vOTU vOTU-087189

vOTU: vOTU-087189

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-087189
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vOTU-087189
Host lineage
Host range breadth
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1526079
Biosample ID	SAMEA2738144
Genome length (bp)	23,727 bps
CheckV completeness	76.86% (Medium-quality)
CDS count	42
CDS density	95.16%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1526079_3	COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_4	phrog_1067	375.6	0	minor head protein	head and packaging
UniRef90	UHGV-1526079_4	UniRef90_UPI0006925FC0	318.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1526079_4	272562.CA_C0063	265.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1526079_4	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-1526079_4	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1526079_4	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1526079_4	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1526079_4	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1526079_5	UniRef90_A0A1M5SC50	102.0	5.76e-23	Putative phage tail component, N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1526079_5	1540257.JQMW01000009_gene3383	75.9	0.000000000000444	N/A	N/A
COG	UHGV-1526079_5	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1526079_5	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_6	phrog_8125	157.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1526079_6	UniRef90_R6GII4	283.0	0	Immunity-specific protein Beta241	N/A
eggNOG-mapper	UHGV-1526079_6	1160721.RBI_I01576	219.0	0	tail tape measure protein, TP901	N/A
Pfam	UHGV-1526079_6	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1526079_6	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1526079_6	PF06791,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_9	phrog_885	106.4	2.2e-31	major tail protein	tail
UniRef90	UHGV-1526079_9	UniRef90_A0A7C6X6S5	129.0	2.74e-33	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1526079_9	1160721.RBI_I01578	168.0	0	N/A	N/A
structural_annotation	UHGV-1526079_9	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_10	phrog_957	52.7	0.0000000000000056	head protein	head and packaging
structural_annotation	UHGV-1526079_10	PF11367	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1526079_11	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_12	phrog_1951	73.1	3.2e-21	head-tail adaptor	connector
UniRef90	UHGV-1526079_12	UniRef90_A0A6B0DZN9	68.2	0.00000000000129	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1526079_12	1160721.RBI_I01580	83.2	1.84e-19	head-tail adaptor	N/A
COG	UHGV-1526079_12	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1526079_12	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_13	phrog_5223	104.7	3.6e-31	neck protein	connector
UniRef90	UHGV-1526079_13	UniRef90_A0A4R3N2Q5	95.1	1.16e-23	Putative phage protein (Predicted DNA packaging)	N/A
eggNOG-mapper	UHGV-1526079_13	1382358.JHVN01000024_gene1709	94.0	5.11e-24	N/A	N/A
NCBIFam	UHGV-1526079_13	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1526079_13	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_14	phrog_10	148.0	7.9874e-44	major head protein	head and packaging
UniRef90	UHGV-1526079_14	UniRef90_A0A316PXV5	289.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1526079_14	1297617.JPJD01000020_gene308	289.0	0	Phage capsid family	N/A
Pfam	UHGV-1526079_14	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1526079_14	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1526079_14	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1526079_14	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1526079_15	K06904	124.8	8.7e-37	N/A	N/A
PHROG	UHGV-1526079_15	phrog_80	147.3	1.30321e-43	head maturation protease	head and packaging
UniRef90	UHGV-1526079_15	UniRef90_A0A2N2DQ29	190.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1526079_15	1211817.CCAT010000007_gene1038	181.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1526079_15	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1526079_15	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1526079_15	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1526079_15	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_17	phrog_12	142.7	2.10055e-42	portal protein	head and packaging
UniRef90	UHGV-1526079_17	UniRef90_A0A7X7AAU2	361.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1526079_17	411470.RUMGNA_02063	320.0	0	Phage portal protein	N/A
Pfam	UHGV-1526079_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1526079_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1526079_17	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_18	phrog_9	430.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1526079_18	UniRef90_A0A1B1YAC1	683.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1526079_18	1094508.Tsac_2427	666.0	0	Phage Terminase	N/A
Pfam	UHGV-1526079_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1526079_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1526079_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1526079_18	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_19	phrog_1066	59.5	6.3e-17	N/A	unknown function
KOfam	UHGV-1526079_21	K07451	49.4	0.000000000000082	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1526079_21	phrog_144	66.9	3.5e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526079_21	UniRef90_UPI001E2C218C	101.0	5.68e-26	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1526079_21	198094.BA_0461	93.6	1.7e-23	HNH endonuclease	N/A
Pfam	UHGV-1526079_21	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1526079_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1526079_23	phrog_36	63.7	3.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1526079_23	UniRef90_UPI001BA7148F	59.7	0.0000000145	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-1526079_23	1232447.BAHW02000005_gene152	54.7	0.000000219	N/A	N/A
structural_annotation	UHGV-1526079_23	PF07374,MF_00674,NF001074	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_27	phrog_799	100.2	2.2e-29	DNA methyltransferase	other
UniRef90	UHGV-1526079_27	UniRef90_UPI001624FD69	270.0	0	sugar-phosphate nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-1526079_27	1458856.A0A059T5F9_9CAUD	253.0	0	methyltransferase activity	N/A
structural_annotation	UHGV-1526079_27	PF05869,MF_01872,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_28	phrog_803	55.0	0.0000000000000016	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1526079_28	UniRef90_B0YL92	53.1	0.0000000555	Orf42	N/A
eggNOG-mapper	UHGV-1526079_28	1449342.JQMR01000001_gene1023	61.2	0.00000000000646	N/A	N/A
KOfam	UHGV-1526079_29	K04763	68.1	1.5e-19	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1526079_29	phrog_216	101.2	8.7e-30	integrase	integration and excision
UniRef90	UHGV-1526079_29	UniRef90_A0A1Y4N8K8	308.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1526079_29	1232446.BAIE02000002_gene805	304.0	0	Integrase	N/A
Pfam	UHGV-1526079_29	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1526079_29	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1526079_29	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1526079_31	K06412	104.1	1.1e-30	spoVG; stage V sporulation protein G	N/A
UniRef90	UHGV-1526079_31	UniRef90_R6D6X2	84.0	1.7e-19	SpoVG family protein	N/A
eggNOG-mapper	UHGV-1526079_31	1128398.Curi_c23870	81.6	2.53e-19	Could be involved in septation	N/A
Pfam	UHGV-1526079_31	PF04026	N/A	N/A	SpoVG	SpoVG
COG	UHGV-1526079_31	COG2088	N/A	N/A	DNA-binding protein SpoVG, cell septation regulator	N/A
structural_annotation	UHGV-1526079_31	PF04026,MF_00819,NF009749,COG2088	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_34	phrog_5968	153.4	1.4013e-45	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1526079_34	UniRef90_A0A1H7IID4	209.0	0	Phage replisome organizer, putative, N-terminal region	N/A
eggNOG-mapper	UHGV-1526079_34	536233.CLO_0864	168.0	0	Phage replisome organizer	N/A
Pfam	UHGV-1526079_34	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1526079_34	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1526079_34	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1526079_34	PF09681,TIGR01714,COG3756	N/A	N/A	N/A	N/A
UniRef90	UHGV-1526079_38	UniRef90_R6H197	61.6	0.0000000000343	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1526079_38	411461.DORFOR_00030	61.2	0.00000000000858	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1526079_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1526079_38	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1526079_39	K22300	50.3	0.000000000000049	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1526079_39	phrog_8	55.7	0.0000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1526079_39	UniRef90_A0A1B1YAB2	59.3	0.00000000446	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1526079_39	1235792.C808_02455	63.5	0.000000000137	Peptidase S24-like	N/A
Pfam	UHGV-1526079_39	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1526079_39	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-1526079_39	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1526079_41	K14059	200.3	0	int; integrase	N/A
PHROG	UHGV-1526079_41	phrog_1	188.0	0	integrase	integration and excision
UniRef90	UHGV-1526079_41	UniRef90_R5Z297	264.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-1526079_41	428127.EUBDOL_01497	148.0	2.35e-38	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1526079_41	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1526079_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1526079_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1526079_41	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1526079_42	phrog_9243	81.6	8.8e-24	N/A	unknown function
UniRef90	UHGV-1526079_42	UniRef90_A0A7X9BB93	209.0	0	N/A	N/A
eggNOG-mapper	UHGV-1526079_42	1118057.CAGX01000067_gene1128	61.6	0.00000000936	N/A	N/A
Pfam	UHGV-1526079_42	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-1526079_42	MF_00052_A,NF011119	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1526079	Yes	23,727	25	77	1