vOTU vOTU-085590

vOTU: vOTU-085590

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-085590
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-09161 → vSUBGEN-10329 → vOTU-085590
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1443443
Biosample ID	N/A
Genome length (bp)	37,625 bps
CheckV completeness	99.90% (High-quality)
CDS count	51
CDS density	91.69%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	207	Host agreement	96.62
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	534	Host agreement	98.88

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1443443_1	UniRef90_A0A367FYP9	60.1	0.0000000000428	HTH luxR-type domain-containing protein	N/A
COG	UHGV-1443443_1	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
KOfam	UHGV-1443443_2	K14059	193.9	0	int; integrase	N/A
PHROG	UHGV-1443443_2	phrog_1	198.2	0	integrase	integration and excision
UniRef90	UHGV-1443443_2	UniRef90_UPI00195B6EEA	457.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1443443_2	643648.Slip_1975	180.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1443443_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1443443_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1443443_2	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1443443_2	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1443443_4	K07448	132.0	4.9e-39	mrr; restriction system protein	N/A
PHROG	UHGV-1443443_4	phrog_19856	55.8	6.1e-16	N/A	unknown function
UniRef90	UHGV-1443443_4	UniRef90_A0A367GFG0	241.0	0	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-1443443_4	397287.C807_03320	158.0	0	Restriction endonuclease	N/A
PADLOC	UHGV-1443443_4	ZorD1_00005	78.2	1e-22	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1443443_4	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-1443443_4	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
KOfam	UHGV-1443443_5	K01356	153.3	2.8026e-45	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1443443_5	phrog_4	118.8	5.7e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-1443443_5	UniRef90_A0A367GH86	472.0	0	Repressor LexA	N/A
eggNOG-mapper	UHGV-1443443_5	411483.FAEPRAA2165_03041	146.0	5.96e-41	N/A	N/A
Pfam	UHGV-1443443_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1443443_5	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1443443_5	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1443443_5	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-1443443_6	K22300	42.2	0.000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1443443_6	phrog_8	50.3	0.000000000000054	transcriptional regulator	transcription regulation
UniRef90	UHGV-1443443_6	UniRef90_A0A367GFH2	132.0	3.81e-39	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1443443_6	1235798.C817_01509	53.9	0.000000118	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1443443_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1443443_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1443443_6	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1443443_7	UniRef90_A0A367GHD7	150.0	0	HTH_17 domain-containing protein	N/A
Pfam	UHGV-1443443_7	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1443443_9	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_11	phrog_1733	60.6	1.5e-17	N/A	unknown function
UniRef90	UHGV-1443443_11	UniRef90_UPI00196846D9	182.0	0	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-1443443_11	665956.HMPREF1032_03597	208.0	0	DNA binding	N/A
COG	UHGV-1443443_11	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1443443_11	PF03677	N/A	N/A	N/A	N/A
KOfam	UHGV-1443443_12	K03546	49.3	0.000000000000046	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1443443_12	phrog_1499	460.9	0	N/A	unknown function
UniRef90	UHGV-1443443_12	UniRef90_A0A367GHQ5	816.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-1443443_12	1235798.C817_04766	511.0	0	AAA ATPase domain	N/A
Pfam	UHGV-1443443_12	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1443443_12	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1443443_12	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_13	phrog_124	228.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1443443_13	UniRef90_UPI00122C2B12	528.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1443443_13	1273103.NM10_06861	364.0	0	AAA domain	N/A
Pfam	UHGV-1443443_13	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1443443_13	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_14	phrog_2698	187.9	0	N/A	unknown function
UniRef90	UHGV-1443443_14	UniRef90_A0A367GFE7	339.0	0	N/A	N/A
eggNOG-mapper	UHGV-1443443_14	294382.Q5YA95_9CAUD	137.0	5.95e-39	N/A	N/A
structural_annotation	UHGV-1443443_14	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-1443443_15	K17677	347.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1443443_15	phrog_16	271.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1443443_15	UniRef90_A0A367GH68	1083.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1443443_15	610130.Closa_1369	760.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-1443443_15	mREase_IV_00005	136.1	2.8e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1443443_15	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1443443_15	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1443443_15	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1443443_15	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-1443443_16	K07505	367.2	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1443443_16	phrog_2597	1084.1	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1443443_16	UniRef90_A0A367GFF7	1527.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1443443_16	999413.HMPREF1094_00232	866.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1443443_16	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1443443_16	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1443443_16	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1443443_16	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-1443443_17	K01160	41.9	0.000000000024	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1443443_17	phrog_140	91.8	8.2e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1443443_17	UniRef90_A0A367GHC7	284.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1443443_17	394503.Ccel_3302	159.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1443443_17	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1443443_17	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1443443_17	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1443443_21	693746.OBV_18010	80.1	8.29e-17	N/A	N/A
structural_annotation	UHGV-1443443_21	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_22	phrog_338	60.7	3.1e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1443443_22	UniRef90_UPI0015F33F36	174.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1443443_22	748224.HMPREF9436_01465	175.0	0	N/A	N/A
PHROG	UHGV-1443443_23	phrog_1066	56.9	3.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1443443_23	445975.COLSTE_02166	76.3	7.92e-16	N/A	N/A
PHROG	UHGV-1443443_24	phrog_9	137.7	9.49996e-41	terminase large subunit	head and packaging
UniRef90	UHGV-1443443_24	UniRef90_UPI001D0087E2	459.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1443443_24	1410630.JNKP01000001_gene1822	637.0	0	phage terminase, large subunit	N/A
COG	UHGV-1443443_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1443443_24	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_25	phrog_104	219.2	0	portal protein	head and packaging
UniRef90	UHGV-1443443_25	UniRef90_A0A3E2U200	787.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1443443_25	748224.HMPREF9436_01468	756.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1443443_25	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1443443_25	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_26	phrog_193	122.0	5.2e-36	head maturation protease	head and packaging
UniRef90	UHGV-1443443_26	UniRef90_A0A6N8H118	531.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1443443_26	748224.HMPREF9436_01469	388.0	0	N/A	N/A
COG	UHGV-1443443_26	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-1443443_27	phrog_774	45.4	0.00000000000052	N/A	unknown function
eggNOG-mapper	UHGV-1443443_27	1042156.CXIVA_01820	55.8	0.00000000481	N/A	N/A
PHROG	UHGV-1443443_28	phrog_194	83.5	3.1e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-1443443_28	UniRef90_D4K444	154.0	1.82169e-44	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1443443_28	748224.HMPREF9436_03336	158.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-1443443_28	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1443443_28	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_29	phrog_10	140.6	1.40004e-41	major head protein	head and packaging
UniRef90	UHGV-1443443_29	UniRef90_A0A1Y4TJU9	509.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1443443_29	748224.HMPREF9436_00690	445.0	0	Phage capsid family	N/A
Pfam	UHGV-1443443_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1443443_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1443443_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1443443_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_31	phrog_137	54.2	0.0000000000000017	head-tail adaptor Ad1	connector
UniRef90	UHGV-1443443_31	UniRef90_E2ZGA8	162.0	0	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-1443443_31	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_32	phrog_501	74.6	1.3e-21	head closure Hc1	connector
eggNOG-mapper	UHGV-1443443_32	748224.HMPREF9436_00693	169.0	0	N/A	N/A
structural_annotation	UHGV-1443443_32	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_33	phrog_387	60.8	1.9e-17	neck protein	connector
eggNOG-mapper	UHGV-1443443_33	748224.HMPREF9436_00694	94.4	3.13e-24	N/A	N/A
PHROG	UHGV-1443443_34	phrog_123	64.4	1.9e-18	tail terminator	connector
UniRef90	UHGV-1443443_34	UniRef90_A0A2A5RIK6	88.2	2.35e-20	N/A	N/A
eggNOG-mapper	UHGV-1443443_34	1231377.C426_1732	90.5	4.86e-22	N/A	N/A
structural_annotation	UHGV-1443443_34	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_35	phrog_117	177.0	0	major tail protein	tail
UniRef90	UHGV-1443443_35	UniRef90_A0A1Q6T308	235.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1443443_35	748224.HMPREF9436_00696	218.0	0	domain, Protein	N/A
COG	UHGV-1443443_35	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1443443_35	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_36	phrog_1526	82.5	3.8e-24	N/A	unknown function
UniRef90	UHGV-1443443_36	UniRef90_D2BQF7	65.9	0.00000000000347	N/A	N/A
eggNOG-mapper	UHGV-1443443_36	879308.HMPREF9130_1240	78.6	7.12e-18	N/A	N/A
PHROG	UHGV-1443443_37	phrog_1633	73.7	1.2e-21	N/A	unknown function
UniRef90	UHGV-1443443_37	UniRef90_UPI000986795C	75.5	0.00000000000000317	N/A	N/A
eggNOG-mapper	UHGV-1443443_37	883110.HMPREF9260_00651	67.4	0.00000000000076	N/A	N/A
structural_annotation	UHGV-1443443_37	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_38	phrog_6900	253.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1443443_38	UniRef90_A0A1C5MMN2	386.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1443443_38	1280698.AUJS01000007_gene1047	377.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1443443_38	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1443443_38	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_39	phrog_1194	41.9	0.000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1443443_39	411471.SUBVAR_06933	104.0	3.83e-27	N/A	N/A
structural_annotation	UHGV-1443443_39	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_40	phrog_18190	86.9	3.3e-35	N/A	unknown function
eggNOG-mapper	UHGV-1443443_40	411471.SUBVAR_06932	313.0	0	N/A	N/A
structural_annotation	UHGV-1443443_40	PF05954,PF00629,PF03424,NF033848,NF033675,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_41	phrog_18444	79.4	2.7e-23	N/A	unknown function
UniRef90	UHGV-1443443_41	UniRef90_UPI0011788049	50.1	0.00000121	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-1443443_41	1294142.CINTURNW_1707	58.9	0.0000000000598	N/A	N/A
structural_annotation	UHGV-1443443_43	PF12245	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_44	phrog_31538	45.3	0.0000000000015	N/A	unknown function
eggNOG-mapper	UHGV-1443443_44	428125.CLOLEP_01433	57.0	0.00000000229	N/A	N/A
PHROG	UHGV-1443443_45	phrog_13589	183.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1443443_45	742733.HMPREF9469_05009	228.0	0	N/A	N/A
PHROG	UHGV-1443443_47	phrog_19111	54.6	0.0000000000000011	N/A	unknown function
eggNOG-mapper	UHGV-1443443_47	1232443.BAIA02000078_gene14	77.8	0.000000000000102	nuclear chromosome segregation	N/A
COG	UHGV-1443443_47	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-1443443_48	phrog_24267	58.2	1.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-1443443_48	508419.F8J176_9CAUD	114.0	2.36e-25	peptidoglycan catabolic process	N/A
Pfam	UHGV-1443443_48	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
Pfam	UHGV-1443443_48	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
KOfam	UHGV-1443443_49	K07273	177.9	0	acm; lysozyme	N/A
PHROG	UHGV-1443443_49	phrog_291	147.7	6.86636e-44	endolysin	lysis
UniRef90	UHGV-1443443_49	UniRef90_A0A367G061	530.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1443443_49	411471.SUBVAR_06927	315.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1443443_49	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-1443443_49	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1443443_49	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1443443_49	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1443443_50	phrog_1863	75.5	3.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-1443443_50	693746.OBV_18260	110.0	6.67e-31	N/A	N/A
PHROG	UHGV-1443443_51	phrog_1129	60.8	1.8e-17	holin	lysis
UniRef90	UHGV-1443443_51	UniRef90_A0A367FT42	166.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1443443_51	693746.OBV_13280	112.0	2.5e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1443443_51	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1443443_51	PF06946	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1443443	Yes	37,625	58	100	1
UHGV-1482750	No	36,768	58	100	1
UHGV-0133356	No	25,095	60	70	1
UHGV-1902091	No	18,328	61	50	1
UHGV-2187594	No	16,063	59	46	1