vOTU vOTU-087270

vOTU: vOTU-087270

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-087270
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00060 → vGENUS-01418 → vOTU-087270
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0133085
Biosample ID	SAMN04329780
Genome length (bp)	32,015 bps
CheckV completeness	76.44% (Medium-quality)
CDS count	50
CDS density	93.48%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	80	Host agreement	87.5
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.44)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0133085_1	phrog_156	192.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0133085_1	1410650.JHWL01000003_gene2833	376.0	0	N/A	N/A
PHROG	UHGV-0133085_3	phrog_7121	106.4	1.8e-31	tail fiber protein	tail
UniRef90	UHGV-0133085_3	UniRef90_R5ILW4	746.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0133085_3	1226322.HMPREF1545_00783	86.7	0.00000000000000268	Chaperone of endosialidase	N/A
Pfam	UHGV-0133085_3	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0133085_3	PF10248	N/A	N/A	N/A	N/A
PHROG	UHGV-0133085_4	phrog_511	233.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0133085_4	1519439.JPJG01000060_gene1903	298.0	0	N/A	N/A
structural_annotation	UHGV-0133085_4	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
KOfam	UHGV-0133085_5	K06909	152.3	4.2039e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0133085_5	phrog_979	140.4	7.00649e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0133085_5	UniRef90_A0A810Q5R0	649.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0133085_5	1410650.JHWL01000003_gene2834	617.0	0	N/A	N/A
Pfam	UHGV-0133085_5	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0133085_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0133085_5	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0133085_6	phrog_606	65.5	9.1e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0133085_6	UniRef90_UPI001F487344	126.0	1.38e-34	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0133085_6	397290.C810_05185	125.0	2.27e-34	DNA-packaging protein gp3	N/A
Pfam	UHGV-0133085_6	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0133085_6	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0133085_8	phrog_3584	119.0	3.4e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0133085_8	537013.CLOSTMETH_02141	68.2	0.000000000033	N/A	N/A
structural_annotation	UHGV-0133085_8	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0133085_9	phrog_2245	86.9	2.2e-25	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0133085_9	UniRef90_A0A4U9RLZ8	70.5	0.000000000000121	N/A	N/A
eggNOG-mapper	UHGV-0133085_9	706433.HMPREF9430_01279	65.9	0.0000000000016	N/A	N/A
PHROG	UHGV-0133085_13	phrog_190	105.8	4e-31	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0133085_13	UniRef90_UPI0006C2AC63	131.0	2.83e-36	N/A	N/A
eggNOG-mapper	UHGV-0133085_13	693746.OBV_25250	115.0	8e-31	N/A	N/A
Pfam	UHGV-0133085_13	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0133085_13	PF06356	N/A	N/A	N/A	N/A
Pfam	UHGV-0133085_17	PF14359	N/A	N/A	N/A	DUF4406
UniRef90	UHGV-0133085_18	UniRef90_UPI001C10265C	100.0	6.27e-25	N/A	N/A
Pfam	UHGV-0133085_18	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0133085_18	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-0133085_19	K00558	48.9	0.000000000000052	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0133085_19	phrog_757	133.8	8.4e-40	DNA methyltransferase	other
UniRef90	UHGV-0133085_19	UniRef90_A0A1C5WFL3	405.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0133085_19	622312.ROSEINA2194_01264	382.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0133085_19	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0133085_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0133085_19	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0133085_22	PF05082	N/A	N/A	N/A	N/A
KOfam	UHGV-0133085_28	K22300	56.2	8.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0133085_28	phrog_8	49.1	0.00000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0133085_28	UniRef90_A0A844DFR0	116.0	2.96e-31	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0133085_28	748224.HMPREF9436_01444	115.0	3.9e-31	N/A	N/A
Pfam	UHGV-0133085_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0133085_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0133085_28	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0133085_29	246194.CHY_1698	58.2	0.000000325	Staphylococcal nuclease homologue	N/A
Pfam	UHGV-0133085_29	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-0133085_29	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
KOfam	UHGV-0133085_31	K22299	46.8	0.00000000000061	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
Pfam	UHGV-0133085_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0133085_31	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0133085_31	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0133085_32	K06400	253.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0133085_32	phrog_95	266.8	0	integrase	integration and excision
UniRef90	UHGV-0133085_32	UniRef90_A0A3A9FR25	407.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0133085_32	1408437.JNJN01000002_gene1420	400.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0133085_32	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0133085_32	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0133085_32	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0133085_32	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0133085_32	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0133085_33	UniRef90_A0A8F0WD75	72.8	0.000000000000624	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0133085_33	1408437.JNJN01000043_gene801	69.7	0.00000000000164	N/A	N/A
eggNOG-mapper	UHGV-0133085_38	1280664.AUIX01000040_gene2326	65.5	0.0000000000866	Plasmid pRiA4b ORF-3-like protein	N/A
Pfam	UHGV-0133085_38	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
eggNOG-mapper	UHGV-0133085_39	1160721.RBI_I00206	52.8	0.0000000204	N/A	N/A
structural_annotation	UHGV-0133085_39	PF10723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0133085_41	UniRef90_UPI00164EA432	223.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0133085_41	525254.HMPREF0072_1273	218.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0133085_41	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0133085_41	NF033743	N/A	N/A	N/A	N/A
PHROG	UHGV-0133085_42	phrog_13256	62.3	4.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0133085_42	1226322.HMPREF1545_00166	67.0	0.000000000000113	N/A	N/A
PHROG	UHGV-0133085_44	phrog_937	49.3	0.000000000000094	hemolysin	other
eggNOG-mapper	UHGV-0133085_46	1519439.JPJG01000060_gene1895	83.2	7.92e-18	N/A	N/A
structural_annotation	UHGV-0133085_46	PF10618	N/A	N/A	N/A	N/A
UniRef90	UHGV-0133085_47	UniRef90_UPI00051B4A1C	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-0133085_47	1519439.JPJG01000060_gene1894	193.0	0	N/A	N/A
Pfam	UHGV-0133085_47	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0133085_47	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0133085_47	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0133085_48	K19721	128.8	1.6e-38	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0133085_48	phrog_819	151.3	0	tail protein	tail
eggNOG-mapper	UHGV-0133085_48	1232443.BAIA02000078_gene14	84.3	0.0000000000000351	nuclear chromosome segregation	N/A
Pfam	UHGV-0133085_48	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0133085_48	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0133085_49	PF18962,NF011773	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0133085_50	1408437.JNJN01000039_gene389	486.0	0	heme binding	N/A
Pfam	UHGV-0133085_50	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-0133085_50	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0133085	Yes	32,015	58	76	1