adaptor	connector
eggNOG-mapper	UHGV-1420162_26	1449050.JNLE01000003_gene3888	82.4	1.16e-18	N/A	N/A
PHROG	UHGV-1420162_27	phrog_3366	64.6	1.1e-18	N/A	unknown function
Pfam	UHGV-1420162_27	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1420162_27	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_28	phrog_556	118.9	1.2e-35	minor head protein	head and packaging
UniRef90	UHGV-1420162_28	UniRef90_UPI00189BC4F9	356.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1420162_28	1449050.JNLE01000003_gene3886	150.0	1.82169e-44	N/A	N/A
Pfam	UHGV-1420162_28	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1420162_28	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_29	phrog_3266	94.3	9.8e-28	tail completion	connector
eggNOG-mapper	UHGV-1420162_29	1449050.JNLE01000003_gene3885	140.0	5.30994e-41	N/A	N/A
structural_annotation	UHGV-1420162_29	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_30	phrog_3099	143.5	9.5008e-43	N/A	unknown function
eggNOG-mapper	UHGV-1420162_30	1160721.RBI_II00532	210.0	0	N/A	N/A
structural_annotation	UHGV-1420162_30	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_31	phrog_11299	103.4	2e-30	N/A	unknown function
eggNOG-mapper	UHGV-1420162_31	1449050.JNLE01000003_gene3883	69.3	0.000000000000543	N/A	N/A
structural_annotation	UHGV-1420162_31	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_32	phrog_706	130.2	1.4e-38	N/A	unknown function
UniRef90	UHGV-1420162_32	UniRef90_UPI001B3C82AE	255.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1420162_32	1160721.RBI_II00530	194.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1420162_32	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1420162_32	PF06854	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1420162_34	1408311.JNJM01000003_gene2963	66.2	0.00000000125	N/A	N/A
structural_annotation	UHGV-1420162_34	PF07718,PF02883,NF007398,COG3121	N/A	N/A	N/A	N/A
KOfam	UHGV-1420162_35	K20282	40.0	0.0000000000038	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-1420162_35	phrog_1535	494.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1420162_35	UniRef90_A0A2N0ULX3	1147.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1420162_35	33035.JPJF01000093_gene2243	364.0	0	phage tail tape measure protein	N/A
COG	UHGV-1420162_35	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1420162_35	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_36	phrog_1194	62.4	6.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-1420162_36	397290.C810_05238	95.1	3.61e-23	N/A	N/A
Pfam	UHGV-1420162_36	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1420162_36	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_37	phrog_18190	73.7	6e-31	N/A	unknown function
UniRef90	UHGV-1420162_37	UniRef90_UPI001C01E293	76.3	0.0000000000371	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1420162_37	483218.BACPEC_01143	79.0	0.000000000000758	N/A	N/A
structural_annotation	UHGV-1420162_37	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
UniRef90	UHGV-1420162_38	UniRef90_A0A1C6HHE5	113.0	1.07e-25	BppU_N domain-containing protein	N/A
structural_annotation	UHGV-1420162_38	PF08931	N/A	N/A	N/A	N/A
KOfam	UHGV-1420162_40	K01447	118.2	8.9e-35	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1420162_40	phrog_833	186.3	0	endolysin	lysis
UniRef90	UHGV-1420162_40	UniRef90_R6MSP5	634.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1420162_40	428125.CLOLEP_01782	185.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1420162_40	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1420162_40	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1420162_40	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_41	phrog_199	75.1	8.2e-22	holin	lysis
UniRef90	UHGV-1420162_41	UniRef90_UPI00164BD6C2	266.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-1420162_41	1160721.RBI_I01565	150.0	1.26117e-44	Bacteriophage holin family	N/A
Pfam	UHGV-1420162_41	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1420162_41	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1420162_41	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1420162_41	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1420162_42	K14059	222.3	0	int; integrase	N/A
PHROG	UHGV-1420162_42	phrog_1	192.9	0	integrase	integration and excision
UniRef90	UHGV-1420162_42	UniRef90_A0A2N0ULT2	462.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1420162_42	428125.CLOLEP_02743	308.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1420162_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1420162_42	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1420162_42	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_43	phrog_16442	138.2	5.60001e-41	N/A	unknown function
UniRef90	UHGV-1420162_43	UniRef90_A0A373KW38	254.0	0	Nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-1420162_43	397291.C804_06293	195.0	0	Predicted nucleotide-binding protein containing TIR-like domain	N/A
PADLOC	UHGV-1420162_43	Effector_00069	49.8	0.000000000000065	TIR	CBASS
Pfam	UHGV-1420162_43	PF10137	N/A	N/A	CAP12/Pycsar effector protein, TIR domain	CAP12-PCTIR_TIR
COG	UHGV-1420162_43	COG4271	N/A	N/A	Predicted nucleotide-binding protein containing TIR -like domain	N/A
structural_annotation	UHGV-1420162_43	PF10137,COG4271	N/A	N/A	N/A	N/A
KOfam	UHGV-1420162_44	K18830	58.5	1.7e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1420162_44	phrog_8	44.1	0.0000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-1420162_44	UniRef90_A0A1G5CKS8	197.0	0	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-1420162_44	1151292.QEW_0314	99.8	7.48e-25	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1420162_44	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1420162_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1420162_44	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1420162_48	UniRef90_UPI0005510EBF	60.5	0.000000000128	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1420162_48	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1420162_53	phrog_674	155.9	0	N/A	unknown function
UniRef90	UHGV-1420162_53	UniRef90_A0A374N9T8	372.0	0	N/A	N/A
eggNOG-mapper	UHGV-1420162_53	1408437.JNJN01000039_gene373	181.0	0	N/A	N/A
Pfam	UHGV-1420162_53	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1420162_53	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1420162_54	K07455	103.9	2.5e-30	recT; recombination protein RecT	N/A
PHROG	UHGV-1420162_54	phrog_148	105.6	5.1e-31	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1420162_54	UniRef90_A0A374N9W0	289.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1420162_54	428127.EUBDOL_01509	169.0	0	RecT family	N/A
Pfam	UHGV-1420162_54	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1420162_54	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1420162_54	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1420162	Yes	35,963	39	98	1
UHGV-1510561	No	21,390	40	58	1
UHGV-0382511	No	12,623	40	32	1