vOTU vOTU-085357

vOTU: vOTU-085357

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-085357
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-00131 → vSUBGEN-40019 → vOTU-085357
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0027141
Biosample ID	N/A
Genome length (bp)	38,318 bps
CheckV completeness	94.03% (High-quality)
CDS count	64
CDS density	95.68%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	434	Host agreement	98.39
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 94.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0027141_1	phrog_13845	54.1	0.0000000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0027141_1	1399942.U3PDR2_9CAUD	63.5	0.0000000000252	N/A	N/A
Pfam	UHGV-0027141_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0027141_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_2	phrog_9	239.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0027141_2	UniRef90_A0A2A7ALT4	1059.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0027141_2	610130.Closa_0741	636.0	0	Phage Terminase	N/A
Pfam	UHGV-0027141_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0027141_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0027141_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_3	phrog_12	128.1	6.5e-38	portal protein	head and packaging
UniRef90	UHGV-0027141_3	UniRef90_A0A2A7B6S8	549.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0027141_3	349161.Dred_2606	264.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0027141_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0027141_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0027141_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0027141_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0027141_4	K01358	74.2	2.4e-21	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0027141_4	phrog_94	129.5	3.8e-38	head maturation protease	head and packaging
UniRef90	UHGV-0027141_4	UniRef90_UPI00111E41DA	137.0	2.58e-36	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0027141_4	1232452.BAIB02000007_gene1626	130.0	1.36e-34	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0027141_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0027141_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0027141_4	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_5	phrog_10	129.7	1.8e-38	major head protein	head and packaging
UniRef90	UHGV-0027141_5	UniRef90_A0A2A7B712	722.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0027141_5	1235792.C808_00086	441.0	0	Phage capsid family	N/A
Pfam	UHGV-0027141_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0027141_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0027141_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0027141_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0027141_5	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_6	phrog_749	53.6	0.0000000000000038	N/A	unknown function
UniRef90	UHGV-0027141_6	UniRef90_UPI00099504CB	52.8	0.00000103	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0027141_6	1211817.CCAT010000053_gene2133	68.9	0.0000000000000869	N/A	N/A
PHROG	UHGV-0027141_7	phrog_19734	92.4	4.3e-27	N/A	unknown function
UniRef90	UHGV-0027141_7	UniRef90_A0A0D8I708	79.0	2.66e-16	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0027141_7	349161.Dred_2602	73.2	0.00000000000000773	N/A	N/A
structural_annotation	UHGV-0027141_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027141_8	999413.HMPREF1094_02005	73.2	0.0000000000000022	N/A	N/A
structural_annotation	UHGV-0027141_8	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_9	phrog_5	49.0	0.00000000000011	tail completion or Neck1 protein	connector
UniRef90	UHGV-0027141_9	UniRef90_A0A1C6FG30	132.0	3.65e-36	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0027141_9	908340.HMPREF9406_2573	109.0	5.68e-28	N/A	N/A
structural_annotation	UHGV-0027141_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_10	phrog_88	95.0	7.9e-28	major tail protein	tail
UniRef90	UHGV-0027141_10	UniRef90_G9YSC5	108.0	6.33e-26	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0027141_10	349161.Dred_2600	64.7	0.000000000733	N/A	N/A
NCBIFam	UHGV-0027141_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0027141_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_13	phrog_9959	86.3	1.9e-25	tail length tape measure protein	tail
UniRef90	UHGV-0027141_13	UniRef90_A0A2A7ALS3	816.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0027141_13	1492737.FEM08_12070	154.0	1.87e-36	tape measure	N/A
Pfam	UHGV-0027141_13	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0027141_13	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0027141_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0027141_13	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_14	phrog_33	74.7	2.1e-21	distal tail protein Dit	tail
UniRef90	UHGV-0027141_14	UniRef90_A0A173Z1X4	139.0	3.05e-37	Phage-related protein	N/A
eggNOG-mapper	UHGV-0027141_14	908340.HMPREF9406_2569	92.8	4.78e-20	phage tail	N/A
NCBIFam	UHGV-0027141_14	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0027141_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0027141_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_15	phrog_1067	171.5	0	minor head protein	head and packaging
UniRef90	UHGV-0027141_15	UniRef90_A0A2A7AM44	703.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0027141_15	1123263.AUKY01000068_gene489	192.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0027141_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0027141_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0027141_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0027141_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027141_17	UniRef90_UPI0013CD3B72	117.0	1.15e-23	BppU family phage baseplate upper protein	N/A
structural_annotation	UHGV-0027141_17	PF10651,PF01095	N/A	N/A	N/A	N/A
KOfam	UHGV-0027141_18	K07273	162.2	0	acm; lysozyme	N/A
PHROG	UHGV-0027141_18	phrog_291	127.7	1.1e-37	endolysin	lysis
UniRef90	UHGV-0027141_18	UniRef90_UPI001D0EE7D8	297.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0027141_18	748224.HMPREF9436_00154	276.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0027141_18	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0027141_18	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0027141_18	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_19	phrog_1863	75.4	4.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0027141_19	718252.FP2_04900	142.0	2.49431e-43	N/A	N/A
PHROG	UHGV-0027141_20	phrog_15303	85.6	4.2e-25	N/A	unknown function
PHROG	UHGV-0027141_21	phrog_1384	113.8	1.5e-33	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0027141_21	665956.HMPREF1032_03086	204.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0027141_21	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027141_23	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0027141_24	K22300	62.1	6.9e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0027141_24	phrog_8	64.4	2.9e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0027141_24	UniRef90_R6TWI8	59.3	0.0000000639	Transcriptional regulator XRE family	N/A
eggNOG-mapper	UHGV-0027141_24	1235790.C805_00648	58.9	0.0000000248	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0027141_24	retron_type_VI_hth_cluster2_1	42.7	0.0000000000011	N/A	Retron
Pfam	UHGV-0027141_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0027141_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0027141_24	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_28	phrog_16490	106.6	3.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0027141_28	1408437.JNJN01000043_gene803	167.0	0	N/A	N/A
eggNOG-mapper	UHGV-0027141_29	1408437.JNJN01000043_gene802	124.0	2.75e-35	N/A	N/A
eggNOG-mapper	UHGV-0027141_30	1408437.JNJN01000043_gene801	96.7	4.49e-22	N/A	N/A
KOfam	UHGV-0027141_31	K14059	180.7	0	int; integrase	N/A
PHROG	UHGV-0027141_31	phrog_1	160.7	0	integrase	integration and excision
UniRef90	UHGV-0027141_31	UniRef90_A0A367GI93	219.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0027141_31	1507.HMPREF0262_00307	160.0	9.711e-43	Phage integrase family	N/A
Pfam	UHGV-0027141_31	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0027141_31	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0027141_31	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_32	phrog_1373	41.3	0.00000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0027141_32	UniRef90_A0A2A7AM70	188.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0027141_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0027141_32	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0027141_32	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0027141_35	K02342	40.0	0.000000000044	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0027141_35	phrog_192	56.7	3.6e-16	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0027141_35	1121333.JMLH01000063_gene1384	81.6	0.0000000000000124	SWIM zinc finger	N/A
COG	UHGV-0027141_35	COG0847	N/A	N/A	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	N/A
structural_annotation	UHGV-0027141_35	PF00929,PF00533,MF_00157,NF004844,COG0847	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027141_39	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027141_40	UniRef90_A0A2A7AM72	165.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0027141_40	1378168.N510_01712	64.7	0.0000000000569	N/A	N/A
structural_annotation	UHGV-0027141_40	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0027141_41	UniRef90_UPI000BEF0F65	70.9	0.00000000000000636	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0027141_41	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027141_48	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_51	phrog_14970	47.4	0.00000000000037	N/A	unknown function
COG	UHGV-0027141_51	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0027141_51	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_52	phrog_72	47.8	0.00000000000024	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0027141_52	411471.SUBVAR_05829	137.0	1.23e-38	N/A	N/A
structural_annotation	UHGV-0027141_52	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_55	phrog_7566	84.1	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0027141_55	411471.SUBVAR_05830	100.0	1.76e-26	N/A	N/A
KOfam	UHGV-0027141_56	K03111	142.9	3.20057e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0027141_56	phrog_44	145.0	3.79752e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027141_56	UniRef90_D4K451	210.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0027141_56	718252.FP2_06770	210.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0027141_56	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0027141_56	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0027141_56	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0027141_56	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0027141_56	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0027141_57	748224.HMPREF9436_00735	156.0	2.9147e-43	N/A	N/A
Pfam	UHGV-0027141_57	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0027141_57	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0027141_57	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0027141_59	K03496	206.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0027141_59	phrog_164	154.1	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027141_59	UniRef90_A0A2A7B6H3	357.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0027141_59	411471.SUBVAR_05839	229.0	0	AAA domain	N/A
Pfam	UHGV-0027141_59	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0027141_59	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0027141_59	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0027141_60	K03497	89.2	8.4e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0027141_60	phrog_4715	119.3	3.2e-35	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0027141_60	UniRef90_A0A2A7AMC5	296.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0027141_60	411471.SUBVAR_05842	187.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0027141_60	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0027141_60	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0027141_60	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0027141_61	PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-0027141_64	phrog_3136	77.3	1.7e-22	N/A	unknown function
UniRef90	UHGV-0027141_64	UniRef90_UPI001C02A61B	95.1	4.24e-22	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0027141_64	394503.Ccel_3165	50.4	0.000002	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0027141_64	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0027141_64	PF12961,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0027141	Yes	38,318	53	94	1