vOTU vOTU-085356

vOTU: vOTU-085356

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-085356
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00030 → vGENUS-14131 → vSUBGEN-23440 → vOTU-085356
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1351441
Biosample ID	N/A
Genome length (bp)	31,157 bps
CheckV completeness	91.57% (High-quality)
CDS count	53
CDS density	93.15%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	193	Host agreement	77.72
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	32	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 91.57)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1351441_1	phrog_6380	92.5	3.9e-27	DNA methyltransferase	other
UniRef90	UHGV-1351441_1	UniRef90_R5BDF6	82.0	4.05e-16	N-6 DNA Methylase	N/A
eggNOG-mapper	UHGV-1351441_1	592010.GCWU000182_001448	65.1	0.000000000191	HsdM N-terminal domain	N/A
COG	UHGV-1351441_1	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-1351441_1	PF02475,MF_02217,NF000058,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_3	phrog_7566	100.2	9.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-1351441_3	1280698.AUJS01000007_gene1020	239.0	0	N/A	N/A
PHROG	UHGV-1351441_4	phrog_15077	123.6	5.8e-37	N/A	unknown function
UniRef90	UHGV-1351441_4	UniRef90_A0A174WLY0	106.0	3.53e-21	N/A	N/A
eggNOG-mapper	UHGV-1351441_4	1280698.AUJS01000007_gene1019	218.0	0	N/A	N/A
structural_annotation	UHGV-1351441_4	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_5	phrog_8470	263.2	0	N/A	unknown function
UniRef90	UHGV-1351441_5	UniRef90_UPI001D0719D3	774.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1351441_5	457412.RSAG_01172	192.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1351441_5	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1351441_5	PF14284	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351441_6	UniRef90_UPI0003F6328F	205.0	0	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-1351441_6	1235793.C809_01906	80.9	3.11e-17	N/A	N/A
Pfam	UHGV-1351441_6	PF14058	N/A	N/A	PcfK-like protein	PcfK
KOfam	UHGV-1351441_7	K03469	51.5	0.000000000000017	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1351441_7	phrog_531	57.2	3.1e-16	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1351441_7	UniRef90_A0A6N9JSQ7	264.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1351441_7	1280698.AUJS01000007_gene1015	275.0	0	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-1351441_7	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1351441_7	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1351441_7	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_9	phrog_3584	153.6	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1351441_9	1280698.AUJS01000007_gene1013	514.0	0	N/A	N/A
structural_annotation	UHGV-1351441_9	PF01446	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_14	phrog_32192	103.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1351441_14	1280698.AUJS01000007_gene1007	162.0	0	N/A	N/A
KOfam	UHGV-1351441_17	K18830	72.6	5.8e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1351441_17	phrog_8	59.6	6.7e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1351441_17	UniRef90_A0A173RBE6	254.0	0	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-1351441_17	1280698.AUJS01000007_gene1002	221.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1351441_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1351441_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1351441_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_20	phrog_7115	142.1	1.60028e-42	N/A	unknown function
UniRef90	UHGV-1351441_20	UniRef90_A0A396KU40	307.0	0	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-1351441_20	1280698.AUJS01000007_gene1000	311.0	0	Bacterial PH domain	N/A
Pfam	UHGV-1351441_20	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
KOfam	UHGV-1351441_21	K06400	265.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1351441_21	phrog_95	296.7	0	integrase	integration and excision
UniRef90	UHGV-1351441_21	UniRef90_UPI00156F85ED	901.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1351441_21	411461.DORFOR_00037	687.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1351441_21	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1351441_21	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1351441_21	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1351441_21	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1351441_22	K01447	96.6	3.6e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1351441_22	phrog_1493	194.0	0	endolysin	lysis
UniRef90	UHGV-1351441_22	UniRef90_UPI001D016E56	483.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1351441_22	1280698.AUJS01000007_gene1059	476.0	0	Ami_2	N/A
Pfam	UHGV-1351441_22	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1351441_22	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1351441_22	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-1351441_22	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_23	phrog_1048	170.7	0	N/A	unknown function
UniRef90	UHGV-1351441_23	UniRef90_UPI001E4F489A	298.0	0	N/A	N/A
eggNOG-mapper	UHGV-1351441_23	457412.RSAG_01107	259.0	0	N/A	N/A
Pfam	UHGV-1351441_23	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1351441_23	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1351441_23	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_24	phrog_443	62.0	1.5e-17	holin	lysis
UniRef90	UHGV-1351441_24	UniRef90_UPI001C0212A6	96.3	1.23e-24	holin	N/A
eggNOG-mapper	UHGV-1351441_24	1235802.C823_05612	84.7	8.54e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1351441_24	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1351441_24	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_25	phrog_4105	57.6	2.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1351441_25	537013.CLOSTMETH_01753	56.6	0.00000000416	N/A	N/A
PHROG	UHGV-1351441_26	phrog_28526	116.8	5.6e-35	N/A	unknown function
UniRef90	UHGV-1351441_26	UniRef90_UPI00156FE2AD	85.9	3.09e-21	N/A	N/A
eggNOG-mapper	UHGV-1351441_26	411462.DORLON_00769	90.1	1.11e-23	N/A	N/A
structural_annotation	UHGV-1351441_30	PF10807,MF_01372,NF007541	N/A	N/A	N/A	N/A
UniRef90	UHGV-1351441_31	UniRef90_UPI00156D7781	300.0	0	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-1351441_31	411462.DORLON_00771	363.0	0	N/A	N/A
structural_annotation	UHGV-1351441_31	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_32	phrog_19695	122.6	3.3e-36	N/A	unknown function
eggNOG-mapper	UHGV-1351441_32	411462.DORLON_00772	184.0	0	N/A	N/A
structural_annotation	UHGV-1351441_32	PF19714	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_33	phrog_1382	77.1	9.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-1351441_33	411461.DORFOR_00727	79.0	3.24e-19	N/A	N/A
PHROG	UHGV-1351441_34	phrog_12931	97.2	1.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-1351441_34	411461.DORFOR_00728	197.0	0	N/A	N/A
eggNOG-mapper	UHGV-1351441_35	411461.DORFOR_01178	84.3	4.14e-18	N/A	N/A
PHROG	UHGV-1351441_36	phrog_25635	272.6	0	N/A	unknown function
UniRef90	UHGV-1351441_36	UniRef90_A0A6L8RVX5	174.0	0	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-1351441_36	1280698.AUJS01000007_gene1050	274.0	0	N/A	N/A
structural_annotation	UHGV-1351441_36	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_37	phrog_538	200.3	0	minor tail protein	tail
UniRef90	UHGV-1351441_37	UniRef90_UPI001F3E20C1	504.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1351441_37	1280698.AUJS01000007_gene1049	657.0	0	N/A	N/A
Pfam	UHGV-1351441_37	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1351441_37	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_38	phrog_33	56.8	5.1e-16	distal tail protein Dit	tail
UniRef90	UHGV-1351441_38	UniRef90_UPI001F242491	440.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1351441_38	1280698.AUJS01000007_gene1048	593.0	0	N/A	N/A
structural_annotation	UHGV-1351441_38	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_39	phrog_6900	259.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1351441_39	UniRef90_A0A174L0T5	565.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1351441_39	1280698.AUJS01000007_gene1047	808.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1351441_39	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351441_39	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_40	phrog_1633	161.7	0	N/A	unknown function
UniRef90	UHGV-1351441_40	UniRef90_UPI00157064A0	145.0	1.56945e-42	N/A	N/A
eggNOG-mapper	UHGV-1351441_40	1280698.AUJS01000007_gene1046	244.0	0	N/A	N/A
Pfam	UHGV-1351441_40	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1351441_40	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_41	phrog_1526	106.6	1.1e-31	N/A	unknown function
UniRef90	UHGV-1351441_41	UniRef90_A0A1Q8EF45	72.8	0.00000000000000846	N/A	N/A
eggNOG-mapper	UHGV-1351441_41	665950.HMPREF1025_02524	82.4	2.06e-19	N/A	N/A
PHROG	UHGV-1351441_42	phrog_117	173.8	0	major tail protein	tail
UniRef90	UHGV-1351441_42	UniRef90_UPI001F18A06D	279.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1351441_42	1280698.AUJS01000007_gene1044	360.0	0	domain, Protein	N/A
COG	UHGV-1351441_42	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351441_42	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_43	phrog_123	50.0	0.000000000000053	tail terminator	connector
UniRef90	UHGV-1351441_43	UniRef90_D2BQF4	120.0	5.3e-33	N/A	N/A
eggNOG-mapper	UHGV-1351441_43	1280698.AUJS01000007_gene1043	192.0	0	N/A	N/A
structural_annotation	UHGV-1351441_43	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_44	phrog_387	49.1	0.000000000000044	neck protein	connector
eggNOG-mapper	UHGV-1351441_44	908337.HMPREF9257_0534	52.4	0.0000000465	N/A	N/A
PHROG	UHGV-1351441_45	phrog_501	91.8	5.4e-27	head closure Hc1	connector
UniRef90	UHGV-1351441_45	UniRef90_Q7Y4I1	134.0	1.39e-38	Gp43	N/A
eggNOG-mapper	UHGV-1351441_45	1280698.AUJS01000007_gene1041	227.0	0	N/A	N/A
structural_annotation	UHGV-1351441_45	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_46	phrog_137	110.5	7.4e-33	head-tail adaptor Ad1	connector
UniRef90	UHGV-1351441_46	UniRef90_A0A1C5Y9F2	189.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1351441_46	1280698.AUJS01000007_gene1040	259.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1351441_46	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1351441_46	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_47	phrog_36603	77.6	9.2e-23	N/A	unknown function
PHROG	UHGV-1351441_48	phrog_32396	146.7	3.36312e-44	N/A	unknown function
UniRef90	UHGV-1351441_48	UniRef90_UPI001961D35B	479.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1351441_48	1280698.AUJS01000007_gene1038	571.0	0	Phage capsid family	N/A
structural_annotation	UHGV-1351441_48	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_49	phrog_233	121.4	1.8e-37	head scaffolding protein	head and packaging
UniRef90	UHGV-1351441_49	UniRef90_A0A0X8USY7	114.0	1.42e-29	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-1351441_49	1280698.AUJS01000007_gene1037	275.0	0	N/A	N/A
Pfam	UHGV-1351441_49	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1351441_49	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_50	phrog_17688	344.2	0	N/A	unknown function
UniRef90	UHGV-1351441_50	UniRef90_R6SFU1	913.0	0	Putative phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1351441_50	1280698.AUJS01000007_gene1036	911.0	0	phage terminase, large subunit	N/A
COG	UHGV-1351441_50	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1351441_50	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_51	phrog_1865	54.3	0.0000000000000018	N/A	unknown function
structural_annotation	UHGV-1351441_51	PF07073,MF_00436,NF008636,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_52	phrog_2494	392.6	0	minor head protein	head and packaging
UniRef90	UHGV-1351441_52	UniRef90_UPI00156EC2C0	753.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-1351441_52	1280698.AUJS01000007_gene1034	735.0	0	cell adhesion	N/A
Pfam	UHGV-1351441_52	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-1351441_52	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1351441_52	PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-1351441_53	phrog_104	283.3	0	portal protein	head and packaging
UniRef90	UHGV-1351441_53	UniRef90_UPI001A9C29A4	581.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1351441_53	1280698.AUJS01000007_gene1033	820.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1351441_53	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1351441	Yes	31,157	41	92	1
UHGV-0207484	No	16,227	41	48	1