vOTU vOTU-087208

vOTU: vOTU-087208

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-087208
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-09551 → vOTU-087208
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0025620
Biosample ID	SAMEA4766131
Genome length (bp)	39,655 bps
CheckV completeness	86.76% (Medium-quality)
CDS count	58
CDS density	90.55%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1098	Host agreement	79.05
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	203	Host agreement	94.58

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 86.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0025620_1	phrog_3782	72.0	3.6e-21	N/A	unknown function
UniRef90	UHGV-0025620_1	UniRef90_A0A373XM74	154.0	0	N/A	N/A
eggNOG-mapper	UHGV-0025620_1	411902.CLOBOL_04119	108.0	1.02e-29	N/A	N/A
Pfam	UHGV-0025620_1	PF14192	N/A	N/A	N/A	DUF4314
COG	UHGV-0025620_1	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
structural_annotation	UHGV-0025620_1	PF14192,MF_00754,NF003019	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025620_4	UniRef90_UPI00084D17C5	102.0	1.17e-26	N/A	N/A
structural_annotation	UHGV-0025620_4	PF14213	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025620_5	515620.EUBELI_20304	219.0	0	N/A	N/A
structural_annotation	UHGV-0025620_5	MF_00637,TIGR01925,COG2172	N/A	N/A	N/A	N/A
KOfam	UHGV-0025620_6	K01448	57.9	1.6e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0025620_6	phrog_435	83.9	2.5e-24	endolysin	lysis
UniRef90	UHGV-0025620_6	UniRef90_A0A373KFY8	333.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0025620_6	1384066.JAGT01000001_gene130	72.8	0.00000000000569	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0025620_6	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0025620_6	PF09374	N/A	N/A	Predicted Peptidoglycan domain	PG_binding_3
Pfam	UHGV-0025620_6	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0025620_6	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-0025620_7	phrog_881	88.2	4.9e-26	holin	lysis
UniRef90	UHGV-0025620_7	UniRef90_A0A4Q7P349	103.0	1.07e-27	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0025620_7	742740.HMPREF9474_02251	105.0	4.79e-29	Putative phage holin Dp-1	N/A
Pfam	UHGV-0025620_7	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0025620_7	PF16938	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025620_8	UniRef90_A0A374MYZ3	177.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0025620_8	1007096.BAGW01000032_gene1580	87.4	2.12e-21	N/A	N/A
UniRef90	UHGV-0025620_10	UniRef90_A0A1C6HHE5	238.0	0	BppU_N domain-containing protein	N/A
structural_annotation	UHGV-0025620_10	PF08931	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025620_11	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_12	phrog_1194	62.9	5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0025620_12	397290.C810_05238	94.4	7.23e-23	N/A	N/A
Pfam	UHGV-0025620_12	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0025620_12	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_13	phrog_1535	481.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0025620_13	UniRef90_A0A2N0ULX3	2014.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0025620_13	33035.JPJF01000093_gene2243	347.0	0	phage tail tape measure protein	N/A
COG	UHGV-0025620_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0025620_13	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_16	phrog_706	141.4	4.99983e-42	N/A	unknown function
UniRef90	UHGV-0025620_16	UniRef90_A0A2N0ULW2	370.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0025620_16	1160721.RBI_II00530	213.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0025620_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0025620_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_17	phrog_11299	136.5	1.4e-40	N/A	unknown function
eggNOG-mapper	UHGV-0025620_17	1449050.JNLE01000003_gene3883	97.1	8.62e-24	N/A	N/A
structural_annotation	UHGV-0025620_17	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_18	phrog_3099	148.3	3.50325e-44	N/A	unknown function
eggNOG-mapper	UHGV-0025620_18	1160721.RBI_II00532	232.0	0	N/A	N/A
structural_annotation	UHGV-0025620_18	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_19	phrog_3266	105.3	4.1e-31	tail completion	connector
eggNOG-mapper	UHGV-0025620_19	1449050.JNLE01000003_gene3885	143.0	5.34035e-42	N/A	N/A
structural_annotation	UHGV-0025620_19	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_20	phrog_556	121.8	1.9e-36	minor head protein	head and packaging
UniRef90	UHGV-0025620_20	UniRef90_UPI00189BC4F9	182.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0025620_20	1449050.JNLE01000003_gene3886	177.0	0	N/A	N/A
Pfam	UHGV-0025620_20	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0025620_20	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_21	phrog_3366	73.3	2.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-0025620_21	1449050.JNLE01000003_gene3887	87.8	1.78e-20	N/A	N/A
Pfam	UHGV-0025620_21	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0025620_21	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_22	phrog_541	77.3	1.8e-22	head-tail adaptor	connector
UniRef90	UHGV-0025620_22	UniRef90_A0A371AQT0	107.0	7.84e-28	N/A	N/A
eggNOG-mapper	UHGV-0025620_22	1449050.JNLE01000003_gene3888	80.1	9.64e-18	N/A	N/A
PHROG	UHGV-0025620_23	phrog_422	231.0	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0025620_23	693746.OBV_18090	390.0	0	N/A	N/A
structural_annotation	UHGV-0025620_23	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_24	phrog_194	99.8	3.4e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0025620_24	UniRef90_A0A2N0ULW9	338.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0025620_24	742765.HMPREF9457_02126	175.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0025620_24	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0025620_24	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_25	phrog_2616	40.5	0.000000000057	N/A	unknown function
structural_annotation	UHGV-0025620_25	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_26	phrog_478	128.8	2.1e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0025620_26	UniRef90_A0A285PT53	144.0	5.97934e-42	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0025620_26	478749.BRYFOR_08526	148.0	3.22299e-44	N/A	N/A
PHROG	UHGV-0025620_28	phrog_581	317.0	0	minor head protein	head and packaging
UniRef90	UHGV-0025620_28	UniRef90_A0A2N0ULU5	730.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-0025620_28	658655.HMPREF0988_02563	366.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0025620_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0025620_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025620_28	PF06152,PF15887,TIGR01641,COG4307	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_29	phrog_533	322.1	0	portal protein	head and packaging
UniRef90	UHGV-0025620_29	UniRef90_A0A2N0ULU9	821.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0025620_29	1304866.K413DRAFT_3035	474.0	0	N/A	N/A
structural_annotation	UHGV-0025620_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0025620_30	K06909	398.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0025620_30	phrog_3717	146.5	5.60519e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0025620_30	UniRef90_A0A2N0ULW5	1024.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0025620_30	411461.DORFOR_01162	613.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0025620_30	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0025620_30	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0025620_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0025620_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0025620_30	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025620_31	TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025620_33	UniRef90_UPI000E4DC4DA	149.0	1.13505e-43	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0025620_33	PF15597	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025620_36	PF19824,MF_01506	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_37	phrog_1829	137.9	5.99994e-41	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025620_37	UniRef90_A0A842CXK4	118.0	1.81e-30	DNA primase (Fragment)	N/A
eggNOG-mapper	UHGV-0025620_37	1410670.JHXF01000015_gene2274	196.0	0	Phage plasmid primase, P4 family	N/A
COG	UHGV-0025620_37	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
eggNOG-mapper	UHGV-0025620_38	1410670.JHXF01000015_gene2272	51.6	0.000000818	N/A	N/A
COG	UHGV-0025620_40	COG1199	N/A	N/A	Rad3-related DNA helicase DinG	N/A
structural_annotation	UHGV-0025620_42	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_43	phrog_140	91.8	8.3e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025620_43	UniRef90_A0A2N0UXU6	267.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0025620_43	411462.DORLON_00806	210.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0025620_43	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0025620_43	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0025620_43	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_44	phrog_16687	68.2	7.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0025620_44	1123511.KB905868_gene197	47.8	0.00000607	N/A	N/A
KOfam	UHGV-0025620_45	K07505	407.9	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0025620_45	phrog_2597	1171.9	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025620_45	UniRef90_A0A2N0UXP7	1443.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-0025620_45	394503.Ccel_3304	964.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0025620_45	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0025620_45	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0025620_45	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0025620_45	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0025620_46	K17677	357.9	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0025620_46	phrog_16	293.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025620_46	UniRef90_A0A412ULZ3	1051.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0025620_46	1235798.C817_03499	838.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0025620_46	mREase_IV_00005	134.9	7.1e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0025620_46	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0025620_46	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0025620_46	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0025620_46	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_47	phrog_2698	174.5	0	N/A	unknown function
UniRef90	UHGV-0025620_47	UniRef90_UPI000F54335B	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-0025620_47	742723.HMPREF9477_00927	140.0	5.26e-40	N/A	N/A
structural_annotation	UHGV-0025620_47	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_48	phrog_124	265.0	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025620_48	UniRef90_A0A2N0UXR5	680.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-0025620_48	411462.DORLON_00811	430.0	0	AAA domain	N/A
Pfam	UHGV-0025620_48	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0025620_48	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0025620_50	K03546	59.4	3.5e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0025620_50	phrog_1499	482.5	0	N/A	unknown function
UniRef90	UHGV-0025620_50	UniRef90_A0A2N0UXU2	748.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0025620_50	645991.Sgly_0320	503.0	0	domain protein	N/A
Pfam	UHGV-0025620_50	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0025620_50	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0025620_50	TIGR03185,COG5293	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025620_51	1235793.C809_00533	53.5	0.0000000822	N/A	N/A
PHROG	UHGV-0025620_53	phrog_6058	41.8	0.000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0025620_53	742738.HMPREF9460_00848	47.8	0.00000782	N/A	N/A
structural_annotation	UHGV-0025620_53	NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0025620_54	phrog_599	42.2	0.000000000016	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0025620_54	UniRef90_UPI0015F48AC0	136.0	2.13e-40	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0025620_54	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0025620_54	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0025620_54	PF14354,TIGR03655	N/A	N/A	N/A	N/A
KOfam	UHGV-0025620_56	K18830	55.9	0.0000000000000011	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0025620_56	phrog_2328	51.0	0.000000000000019	transcriptional repressor	transcription regulation
UniRef90	UHGV-0025620_56	UniRef90_A0A355TWJ4	112.0	1.64e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0025620_56	525254.HMPREF0072_0267	92.0	1.92e-22	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-0025620_56	retron_type_VI_hth_cluster2_1	41.5	0.000000000029	N/A	Retron
Pfam	UHGV-0025620_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025620_56	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0025620_56	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025620_57	UniRef90_A0A374DTF3	128.0	6.24e-35	N/A	N/A
KOfam	UHGV-0025620_58	K14059	107.2	2.4e-31	int; integrase	N/A
PHROG	UHGV-0025620_58	phrog_1	132.0	5.6e-39	integrase	integration and excision
UniRef90	UHGV-0025620_58	UniRef90_A0A374MXE7	785.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0025620_58	693746.OBV_41260	194.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0025620_58	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0025620_58	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0025620_58	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0025620	Yes	39,655	41	87	1