vOTU vOTU-085521

vOTU: vOTU-085521

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-085521
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-02675 → vSUBGEN-39047 → vOTU-085521
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0011003
Biosample ID	SAMEA4765906
Genome length (bp)	41,708 bps
CheckV completeness	99.00% (High-quality)
CDS count	71
CDS density	90.96%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	283	Host agreement	96.47
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0011003_2	phrog_3558	197.1	0	tail protein	tail
UniRef90	UHGV-0011003_2	UniRef90_A0A3E2U3C8	163.0	1.21e-39	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0011003_2	1235799.C818_04233	94.7	7.94e-18	Prophage endopeptidase tail	N/A
Pfam	UHGV-0011003_2	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0011003_2	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0011003_2	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011003_3	UniRef90_R6QN45	86.7	7.35e-17	Putative phage tail component domain protein	N/A
eggNOG-mapper	UHGV-0011003_3	411490.ANACAC_00709	78.6	0.0000000000000123	phage tail	N/A
COG	UHGV-0011003_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0011003_3	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_4	phrog_28775	110.4	1.4e-32	tail length tape measure protein	tail
UniRef90	UHGV-0011003_4	UniRef90_A0A844DDD5	580.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0011003_4	1492737.FEM08_12070	135.0	3.47e-30	tape measure	N/A
Pfam	UHGV-0011003_4	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0011003_4	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0011003_4	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0011003_4	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_7	phrog_885	66.3	3.7e-19	major tail protein	tail
UniRef90	UHGV-0011003_7	UniRef90_A0A843J9F0	125.0	3.8e-32	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0011003_7	457396.CSBG_01054	60.8	0.0000000148	Chitobiase/beta-hexosaminidase C-terminal domain	N/A
COG	UHGV-0011003_7	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-0011003_7	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011003_8	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_9	phrog_17977	45.0	0.0000000000014	N/A	unknown function
UniRef90	UHGV-0011003_9	UniRef90_A0A844DHJ8	238.0	0	Phage head closure protein	N/A
structural_annotation	UHGV-0011003_9	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_11	phrog_544	141.1	7.40026e-42	major head protein	head and packaging
UniRef90	UHGV-0011003_11	UniRef90_R0BKA1	434.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0011003_11	476272.RUMHYD_01776	323.0	0	N/A	N/A
structural_annotation	UHGV-0011003_11	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011003_12	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_14	phrog_5	49.6	0.000000000000095	tail completion or Neck1 protein	connector
UniRef90	UHGV-0011003_14	UniRef90_A0A844DDB3	287.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0011003_14	1123309.AQYB01000018_gene814	94.4	9.95e-23	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0011003_14	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0011003_14	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_16	phrog_8680	195.2	0	N/A	unknown function
UniRef90	UHGV-0011003_16	UniRef90_A0A844D688	441.0	0	N/A	N/A
eggNOG-mapper	UHGV-0011003_16	1423790.BN53_04265	178.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0011003_16	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0011003_16	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0011003_16	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_18	phrog_2468	81.5	5.2e-24	head morphogenesis	head and packaging
UniRef90	UHGV-0011003_18	UniRef90_A0A844DBI4	611.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0011003_18	1504822.CCNO01000013_gene286	128.0	4.43e-30	cell adhesion	N/A
Pfam	UHGV-0011003_18	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0011003_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011003_18	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_20	phrog_64	124.1	4.2e-37	portal protein	head and packaging
UniRef90	UHGV-0011003_20	UniRef90_A0A6N7TNT3	478.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0011003_20	673376.F2VHW1_9CAUD	166.0	1.37327e-43	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0011003_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0011003_20	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0011003_21	K06909	337.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0011003_21	phrog_3717	133.6	1.1e-39	terminase large subunit	head and packaging
UniRef90	UHGV-0011003_21	UniRef90_A0A1Y4ES07	504.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0011003_21	411471.SUBVAR_06507	464.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0011003_21	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
Pfam	UHGV-0011003_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0011003_21	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0011003_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0011003_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0011003_21	PF04466,PF16677,PF17289,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_22	phrog_36	53.2	0.0000000000000053	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0011003_22	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011003_24	PF14354	N/A	N/A	N/A	N/A
KOfam	UHGV-0011003_25	K01160	61.4	2.7e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0011003_25	phrog_34	61.6	1.5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011003_25	UniRef90_A0A844DBG8	245.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0011003_25	875454.BAEW01000002_gene491	135.0	1.27e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0011003_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0011003_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0011003_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_26	phrog_3136	109.9	9.4e-33	N/A	unknown function
UniRef90	UHGV-0011003_26	UniRef90_A0A6N7TMC2	157.0	2.8026e-45	ASCH domain-containing protein	N/A
COG	UHGV-0011003_26	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0011003_26	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_27	phrog_757	182.7	0	DNA methyltransferase	other
UniRef90	UHGV-0011003_27	UniRef90_A0A3E2U1Y9	347.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0011003_27	748224.HMPREF9436_03069	266.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0011003_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0011003_27	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_29	phrog_16304	67.4	2.5e-19	N/A	unknown function
UniRef90	UHGV-0011003_29	UniRef90_A0A844D5V0	248.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0011003_29	1226322.HMPREF1545_00016	58.5	0.000000201	HNH endonuclease	N/A
Pfam	UHGV-0011003_29	PF19808	N/A	N/A	N/A	DUF6291
NCBIFam	UHGV-0011003_29	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0011003_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0011003_29	PF19808,TIGR01446	N/A	N/A	N/A	N/A
KOfam	UHGV-0011003_30	K03111	140.4	1.79997e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0011003_30	phrog_44	140.7	6.09985e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011003_30	UniRef90_A0A844DI52	266.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0011003_30	718252.FP2_06770	206.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0011003_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0011003_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0011003_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0011003_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0011003_30	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_31	phrog_7838	111.4	9.9e-33	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011003_31	UniRef90_A0A8D9UGW3	178.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0011003_31	742767.HMPREF9456_02052	131.0	2.61e-35	N/A	N/A
structural_annotation	UHGV-0011003_31	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011003_33	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011003_35	PF07870,COG3461	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_38	phrog_15946	82.9	6.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0011003_38	1445613.JALM01000017_gene5891	52.0	0.00000457	N/A	N/A
PHROG	UHGV-0011003_39	phrog_4652	89.5	5.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0011003_39	397290.C810_01459	157.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-0011003_39	TIGR02582,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0011003_41	K16629	51.8	0.0000000000000046	COL21A; collagen type XXI alpha	N/A
PHROG	UHGV-0011003_41	phrog_4433	217.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0011003_41	187303.BN69_1605	100.0	1.24e-21	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0011003_41	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0011003_41	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0011003_41	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_42	phrog_373	149.9	1.54143e-44	anti-repressor	transcription regulation
UniRef90	UHGV-0011003_42	UniRef90_UPI001CBC74BC	312.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0011003_42	748224.HMPREF9436_01449	164.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0011003_42	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0011003_42	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0011003_42	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0011003_42	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0011003_47	K22300	49.2	0.00000000000011	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0011003_47	phrog_2967	50.5	0.000000000000038	transcriptional regulator	transcription regulation
UniRef90	UHGV-0011003_47	UniRef90_A0A844DFR0	189.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0011003_47	748224.HMPREF9436_01444	139.0	1.54e-40	N/A	N/A
Pfam	UHGV-0011003_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0011003_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0011003_47	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_49	phrog_4980	107.3	4.1e-32	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0011003_49	UniRef90_UPI000F643789	77.4	0.0000000000000185	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-0011003_49	428127.EUBDOL_01530	68.2	0.0000000000528	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0011003_49	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0011003_49	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0011003_49	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0011003_49	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-0011003_52	K15773	46.5	0.0000000000007	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0011003_52	phrog_2328	45.8	0.0000000000004	transcriptional repressor	transcription regulation
UniRef90	UHGV-0011003_52	UniRef90_UPI0018CC79B4	329.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0011003_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0011003_52	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0011003_52	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0011003_53	K14059	144.6	1.10002e-42	int; integrase	N/A
PHROG	UHGV-0011003_53	phrog_1	163.7	0	integrase	integration and excision
UniRef90	UHGV-0011003_53	UniRef90_A0A6N7TNQ4	680.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0011003_53	411471.SUBVAR_05137	249.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0011003_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0011003_53	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0011003_53	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0011003_55	476272.RUMHYD_01772	52.4	0.00000187	N/A	N/A
structural_annotation	UHGV-0011003_55	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_56	phrog_20016	206.1	0	N/A	unknown function
UniRef90	UHGV-0011003_56	UniRef90_A0A285PT46	202.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0011003_56	1226322.HMPREF1545_00077	183.0	0	N/A	N/A
structural_annotation	UHGV-0011003_56	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_58	phrog_16490	151.7	4.2039e-45	N/A	unknown function
eggNOG-mapper	UHGV-0011003_58	1408437.JNJN01000043_gene803	139.0	1.25e-37	N/A	N/A
PHROG	UHGV-0011003_59	phrog_22984	77.7	8.4e-23	N/A	unknown function
PHROG	UHGV-0011003_60	phrog_21718	109.8	2.1e-32	N/A	unknown function
eggNOG-mapper	UHGV-0011003_60	397290.C810_05210	76.3	0.00000000000000231	N/A	N/A
PHROG	UHGV-0011003_61	phrog_3754	92.3	4.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0011003_61	1485543.JMME01000025_gene2462	103.0	2.79e-27	N/A	N/A
UniRef90	UHGV-0011003_64	UniRef90_R6DRH1	94.0	1.38e-20	Putative TnpX site-specific recombinase	N/A
eggNOG-mapper	UHGV-0011003_64	742740.HMPREF9474_00056	106.0	4.5e-26	N/A	N/A
structural_annotation	UHGV-0011003_64	COG4068	N/A	N/A	N/A	N/A
UniRef90	UHGV-0011003_65	UniRef90_A0A7X2P872	64.7	0.000000000127	Ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-0011003_65	1033733.CAEK01000007_gene1628	85.1	2.65e-19	N/A	N/A
Pfam	UHGV-0011003_65	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0011003_65	PF16734,PF01402	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011003_66	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0011003_68	phrog_15303	80.8	1.3e-23	N/A	unknown function
PHROG	UHGV-0011003_69	phrog_1863	82.4	2.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0011003_69	718252.FP2_04900	137.0	2.03006e-41	N/A	N/A
KOfam	UHGV-0011003_70	K07273	169.2	0	acm; lysozyme	N/A
PHROG	UHGV-0011003_70	phrog_291	132.7	3.2e-39	endolysin	lysis
UniRef90	UHGV-0011003_70	UniRef90_UPI001D0EE7D8	294.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0011003_70	748224.HMPREF9436_00154	280.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0011003_70	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0011003_70	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0011003_70	PF01183,COG3757	N/A	N/A	N/A	N/A
Pfam	UHGV-0011003_71	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0011003	Yes	41,708	54	99	1
UHGV-0011052	No	34,476	53	82	1