vOTU vOTU-086013

vOTU: vOTU-086013

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-086013
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-02146 → vGENUS-05893 → vSUBGEN-03880 → vOTU-086013
Host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella sp002871655
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1500622
Biosample ID	SAMEA2738139
Genome length (bp)	33,254 bps
CheckV completeness	95.03% (High-quality)
CDS count	51
CDS density	94.42%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella sp002871655	Total connections	2	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Gemellaceae → Gemella → Gemella sanguinis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 95.03)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1500622_1	K14059	128.8	7.5e-38	int; integrase	N/A
PHROG	UHGV-1500622_1	phrog_1	135.7	4.79999e-40	integrase	integration and excision
UniRef90	UHGV-1500622_1	UniRef90_A0A2N6SEH4	532.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1500622_1	562981.HMPREF0428_01865	386.0	0	Phage integrase family	N/A
Pfam	UHGV-1500622_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1500622_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-1500622_2	phrog_5059	193.7	0	N/A	unknown function
UniRef90	UHGV-1500622_2	UniRef90_U2Q4J8	406.0	0	Cysteine protease domain, YopT-type	N/A
eggNOG-mapper	UHGV-1500622_2	1321820.HMPREF1983_01025	406.0	0	N/A	N/A
Pfam	UHGV-1500622_2	PF08861	N/A	N/A	N/A	DUF1828
Pfam	UHGV-1500622_2	PF08862	N/A	N/A	N/A	DUF1829
structural_annotation	UHGV-1500622_2	PF08862,PF08861,MF_00722,COG3372	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_3	phrog_30145	76.1	4.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-1500622_3	1321820.HMPREF1983_01026	223.0	0	N/A	N/A
KOfam	UHGV-1500622_4	K01356	156.4	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1500622_4	phrog_4	139.5	2.59997e-41	transcriptional repressor	transcription regulation
UniRef90	UHGV-1500622_4	UniRef90_A0A2N6SEH2	299.0	0	Repressor LexA	N/A
eggNOG-mapper	UHGV-1500622_4	562981.HMPREF0428_01863	252.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1500622_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1500622_4	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1500622_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1500622_4	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500622_5	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_10	phrog_3	41.4	0.000000000054	transcriptional repressor	transcription regulation
UniRef90	UHGV-1500622_10	UniRef90_A0A134A099	99.4	5.32e-26	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1500622_10	1123263.AUKY01000029_gene799	50.1	0.000000234	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1500622_10	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1500622_10	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1500622_10	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1500622_13	K01520	98.4	8.5e-29	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1500622_13	phrog_135	102.2	4.3e-30	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500622_13	UniRef90_A0A2N6SHA6	312.0	0	dUTPase domain-containing protein	N/A
eggNOG-mapper	UHGV-1500622_13	562981.HMPREF0428_01011	234.0	0	dUTPase	N/A
Pfam	UHGV-1500622_13	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-1500622_13	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1500622_13	PF00692,MF_00116,NF010561,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_15	phrog_98	67.4	1.8e-19	N/A	unknown function
UniRef90	UHGV-1500622_15	UniRef90_A0A2N6SEJ2	288.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1500622_15	1220589.CD32_00355	56.6	0.0000000239	YopX protein	N/A
Pfam	UHGV-1500622_15	PF09643	N/A	N/A	YopX protein	YopX
PHROG	UHGV-1500622_16	phrog_6493	104.5	7e-31	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500622_16	UniRef90_A0A0T8EL25	123.0	1.6e-28	Putative conjugative transposon protein	N/A
eggNOG-mapper	UHGV-1500622_16	1321820.HMPREF1983_00949	293.0	0	DnaD domain protein	N/A
COG	UHGV-1500622_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1500622_16	PF19481,PF02002,TIGR01889,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-1500622_17	K04763	103.4	2.8e-30	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1500622_17	phrog_216	156.4	0	integrase	integration and excision
UniRef90	UHGV-1500622_17	UniRef90_U2Q4Z2	355.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-1500622_17	1321820.HMPREF1983_00948	355.0	0	Phage integrase family	N/A
Pfam	UHGV-1500622_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1500622_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1500622_17	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1500622_18	K03111	134.8	1e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1500622_18	phrog_44	145.9	2.20004e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500622_18	UniRef90_A0A2N6SER4	271.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1500622_18	1321820.HMPREF1983_00947	187.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1500622_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1500622_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1500622_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1500622_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1500622_18	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_22	phrog_2044	86.7	1.6e-25	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500622_22	UniRef90_A0A0H3ZW01	83.6	1.88e-19	Putative DNA-directed RNA polymerase, beta' subunit/160 kD subunit	N/A
eggNOG-mapper	UHGV-1500622_22	1120977.JHUX01000003_gene832	82.8	5.86e-20	N/A	N/A
structural_annotation	UHGV-1500622_22	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_23	phrog_1891	117.3	1.1e-34	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500622_23	UniRef90_A0A2N6SHB7	243.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1500622_23	546275.FUSPEROL_02054	106.0	3.28e-27	HNH endonuclease	N/A
Pfam	UHGV-1500622_23	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1500622_23	PF13392	N/A	N/A	N/A	N/A
UniRef90	UHGV-1500622_24	UniRef90_A0A2N6SHB3	103.0	6.42e-28	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1500622_24	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1500622_24	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_29	phrog_36	53.6	0.0000000000000039	transcriptional regulator	transcription regulation
UniRef90	UHGV-1500622_29	UniRef90_A0A2X4N3V1	220.0	0	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-1500622_29	PF08281,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_30	phrog_338	106.1	3.9e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500622_30	UniRef90_A0A2N6SCF6	232.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1500622_30	1321820.HMPREF1983_00938	190.0	0	HNH endonuclease	N/A
Pfam	UHGV-1500622_30	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1500622_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1500622_30	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_31	phrog_104	294.5	0	portal protein	head and packaging
UniRef90	UHGV-1500622_31	UniRef90_A0A4J1ZT89	719.0	0	Gp34	N/A
eggNOG-mapper	UHGV-1500622_31	1321820.HMPREF1983_00937	837.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1500622_31	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_32	phrog_2494	327.2	0	minor head protein	head and packaging
UniRef90	UHGV-1500622_32	UniRef90_U2RW86	631.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1500622_32	1321820.HMPREF1983_00936	631.0	0	N/A	N/A
Pfam	UHGV-1500622_32	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
structural_annotation	UHGV-1500622_32	PF18451	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_33	phrog_17688	495.9	0	N/A	unknown function
UniRef90	UHGV-1500622_33	UniRef90_U2S4W8	892.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1500622_33	1321820.HMPREF1983_00935	892.0	0	phage terminase, large subunit	N/A
COG	UHGV-1500622_33	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1500622_33	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_34	phrog_233	119.7	3.1e-35	head scaffolding protein	head and packaging
UniRef90	UHGV-1500622_34	UniRef90_A0A2N6SCG6	266.0	0	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-1500622_34	1321820.HMPREF1983_00934	197.0	0	N/A	N/A
structural_annotation	UHGV-1500622_34	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_35	phrog_32396	164.9	0	N/A	unknown function
UniRef90	UHGV-1500622_35	UniRef90_A0A2N6SCF3	585.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1500622_35	1214184.ALKY01000039_gene918	473.0	0	Phage capsid family	N/A
NCBIFam	UHGV-1500622_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1500622_35	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_37	phrog_137	101.8	4e-30	head-tail adaptor Ad1	connector
UniRef90	UHGV-1500622_37	UniRef90_U2RW81	222.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1500622_37	1321820.HMPREF1983_00931	222.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1500622_37	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1500622_37	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_38	phrog_501	100.6	1.1e-29	head closure Hc1	connector
UniRef90	UHGV-1500622_38	UniRef90_Q7Y4I1	160.0	0	Gp43	N/A
eggNOG-mapper	UHGV-1500622_38	1321820.HMPREF1983_00930	188.0	0	N/A	N/A
structural_annotation	UHGV-1500622_38	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_39	phrog_387	91.8	4.5e-27	neck protein	connector
UniRef90	UHGV-1500622_39	UniRef90_A0A380KNT4	81.6	9.36e-19	N/A	N/A
eggNOG-mapper	UHGV-1500622_39	1321820.HMPREF1983_00929	114.0	2.34e-32	N/A	N/A
PHROG	UHGV-1500622_40	phrog_123	64.0	2.6e-18	tail terminator	connector
UniRef90	UHGV-1500622_40	UniRef90_A0A139QID5	127.0	9.68e-36	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1500622_40	1321820.HMPREF1983_00928	177.0	0	N/A	N/A
structural_annotation	UHGV-1500622_40	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_41	phrog_117	182.6	0	major tail protein	tail
UniRef90	UHGV-1500622_41	UniRef90_U2QNN1	315.0	0	Prophage LambdaSa1, structural protein	N/A
eggNOG-mapper	UHGV-1500622_41	1321820.HMPREF1983_00927	315.0	0	domain, Protein	N/A
COG	UHGV-1500622_41	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500622_41	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_42	phrog_1526	103.5	1.1e-30	N/A	unknown function
UniRef90	UHGV-1500622_42	UniRef90_A0A4U9XM96	94.7	1.16e-23	N/A	N/A
eggNOG-mapper	UHGV-1500622_42	1321820.HMPREF1983_00926	127.0	2.32e-37	N/A	N/A
PHROG	UHGV-1500622_43	phrog_1633	172.4	0	N/A	unknown function
UniRef90	UHGV-1500622_43	UniRef90_A0A139NAW5	152.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-1500622_43	1321820.HMPREF1983_00925	184.0	0	N/A	N/A
Pfam	UHGV-1500622_43	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1500622_43	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_44	phrog_58	388.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1500622_44	UniRef90_A0A2N6SDE9	1261.0	0	PblA	N/A
eggNOG-mapper	UHGV-1500622_44	1321820.HMPREF1983_00924	852.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-1500622_44	PF04513	N/A	N/A	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
COG	UHGV-1500622_44	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500622_44	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_45	phrog_33	68.9	1.1e-19	distal tail protein Dit	tail
UniRef90	UHGV-1500622_45	UniRef90_A0A2N6SFF3	448.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1500622_45	1321820.HMPREF1983_00923	296.0	0	tail component	N/A
COG	UHGV-1500622_45	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1500622_45	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_46	phrog_2270	485.3	0	N/A	unknown function
UniRef90	UHGV-1500622_46	UniRef90_K8MRB6	434.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-1500622_46	1321820.HMPREF1983_00921	569.0	0	N/A	N/A
Pfam	UHGV-1500622_46	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1500622_46	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1500622_46	PF14594,PF03422,PF17994,MF_00813,TIGR01665,NF033675,TIGR03511,TIGR02961,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1500622_47	1321820.HMPREF1983_00920	85.1	6.18e-21	N/A	N/A
PHROG	UHGV-1500622_48	phrog_199	69.1	5.5e-20	holin	lysis
UniRef90	UHGV-1500622_48	UniRef90_A0A2N6SDC1	234.0	0	Holin	N/A
eggNOG-mapper	UHGV-1500622_48	562981.HMPREF0428_01805	153.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1500622_48	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1500622_48	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1500622_48	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_49	phrog_32123	349.1	0	N/A	unknown function
UniRef90	UHGV-1500622_49	UniRef90_UPI00094EEBC2	368.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1500622_49	997830.HMPREF1124_0614	335.0	0	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-1500622_49	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
structural_annotation	UHGV-1500622_49	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_50	phrog_962	81.7	1e-23	holin	lysis
UniRef90	UHGV-1500622_50	UniRef90_A0A2N6SFH9	141.0	2.54055e-42	Phage holin	N/A
eggNOG-mapper	UHGV-1500622_50	1449338.JQLU01000005_gene3786	88.6	5.57e-22	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-1500622_50	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-1500622_50	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-1500622_50	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500622_50	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-1500622_51	phrog_1309	250.4	0	endolysin	lysis
UniRef90	UHGV-1500622_51	UniRef90_A0A2N6SFJ0	494.0	0	Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-1500622_51	1321820.HMPREF1983_00914	401.0	0	CHAP domain	N/A
Pfam	UHGV-1500622_51	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1500622_51	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-1500622_51	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1500622_51	PF08460,PF05382,TIGR02219,COG0791	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1500622	Yes	33,254	32	95	1
UHGV-0153007	No	19,741	33	57	1