vOTU vOTU-086285

vOTU: vOTU-086285

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-086285
Number of genomes	10
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00034 → vSUBGEN-21357 → vOTU-086285
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1403902
Biosample ID	SAMN05414978
Genome length (bp)	39,031 bps
CheckV completeness	92.30% (High-quality)
CDS count	65
CDS density	92.28%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	636	Host agreement	97.48
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 92.3)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1403902_1	phrog_27197	82.6	4e-24	N/A	unknown function
eggNOG-mapper	UHGV-1403902_1	394503.Ccel_3068	55.5	0.000000105	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1403902_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1403902_1	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1403902_3	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1403902_4	PF09537	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_7	phrog_561	127.5	1.2e-37	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1403902_7	UniRef90_UPI0011C8A287	151.0	1.01034e-42	recombinase RecT	N/A
eggNOG-mapper	UHGV-1403902_7	563192.HMPREF0179_00147	151.0	9.26959e-42	N/A	N/A
structural_annotation	UHGV-1403902_7	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1403902_8	K03111	146.3	2.90069e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1403902_8	phrog_44	139.5	3.00018e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1403902_8	UniRef90_UPI001D0F2FBF	208.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1403902_8	748224.HMPREF9436_00638	202.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1403902_8	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1403902_8	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1403902_8	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1403902_8	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1403902_8	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_9	phrog_15768	127.2	1.3e-37	N/A	unknown function
UniRef90	UHGV-1403902_9	UniRef90_A0A844D5V0	172.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1403902_9	748224.HMPREF9436_03357	148.0	7.72998e-41	N/A	N/A
Pfam	UHGV-1403902_9	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1403902_10	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_12	phrog_757	179.8	0	DNA methyltransferase	other
UniRef90	UHGV-1403902_12	UniRef90_A0A417JTT5	295.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1403902_12	1095750.HMPREF9970_0173	229.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1403902_12	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1403902_12	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_13	phrog_424	91.7	6.9e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1403902_13	445972.ANACOL_01819	441.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-1403902_13	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1403902_13	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1403902_14	K01160	57.1	5.5e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1403902_14	phrog_34	58.7	1.2e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1403902_14	UniRef90_A0A6N7TND6	222.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1403902_14	875454.BAEW01000002_gene491	138.0	1.10001e-40	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1403902_14	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1403902_14	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1403902_14	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_15	phrog_36	71.9	1e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1403902_15	UniRef90_A0A6N7TNN9	269.0	0	N/A	N/A
eggNOG-mapper	UHGV-1403902_15	748224.HMPREF9436_01463	77.8	3.17e-16	N/A	N/A
Pfam	UHGV-1403902_15	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1403902_15	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-1403902_16	UniRef90_UPI0018CC2891	118.0	5.16e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1403902_16	1235790.C805_00037	111.0	5.2e-29	N/A	N/A
structural_annotation	UHGV-1403902_16	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-1403902_17	K06909	140.7	1.29998e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1403902_17	phrog_10250	172.1	0	N/A	unknown function
UniRef90	UHGV-1403902_17	UniRef90_A0A844D8I4	837.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1403902_17	411490.ANACAC_00783	489.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1403902_17	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1403902_17	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1403902_17	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1403902_17	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_18	phrog_64	120.7	5.6e-36	portal protein	head and packaging
UniRef90	UHGV-1403902_18	UniRef90_A0A6N7TNT3	888.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1403902_18	642492.Clole_2764	79.7	0.000000000000404	phage portal protein, SPP1	N/A
Pfam	UHGV-1403902_18	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1403902_18	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_20	phrog_2468	78.8	4.1e-23	head morphogenesis	head and packaging
UniRef90	UHGV-1403902_20	UniRef90_A0A6N7TLR7	619.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1403902_20	1504822.CCNO01000013_gene286	107.0	6.78e-23	cell adhesion	N/A
Pfam	UHGV-1403902_20	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1403902_20	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1403902_20	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
UniRef90	UHGV-1403902_22	UniRef90_UPI001C015BED	124.0	6.43e-36	N/A	N/A
eggNOG-mapper	UHGV-1403902_22	1423790.BN53_04265	55.5	0.000000037	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-1403902_22	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1403902_22	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-1403902_23	phrog_8680	106.8	1.4e-31	N/A	unknown function
UniRef90	UHGV-1403902_23	UniRef90_A0A844D688	267.0	0	N/A	N/A
eggNOG-mapper	UHGV-1403902_23	411902.CLOBOL_05725	114.0	5.54e-31	N/A	N/A
Pfam	UHGV-1403902_23	PF14386	N/A	N/A	N/A	DUF4417
PHROG	UHGV-1403902_26	phrog_5	45.5	0.0000000000017	tail completion or Neck1 protein	connector
UniRef90	UHGV-1403902_26	UniRef90_A0A6N7TNP6	282.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1403902_26	1123309.AQYB01000018_gene814	90.1	4.48e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-1403902_26	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_29	phrog_544	131.0	9.3e-39	major head protein	head and packaging
UniRef90	UHGV-1403902_29	UniRef90_A0A395X7A1	370.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1403902_29	476272.RUMHYD_01776	301.0	0	N/A	N/A
structural_annotation	UHGV-1403902_29	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_31	phrog_17977	40.8	0.000000000029	N/A	unknown function
UniRef90	UHGV-1403902_31	UniRef90_A0A844DHJ8	116.0	2.67e-31	Phage head closure protein	N/A
structural_annotation	UHGV-1403902_31	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1403902_32	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_33	phrog_885	71.3	1.1e-20	major tail protein	tail
eggNOG-mapper	UHGV-1403902_33	1111121.HMPREF1247_0789	152.0	2.8026e-44	N/A	N/A
structural_annotation	UHGV-1403902_33	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_36	phrog_28775	131.7	2.4e-40	tail length tape measure protein	tail
UniRef90	UHGV-1403902_36	UniRef90_A0A6N7TLD3	1088.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1403902_36	1492737.FEM08_12070	141.0	3.52e-32	tape measure	N/A
Pfam	UHGV-1403902_36	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1403902_36	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1403902_36	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1403902_36	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-1403902_37	UniRef90_A0A413WS74	90.1	3.47e-18	MtfA protein	N/A
eggNOG-mapper	UHGV-1403902_37	1235792.C808_00094	116.0	7.36e-29	phage tail	N/A
COG	UHGV-1403902_37	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1403902_37	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_38	phrog_3558	208.1	0	tail protein	tail
UniRef90	UHGV-1403902_38	UniRef90_UPI001C01D15B	157.0	1.75e-37	phage tail protein	N/A
eggNOG-mapper	UHGV-1403902_38	1235799.C818_04233	100.0	1.3e-19	Prophage endopeptidase tail	N/A
Pfam	UHGV-1403902_38	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1403902_38	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1403902_38	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1403902_39	657322.FPR_13530	61.6	0.000000163	domain, Protein	N/A
COG	UHGV-1403902_39	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_40	phrog_2310	62.1	4.6e-18	N/A	unknown function
KOfam	UHGV-1403902_41	K07273	156.6	0	acm; lysozyme	N/A
PHROG	UHGV-1403902_41	phrog_291	114.7	8.7e-34	endolysin	lysis
UniRef90	UHGV-1403902_41	UniRef90_A0A564U0D3	310.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1403902_41	718252.FP2_04890	286.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1403902_41	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1403902_41	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1403902_41	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_43	phrog_15303	117.4	5.5e-35	N/A	unknown function
Pfam	UHGV-1403902_43	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-1403902_44	K24213	78.4	5.2e-23	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1403902_44	phrog_5073	107.0	1.6e-31	tail fiber protein	tail
eggNOG-mapper	UHGV-1403902_44	411483.FAEPRAA2165_00757	159.0	1.23999e-40	N/A	N/A
Pfam	UHGV-1403902_44	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1403902_47	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_48	phrog_99	51.4	0.000000000000015	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1403902_48	UniRef90_A0A0K9N8D8	91.3	1.13e-18	Putative AP2 domain protein	N/A
eggNOG-mapper	UHGV-1403902_48	742740.HMPREF9474_00071	89.0	1.36e-18	N/A	N/A
Pfam	UHGV-1403902_48	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-1403902_48	PF18337,PF00847	N/A	N/A	N/A	N/A
COG	UHGV-1403902_49	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1403902_49	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_51	phrog_3754	100.8	1.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-1403902_51	1235790.C805_00054	114.0	5.61e-31	N/A	N/A
PHROG	UHGV-1403902_52	phrog_21718	124.1	8.5e-37	N/A	unknown function
eggNOG-mapper	UHGV-1403902_52	397290.C810_05210	102.0	2.66e-25	N/A	N/A
PHROG	UHGV-1403902_53	phrog_22984	76.3	2.3e-22	N/A	unknown function
PHROG	UHGV-1403902_54	phrog_16490	150.6	8.40779e-45	N/A	unknown function
eggNOG-mapper	UHGV-1403902_54	1408437.JNJN01000043_gene803	142.0	6.03e-39	N/A	N/A
PHROG	UHGV-1403902_55	phrog_20016	206.7	0	N/A	unknown function
UniRef90	UHGV-1403902_55	UniRef90_A0A285PT46	214.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1403902_55	1226322.HMPREF1545_00077	188.0	0	N/A	N/A
structural_annotation	UHGV-1403902_55	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1403902_56	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1403902_58	K14059	141.7	8.00001e-42	int; integrase	N/A
PHROG	UHGV-1403902_58	phrog_1	165.8	0	integrase	integration and excision
UniRef90	UHGV-1403902_58	UniRef90_A0A6N7TNQ4	740.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1403902_58	411471.SUBVAR_05137	261.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1403902_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1403902_58	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1403902_58	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1403902_59	UniRef90_A0A6N7TLT0	357.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1403902_59	266265.Bxe_A3948	51.2	0.00000266	Helix-turn-helix domain	N/A
Pfam	UHGV-1403902_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1403902_59	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1403902_59	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1403902_62	phrog_888	116.0	2.5e-35	N/A	unknown function
UniRef90	UHGV-1403902_62	UniRef90_A0A6N7TMA2	410.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1403902_62	999411.HMPREF1092_03312	83.2	2.54e-16	Short C-terminal domain	N/A
Pfam	UHGV-1403902_62	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-1403902_62	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1403902_62	PF15947,PF14471	N/A	N/A	N/A	N/A
UniRef90	UHGV-1403902_65	UniRef90_A0A8D9UHB1	55.8	0.00000004	Repressor protein CI	N/A
eggNOG-mapper	UHGV-1403902_65	1226322.HMPREF1545_00148	53.9	0.0000000518	Transcriptional	N/A
COG	UHGV-1403902_65	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1403902	Yes	39,031	55	92	1
UHGV-1458328	No	34,433	55	81	1
UHGV-1447608	No	24,576	55	58	1
UHGV-0201880	No	24,282	55	57	1
UHGV-1468020	No	23,911	55	57	1
UHGV-0149736	No	19,952	56	47	1
UHGV-1734054	No	14,950	56	35	1
UHGV-0149739	No	13,069	55	31	1
UHGV-0150500	No	11,896	54	28	1
UHGV-1603507	No	11,818	55	28	1