vOTU vOTU-085427

vOTU: vOTU-085427

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-085427
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00111 → vSUBGEN-23679 → vOTU-085427
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0136208
Biosample ID	SAMN02675044
Genome length (bp)	33,465 bps
CheckV completeness	95.12% (High-quality)
CDS count	47
CDS density	90.82%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	2146	Host agreement	86.16
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	107	Host agreement	98.13

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0136208_1	phrog_918	114.6	3.4e-34	N/A	unknown function
UniRef90	UHGV-0136208_1	UniRef90_UPI00164AB9AF	123.0	6.26e-35	N/A	N/A
eggNOG-mapper	UHGV-0136208_1	1504823.CCMM01000008_gene1021	115.0	9.02e-33	N/A	N/A
Pfam	UHGV-0136208_1	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0136208_1	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_2	phrog_18591	131.1	5.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0136208_2	1230343.CANP01000040_gene3044	187.0	0	N/A	N/A
PHROG	UHGV-0136208_3	phrog_443	63.4	6.2e-18	holin	lysis
UniRef90	UHGV-0136208_3	UniRef90_R6R2Q3	90.5	1.44e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0136208_3	1298920.KI911353_gene2669	82.4	3.96e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0136208_3	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0136208_3	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_4	phrog_1863	71.0	1.4e-21	N/A	unknown function
UniRef90	UHGV-0136208_4	UniRef90_UPI001F223E8B	91.3	1.9e-22	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0136208_4	1203606.HMPREF1526_02027	82.4	9.85e-20	N/A	N/A
UniRef90	UHGV-0136208_6	UniRef90_A0A374N9Y2	209.0	0	N/A	N/A
structural_annotation	UHGV-0136208_6	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_7	phrog_1067	93.8	4.7e-28	minor head protein	head and packaging
UniRef90	UHGV-0136208_7	UniRef90_A0A1G5CPD2	152.0	1.43e-38	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0136208_7	1462527.CCDM010000003_gene3730	57.8	0.00000442	gp58-like protein	N/A
NCBIFam	UHGV-0136208_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0136208_7	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136208_7	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_8	phrog_33	81.4	2e-23	distal tail protein Dit	tail
UniRef90	UHGV-0136208_8	UniRef90_A0A1G5CPA2	134.0	8.54e-35	Phage-related protein	N/A
eggNOG-mapper	UHGV-0136208_8	1444306.JFZC01000034_gene2623	90.9	4.58e-19	tail component	N/A
COG	UHGV-0136208_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0136208_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0136208_9	K20283	42.8	0.00000000000048	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0136208_9	phrog_5218	279.5	0	N/A	unknown function
UniRef90	UHGV-0136208_9	UniRef90_UPI000E474EFE	1504.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0136208_9	999413.HMPREF1094_02001	281.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0136208_9	PF09167	N/A	N/A	N/A	DUF1942
Pfam	UHGV-0136208_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0136208_9	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0136208_9	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136208_10	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_11	phrog_88	73.3	3.5e-21	major tail protein	tail
eggNOG-mapper	UHGV-0136208_11	1321782.HMPREF1986_01362	65.1	0.000000000263	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0136208_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0136208_11	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0136208_12	UniRef90_UPI000E5564A4	273.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0136208_12	1235792.C808_00089	50.1	0.00000847	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0136208_12	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0136208_12	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136208_13	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_14	phrog_19734	74.3	1.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0136208_14	86416.Clopa_0343	60.5	0.000000000316	N/A	N/A
NCBIFam	UHGV-0136208_14	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0136208_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_15	phrog_749	55.7	8.2e-16	N/A	unknown function
UniRef90	UHGV-0136208_15	UniRef90_A0A1G5CMX8	104.0	4.99e-27	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0136208_15	1211817.CCAT010000053_gene2133	59.7	0.000000000292	N/A	N/A
PHROG	UHGV-0136208_16	phrog_10	123.8	1.7e-36	major head protein	head and packaging
UniRef90	UHGV-0136208_16	UniRef90_A0A412ULW9	724.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0136208_16	1211817.CCAT010000053_gene2132	324.0	0	Phage capsid family	N/A
Pfam	UHGV-0136208_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0136208_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0136208_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0136208_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0136208_17	K01358	142.6	3.80032e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0136208_17	phrog_94	213.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0136208_17	UniRef90_A0A412ULU1	410.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0136208_17	86416.Clopa_0340	171.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0136208_17	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0136208_17	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0136208_17	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_18	phrog_12	103.8	1.4e-30	portal protein	head and packaging
UniRef90	UHGV-0136208_18	UniRef90_A0A412ULV9	740.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0136208_18	1415774.U728_1254	263.0	0	Phage portal protein	N/A
Pfam	UHGV-0136208_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0136208_18	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0136208_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0136208_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_19	phrog_9	303.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0136208_19	UniRef90_A0A412UM03	1022.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0136208_19	86416.Clopa_0337	632.0	0	Phage Terminase	N/A
Pfam	UHGV-0136208_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0136208_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0136208_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0136208_19	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_20	phrog_5110	83.0	2.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0136208_20	UniRef90_A0A1M5U1D5	113.0	1.2e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0136208_20	1211817.CCAT010000053_gene2128	100.0	3.14e-26	N/A	N/A
Pfam	UHGV-0136208_20	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0136208_20	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_21	phrog_119	69.1	6.7e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0136208_21	UniRef90_A0A412ULY9	221.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0136208_21	1158607.UAU_01026	99.8	8.3e-26	HNH endonuclease	N/A
Pfam	UHGV-0136208_21	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0136208_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0136208_22	431943.CKL_4074	52.4	0.00000119	N/A	N/A
structural_annotation	UHGV-0136208_22	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_23	phrog_3584	146.9	1.4013e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0136208_23	1235800.C819_00515	72.4	0.00000000000271	N/A	N/A
structural_annotation	UHGV-0136208_23	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_26	phrog_824	144.7	2.90069e-43	N/A	unknown function
UniRef90	UHGV-0136208_26	UniRef90_A0A3D3D6C6	250.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0136208_26	397288.C806_00096	159.0	0	VRR_NUC	N/A
Pfam	UHGV-0136208_26	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0136208_26	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_27	phrog_24518	83.0	3.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0136208_27	1519439.JPJG01000077_gene922	107.0	2.08e-26	N/A	N/A
KOfam	UHGV-0136208_28	K04763	205.3	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0136208_28	phrog_1	162.4	0	integrase	integration and excision
UniRef90	UHGV-0136208_28	UniRef90_UPI001B3C6404	382.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0136208_28	1235793.C809_01951	223.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0136208_28	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0136208_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0136208_28	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0136208_28	PF00589,PF13495,MF_01808,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_29	phrog_323	79.4	1.7e-26	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0136208_29	UniRef90_UPI001C01CFF8	303.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0136208_29	394503.Ccel_3305	340.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-0136208_29	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0136208_29	PF11112,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-0136208_30	K03427	45.5	0.00000000000088	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0136208_30	phrog_5696	240.2	0	N/A	unknown function
UniRef90	UHGV-0136208_30	UniRef90_UPI001B3C9C54	285.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0136208_30	397291.C804_06560	162.0	0	N-6 DNA Methylase	N/A
Pfam	UHGV-0136208_30	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0136208_30	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0136208_30	COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0136208_31	K03497	154.3	1.4013e-45	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0136208_31	phrog_6218	239.4	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0136208_31	UniRef90_UPI000E47CAB6	782.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0136208_31	394503.Ccel_3306	238.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0136208_31	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0136208_31	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0136208_31	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0136208_31	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_33	phrog_6058	41.4	0.000000000016	N/A	unknown function
structural_annotation	UHGV-0136208_33	NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0136208_34	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
UniRef90	UHGV-0136208_39	UniRef90_UPI001897B0FF	70.9	0.0000000000000091	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0136208_39	1121289.JHVL01000079_gene1187	59.7	0.0000000000377	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0136208_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0136208_39	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0136208_40	K22300	47.7	0.00000000000033	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0136208_40	phrog_8	41.1	0.000000000037	transcriptional regulator	transcription regulation
UniRef90	UHGV-0136208_40	UniRef90_UPI0015F3DE1D	107.0	1.07e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0136208_40	272562.CA_C1559	67.4	0.00000000000249	sequence-specific DNA binding	N/A
Pfam	UHGV-0136208_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0136208_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0136208_40	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0136208_41	phrog_1914	144.9	5.00264e-43	N/A	unknown function
UniRef90	UHGV-0136208_41	UniRef90_UPI000E543E50	331.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0136208_41	1160721.RBI_I01604	169.0	0	N/A	N/A
Pfam	UHGV-0136208_41	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0136208_41	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0136208_41	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0136208_42	UniRef90_UPI000E52DA24	732.0	0	zinc ribbon domain-containing protein	N/A
Pfam	UHGV-0136208_42	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-0136208_42	PF18933,PF02883,MF_02248,NF008627,COG5435,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-0136208_43	K14059	108.3	1.2e-31	int; integrase	N/A
PHROG	UHGV-0136208_43	phrog_1	128.1	9.7e-38	integrase	integration and excision
UniRef90	UHGV-0136208_43	UniRef90_A0A1G5CL52	747.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0136208_43	693746.OBV_41260	187.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0136208_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0136208_43	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0136208_43	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0136208_47	UniRef90_A0A412ULX9	87.8	5.66e-22	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0136208_47	679200.HMPREF9333_02253	47.4	0.000000922	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0136208_47	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0136208	Yes	33,465	39	95	1
UHGV-1544290	No	33,623	39	96	1