vOTU vOTU-085719

vOTU: vOTU-085719

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-085719
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01133 → vGENUS-01313 → vSUBGEN-09478 → vOTU-085719
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0171807
Biosample ID	N/A
Genome length (bp)	32,432 bps
CheckV completeness	98.12% (High-quality)
CDS count	63
CDS density	96.45%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355	Total connections	26	Host agreement	84.62
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	15	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0171807_1	phrog_119	60.1	3.8e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171807_1	UniRef90_A0A0D8IV26	84.3	5.52e-20	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0171807_1	1415774.U728_1257	63.5	0.00000000000282	HNH nucleases	N/A
Pfam	UHGV-0171807_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0171807_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0171807_3	742738.HMPREF9460_02503	87.4	1.32e-20	N/A	N/A
structural_annotation	UHGV-0171807_3	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_5	phrog_3584	127.4	1.2e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0171807_5	1203606.HMPREF1526_00985	65.9	0.000000000731	N/A	N/A
structural_annotation	UHGV-0171807_5	PF21578	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171807_7	UniRef90_A0A847E3M6	50.1	0.000000393	Ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-0171807_7	PF07878	N/A	N/A	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
structural_annotation	UHGV-0171807_7	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-0171807_8	K19779	40.7	0.000000000035	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0171807_8	phrog_599	49.7	0.000000000000081	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0171807_8	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0171807_8	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0171807_8	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
COG	UHGV-0171807_8	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
structural_annotation	UHGV-0171807_8	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_10	phrog_3136	127.0	7.7e-38	N/A	unknown function
UniRef90	UHGV-0171807_10	UniRef90_A0A6N7TMC2	126.0	3.02e-33	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0171807_10	97139.C824_00742	67.8	0.00000000000759	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0171807_10	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0171807_10	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_17	phrog_799	51.3	0.000000000000014	DNA methyltransferase	other
UniRef90	UHGV-0171807_17	UniRef90_A0A4U8T4F4	99.4	5.56e-23	Sugar-phosphate nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0171807_17	537971.HCCG_00428	92.0	3.72e-21	N/A	N/A
structural_annotation	UHGV-0171807_17	PF05869,MF_00607,NF000468,COG0030	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_18	phrog_757	137.3	8.30003e-41	DNA methyltransferase	other
UniRef90	UHGV-0171807_18	UniRef90_A0A3R6ATD0	264.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0171807_18	742733.HMPREF9469_01835	260.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0171807_18	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0171807_19	phrog_757	51.5	0.000000000000016	DNA methyltransferase	other
UniRef90	UHGV-0171807_19	UniRef90_A0A7J2R6L5	71.6	0.00000000000000264	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0171807_19	748224.HMPREF9436_03069	93.2	1.11e-22	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0171807_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0171807_20	phrog_24518	61.6	1.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0171807_20	1519439.JPJG01000077_gene922	60.5	0.0000000152	N/A	N/A
PHROG	UHGV-0171807_21	phrog_824	146.2	9.24857e-44	N/A	unknown function
UniRef90	UHGV-0171807_21	UniRef90_A0A6N8GXS9	170.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0171807_21	665956.HMPREF1032_00132	152.0	2.8026e-45	VRR_NUC	N/A
Pfam	UHGV-0171807_21	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
KOfam	UHGV-0171807_34	K18830	63.6	4.9e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0171807_34	phrog_8	55.1	9.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0171807_34	UniRef90_A0A1Q6RKG1	105.0	1.37e-26	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0171807_34	887325.HMPREF0381_0352	89.7	2.57e-21	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0171807_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171807_34	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0171807_34	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171807_36	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_37	phrog_353	68.3	7.9e-20	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0171807_37	UniRef90_A0A3E3K2T1	119.0	6.32e-34	Type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0171807_37	502558.EGYY_24930	110.0	3.44e-31	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0171807_37	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0171807_37	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0171807_37	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0171807_38	K18843	40.0	0.000000000073	hicB; antitoxin HicB	N/A
PHROG	UHGV-0171807_38	phrog_497	71.8	1.3e-20	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0171807_38	UniRef90_R9J2N5	205.0	0	HicB-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0171807_38	397287.C807_03671	205.0	0	Toxin-antitoxin system, antitoxin component, HicB family	N/A
Pfam	UHGV-0171807_38	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0171807_38	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0171807_38	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-0171807_39	K06400	337.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0171807_39	phrog_95	320.4	0	integrase	integration and excision
UniRef90	UHGV-0171807_39	UniRef90_UPI00106696FE	347.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0171807_39	665956.HMPREF1032_03589	350.0	0	N/A	N/A
Pfam	UHGV-0171807_39	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0171807_39	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0171807_39	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0171807_39	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0171807_39	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_40	phrog_199	65.7	5.8e-19	holin	lysis
UniRef90	UHGV-0171807_40	UniRef90_A0A3C0NPD5	183.0	0	Holin	N/A
eggNOG-mapper	UHGV-0171807_40	742738.HMPREF9460_01388	150.0	2.94273e-44	Bacteriophage holin family	N/A
Pfam	UHGV-0171807_40	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0171807_40	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0171807_40	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0171807_40	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_41	phrog_14030	166.8	0	N/A	unknown function
UniRef90	UHGV-0171807_41	UniRef90_A0A316NTC6	221.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0171807_41	641107.CDLVIII_3774	196.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-0171807_41	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0171807_41	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0171807_41	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0171807_41	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_46	phrog_16573	40.6	0.000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0171807_46	1160721.RBI_I01572	73.2	0.0000000000053	N/A	N/A
structural_annotation	UHGV-0171807_46	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_49	phrog_1067	319.3	0	minor head protein	head and packaging
UniRef90	UHGV-0171807_49	UniRef90_A0A1C6H6B4	479.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0171807_49	1123263.AUKY01000068_gene489	341.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0171807_49	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0171807_49	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0171807_49	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0171807_49	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_50	phrog_33	93.1	5.3e-27	distal tail protein Dit	tail
UniRef90	UHGV-0171807_50	UniRef90_A0A173Z1X4	181.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0171807_50	1154860.SAG0136_08140	85.9	1.99e-17	phage tail	N/A
Pfam	UHGV-0171807_50	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0171807_50	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0171807_50	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_51	phrog_6900	256.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0171807_51	UniRef90_A0A373CK98	275.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-0171807_51	573061.Clocel_3967	308.0	0	tape measure	N/A
COG	UHGV-0171807_51	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0171807_51	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_54	phrog_88	80.3	2.4e-23	major tail protein	tail
UniRef90	UHGV-0171807_54	UniRef90_UPI0018771F27	135.0	2.67e-36	phage tail protein	N/A
eggNOG-mapper	UHGV-0171807_54	33035.JPJF01000039_gene278	79.0	0.00000000000000226	N/A	N/A
structural_annotation	UHGV-0171807_54	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_55	phrog_5	41.0	0.000000000023	tail completion or Neck1 protein	connector
UniRef90	UHGV-0171807_55	UniRef90_A0A1C6FG30	139.0	4.11e-39	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0171807_55	908340.HMPREF9406_2573	129.0	9.88e-36	N/A	N/A
structural_annotation	UHGV-0171807_55	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171807_56	1232446.BAIE02000002_gene829	92.4	6.52e-23	N/A	N/A
structural_annotation	UHGV-0171807_56	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_57	phrog_19734	91.3	1e-26	N/A	unknown function
UniRef90	UHGV-0171807_57	UniRef90_A0A3E3E563	82.8	3.58e-18	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0171807_57	1235798.C817_04587	94.0	2.53e-23	N/A	N/A
structural_annotation	UHGV-0171807_57	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_58	phrog_2550	70.9	1.1e-20	N/A	unknown function
UniRef90	UHGV-0171807_58	UniRef90_UPI0008717716	92.0	2.07e-22	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0171807_58	1226322.HMPREF1545_00117	81.6	4.51e-19	N/A	N/A
structural_annotation	UHGV-0171807_58	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_59	phrog_10	200.6	0	major head protein	head and packaging
UniRef90	UHGV-0171807_59	UniRef90_A0A1C6H720	647.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0171807_59	1226322.HMPREF1545_00116	598.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0171807_59	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0171807_59	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0171807_59	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0171807_59	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0171807_60	K06904	150.4	1.54143e-44	N/A	N/A
PHROG	UHGV-0171807_60	phrog_80	176.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0171807_60	UniRef90_U2SBX0	233.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0171807_60	1226322.HMPREF1545_00115	233.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0171807_60	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0171807_60	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0171807_60	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0171807_60	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_61	phrog_12	175.2	0	portal protein	head and packaging
UniRef90	UHGV-0171807_61	UniRef90_A0A0D8IVL0	531.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0171807_61	1226322.HMPREF1545_00114	452.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0171807_61	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0171807_61	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0171807_61	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0171807_61	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_62	phrog_9	288.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0171807_62	UniRef90_A0A2V2GQ67	958.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0171807_62	1226322.HMPREF1545_00113	851.0	0	Phage Terminase	N/A
Pfam	UHGV-0171807_62	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0171807_62	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0171807_62	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0171807_62	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0171807_63	phrog_361	72.7	5.6e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0171807_63	UniRef90_UPI0004135207	63.2	0.000000000234	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0171807_63	1033744.CAEL01000029_gene1286	73.2	0.00000000000000477	Phage terminase, small subunit	N/A
Pfam	UHGV-0171807_63	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0171807_63	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0171807	Yes	32,432	55	98	1