vOTU vOTU-086978

vOTU: vOTU-086978

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-086978
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-03984 → vGENUS-16483 → vSUBGEN-29790 → vOTU-086978
Host lineage	Bacteria → Firmicutes_A → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → Eubacterium callanderi
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0213292
Biosample ID	SAMN10290199
Genome length (bp)	35,748 bps
CheckV completeness	99.84% (High-quality)
CDS count	53
CDS density	91.70%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → Eubacterium callanderi	Total connections	66	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0213292_1	phrog_9	293.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0213292_1	UniRef90_A0A3E2WD31	703.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0213292_1	1232453.BAIF02000028_gene2720	703.0	0	Phage Terminase	N/A
Pfam	UHGV-0213292_1	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0213292_1	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0213292_1	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0213292_1	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0213292_2	phrog_12	175.6	0	portal protein	head and packaging
UniRef90	UHGV-0213292_2	UniRef90_A0A8G1TPJ1	555.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0213292_2	1235798.C817_04583	521.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0213292_2	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0213292_2	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0213292_2	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0213292_2	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0213292_3	K06904	147.4	1.20512e-43	N/A	N/A
PHROG	UHGV-0213292_3	phrog_80	174.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0213292_3	UniRef90_A0A3D1FL96	288.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0213292_3	33035.JPJF01000039_gene272	281.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0213292_3	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0213292_3	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0213292_3	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0213292_3	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0213292_4	phrog_10	176.7	0	major head protein	head and packaging
UniRef90	UHGV-0213292_4	UniRef90_A0A143XZI6	527.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0213292_4	1235798.C817_04585	426.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0213292_4	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0213292_4	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0213292_4	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0213292_4	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0213292_5	phrog_2550	82.2	3.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0213292_5	1235798.C817_04586	97.4	3.14e-25	N/A	N/A
structural_annotation	UHGV-0213292_5	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0213292_6	phrog_19734	119.6	1.8e-35	N/A	unknown function
UniRef90	UHGV-0213292_6	UniRef90_A0A3R6AW46	122.0	7.08e-34	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0213292_6	1232446.BAIE02000002_gene828	114.0	3.3e-31	N/A	N/A
structural_annotation	UHGV-0213292_6	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0213292_7	phrog_78	45.2	0.0000000000018	tail terminator	connector
eggNOG-mapper	UHGV-0213292_7	1232446.BAIE02000002_gene829	107.0	1.07e-28	N/A	N/A
structural_annotation	UHGV-0213292_7	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213292_8	UniRef90_R6UNR2	138.0	7.62e-39	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0213292_8	1235798.C817_04589	147.0	2.95674e-43	N/A	N/A
structural_annotation	UHGV-0213292_8	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0213292_9	phrog_88	82.7	4.2e-24	major tail protein	tail
UniRef90	UHGV-0213292_9	UniRef90_A0A8G1TSY7	268.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0213292_9	33035.JPJF01000039_gene278	268.0	0	N/A	N/A
NCBIFam	UHGV-0213292_9	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0213292_9	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213292_10	33035.JPJF01000039_gene279	56.6	0.0000000293	N/A	N/A
structural_annotation	UHGV-0213292_10	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0213292_11	K10421	52.0	0.0000000000000064	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0213292_11	phrog_23464	260.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0213292_11	1232446.BAIE02000002_gene834	263.0	0	tape measure	N/A
COG	UHGV-0213292_11	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0213292_11	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0213292_12	phrog_33	81.2	2.1e-23	distal tail protein Dit	tail
UniRef90	UHGV-0213292_12	UniRef90_A0A3R6C171	237.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0213292_12	1235798.C817_02569	229.0	0	tail component	N/A
NCBIFam	UHGV-0213292_12	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0213292_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0213292_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0213292_13	phrog_13289	606.8	0	tail protein	tail
UniRef90	UHGV-0213292_13	UniRef90_A0A143Y1L9	807.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0213292_13	1235798.C817_04594	536.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0213292_13	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0213292_13	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0213292_13	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0213292_13	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0213292_14	phrog_19280	60.8	9.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0213292_14	1160721.RBI_I01572	71.6	0.0000000000535	N/A	N/A
Pfam	UHGV-0213292_14	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
UniRef90	UHGV-0213292_15	UniRef90_A0A521IRB0	63.2	0.00000000114	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0213292_15	1203606.HMPREF1526_01926	72.8	0.000000000000242	N/A	N/A
PHROG	UHGV-0213292_16	phrog_1009	41.4	0.000000000023	N/A	unknown function
PHROG	UHGV-0213292_17	phrog_962	51.9	0.000000000000014	holin	lysis
UniRef90	UHGV-0213292_17	UniRef90_UPI001D064E64	174.0	0	phage holin	N/A
eggNOG-mapper	UHGV-0213292_17	903814.ELI_0061	72.8	0.00000000000000101	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0213292_17	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0213292_17	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0213292_17	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213292_17	PF04531,COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-0213292_18	K07273	174.7	0	acm; lysozyme	N/A
PHROG	UHGV-0213292_18	phrog_291	190.3	0	endolysin	lysis
UniRef90	UHGV-0213292_18	UniRef90_A0A2A5T8U6	674.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0213292_18	1127131.WEISSC39_10855	226.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0213292_18	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0213292_18	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0213292_18	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0213292_18	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0213292_19	phrog_5978	390.8	0	N/A	unknown function
UniRef90	UHGV-0213292_19	UniRef90_A0A2T5IHM4	476.0	0	Fic family protein	N/A
eggNOG-mapper	UHGV-0213292_19	768706.Desor_5173	469.0	0	PFAM Fic DOC family	N/A
Pfam	UHGV-0213292_19	PF13784	N/A	N/A	Fic/DOC family N-terminal	Fic_N
Pfam	UHGV-0213292_19	PF02661	N/A	N/A	Fic/DOC family	Fic
COG	UHGV-0213292_19	COG3177	N/A	N/A	Fic family protein	N/A
structural_annotation	UHGV-0213292_19	PF02661,PF13784,PF21248,MF_01819,NF040876,COG3177	N/A	N/A	N/A	N/A
KOfam	UHGV-0213292_20	K14059	243.2	0	int; integrase	N/A
PHROG	UHGV-0213292_20	phrog_1	208.5	0	integrase	integration and excision
UniRef90	UHGV-0213292_20	UniRef90_A0A2N2BR10	317.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0213292_20	903814.ELI_3152	299.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0213292_20	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0213292_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0213292_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0213292_20	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213292_21	UniRef90_A0A4P9CDD6	495.0	0	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0213292_21	903814.ELI_0177	162.0	5.46506e-44	Cell Wall Hydrolase	N/A
COG	UHGV-0213292_21	COG3583	N/A	N/A	N/A	N/A
KOfam	UHGV-0213292_24	K01356	84.3	2.1e-24	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0213292_24	phrog_4	115.9	3.3e-34	transcriptional repressor	transcription regulation
UniRef90	UHGV-0213292_24	UniRef90_A0A4P9C7Y3	470.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0213292_24	1235792.C808_03098	169.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0213292_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0213292_24	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0213292_24	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0213292_24	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0213292_26	K18830	65.3	1.1e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0213292_26	phrog_8	51.3	0.000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213292_26	UniRef90_A0A1I5IQU6	238.0	0	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0213292_26	903814.ELI_3146	174.0	0	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0213292_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0213292_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0213292_26	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213292_28	PF13248	N/A	N/A	N/A	N/A
PHROG	UHGV-0213292_29	phrog_17280	52.4	0.0000000000000098	N/A	unknown function
UniRef90	UHGV-0213292_29	UniRef90_UPI00112E3F76	57.4	0.00000000234	dual specificity protein phosphatase family protein	N/A
eggNOG-mapper	UHGV-0213292_29	1140001.I571_01736	52.4	0.0000000345	N/A	N/A
PHROG	UHGV-0213292_32	phrog_7338	49.3	0.000000000000072	N/A	unknown function
UniRef90	UHGV-0213292_32	UniRef90_A0A1I5LXP2	100.0	2.04e-25	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0213292_32	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-0213292_41	phrog_3584	206.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0213292_41	887929.HMP0721_1280	171.0	0	N/A	N/A
structural_annotation	UHGV-0213292_41	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0213292_43	K07741	52.2	0.000000000000021	antB; anti-repressor protein	N/A
PHROG	UHGV-0213292_43	phrog_4608	125.1	6e-37	anti-repressor	transcription regulation
UniRef90	UHGV-0213292_43	UniRef90_A0A1H0WAW8	510.0	0	Phage antirepressor protein YoqD, KilAC domain	N/A
eggNOG-mapper	UHGV-0213292_43	1122147.AUEH01000021_gene610	150.0	1.79997e-41	SOS response	N/A
Pfam	UHGV-0213292_43	PF10543	N/A	N/A	ORF6N domain	ORF6N
Pfam	UHGV-0213292_43	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0213292_43	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0213292_43	PF03374,PF10543,TIGR02681,COG3645	N/A	N/A	N/A	N/A
KOfam	UHGV-0213292_45	K03700	90.1	3.2e-26	recU; recombination protein U	N/A
PHROG	UHGV-0213292_45	phrog_843	146.3	9.94922e-44	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213292_45	UniRef90_A0A1H0W5Y9	341.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0213292_45	537013.CLOSTMETH_01720	158.0	0	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0213292_45	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0213292_45	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0213292_45	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213292_49	1196322.A370_04910	75.1	0.0000000000000729	N/A	N/A
UniRef90	UHGV-0213292_50	UniRef90_UPI001EDCAABA	63.5	0.000000000237	N/A	N/A
PHROG	UHGV-0213292_51	phrog_997	48.0	0.00000000000023	replication terminator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0213292_51	903814.ELI_3228	50.8	0.00000164	N/A	N/A
PHROG	UHGV-0213292_53	phrog_36	79.9	3.8e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213292_53	UniRef90_UPI001D05F87A	210.0	0	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0213292_53	1540257.JQMW01000004_gene433	155.0	0	N/A	N/A
structural_annotation	UHGV-0213292_53	PF07374	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0213292	Yes	35,748	45	100	1