vOTU vOTU-087319

vOTU: vOTU-087319

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-087319
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-18938 → vOTU-087319
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0079947
Biosample ID	SAMEA2784486
Genome length (bp)	29,090 bps
CheckV completeness	68.86% (Medium-quality)
CDS count	52
CDS density	90.47%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	339	Host agreement	97.64
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 68.86)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0079947_1	phrog_27197	86.2	8.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0079947_1	394503.Ccel_3068	61.2	0.00000000156	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0079947_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0079947_1	NF007410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079947_3	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079947_5	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079947_7	PF14120	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_8	phrog_674	140.7	1.19993e-41	N/A	unknown function
UniRef90	UHGV-0079947_8	UniRef90_A0A3A6E846	480.0	0	N/A	N/A
eggNOG-mapper	UHGV-0079947_8	556268.OFAG_00840	87.4	3.94e-17	N/A	N/A
Pfam	UHGV-0079947_8	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0079947_8	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_9	phrog_2760	188.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079947_9	UniRef90_A0A3A6EAW6	503.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0079947_9	1235794.C811_01355	154.0	2.95954e-42	RecT family	N/A
Pfam	UHGV-0079947_9	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0079947_9	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0079947_9	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0079947_9	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0079947_10	UniRef90_UPI001CBB85F6	111.0	9.44e-28	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0079947_10	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0079947_11	K02086	63.2	4.2e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0079947_11	phrog_186	72.5	7.5e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079947_11	UniRef90_A0A6N7TLH4	422.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0079947_11	877411.JMMA01000002_gene2052	63.2	0.00000000795	N/A	N/A
Pfam	UHGV-0079947_11	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0079947_11	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0079947_11	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0079947_11	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079947_12	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_15	phrog_3136	121.1	4e-36	N/A	unknown function
UniRef90	UHGV-0079947_15	UniRef90_UPI001CBCD733	129.0	6.56e-35	ASCH domain-containing protein	N/A
COG	UHGV-0079947_15	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0079947_15	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079947_16	TIGR04165	N/A	N/A	N/A	N/A
KOfam	UHGV-0079947_17	K01160	57.0	6.2e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0079947_17	phrog_34	58.4	1.6e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0079947_17	UniRef90_A0A6N7TND6	219.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0079947_17	875454.BAEW01000002_gene491	135.0	1.18e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0079947_17	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0079947_17	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0079947_17	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_19	phrog_36	69.8	5.1e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0079947_19	UniRef90_A0A6N7TNN9	279.0	0	N/A	N/A
eggNOG-mapper	UHGV-0079947_19	748224.HMPREF9436_01463	82.4	5.11e-18	N/A	N/A
Pfam	UHGV-0079947_19	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0079947_19	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0079947_20	UniRef90_UPI0018CC2891	119.0	1.28e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0079947_20	1235790.C805_00037	111.0	5.2e-29	N/A	N/A
structural_annotation	UHGV-0079947_20	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0079947_21	K06909	143.6	1.90016e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0079947_21	phrog_10250	174.2	0	N/A	unknown function
UniRef90	UHGV-0079947_21	UniRef90_A0A844D8I4	849.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0079947_21	411490.ANACAC_00783	492.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0079947_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0079947_21	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0079947_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0079947_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0079947_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_22	phrog_64	122.7	1.6e-36	portal protein	head and packaging
UniRef90	UHGV-0079947_22	UniRef90_A0A6N7TNT3	881.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0079947_22	1042156.CXIVA_01850	80.9	0.000000000000185	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0079947_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0079947_22	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_23	phrog_2468	79.8	2.4e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0079947_23	UniRef90_A0A6N7TLR7	638.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0079947_23	1504822.CCNO01000013_gene286	114.0	2.71e-25	cell adhesion	N/A
Pfam	UHGV-0079947_23	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0079947_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079947_23	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0079947_24	K07727	50.7	0.000000000000049	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0079947_24	UniRef90_A0A2V2FGW5	108.0	1.31e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0079947_24	1378168.N510_01451	89.4	7.93e-23	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0079947_24	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0079947_24	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079947_26	PF07342	N/A	N/A	N/A	N/A
KOfam	UHGV-0079947_28	K07741	69.4	1.2e-19	antB; anti-repressor protein	N/A
PHROG	UHGV-0079947_28	phrog_130	228.6	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0079947_28	UniRef90_A0A396LJD2	340.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0079947_28	663952.SDD27957_09050	253.0	0	COG3617 Prophage antirepressor	N/A
Pfam	UHGV-0079947_28	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0079947_28	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0079947_28	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0079947_28	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_29	phrog_5	42.6	0.000000000014	tail completion or Neck1 protein	connector
UniRef90	UHGV-0079947_29	UniRef90_A0A6N7TNP6	282.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0079947_29	1123309.AQYB01000018_gene814	85.1	4.54e-19	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0079947_29	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0079947_29	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079947_31	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_32	phrog_247	206.1	0	major head protein	head and packaging
UniRef90	UHGV-0079947_32	UniRef90_UPI001BA5448B	237.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0079947_32	33035.JPJF01000106_gene3132	357.0	0	N/A	N/A
Pfam	UHGV-0079947_32	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-0079947_32	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_34	phrog_17977	41.6	0.000000000018	N/A	unknown function
UniRef90	UHGV-0079947_34	UniRef90_A0A844DHJ8	117.0	1.33e-31	Phage head closure protein	N/A
structural_annotation	UHGV-0079947_34	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0079947_35	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_36	phrog_885	61.8	9.6e-18	major tail protein	tail
eggNOG-mapper	UHGV-0079947_36	1111121.HMPREF1247_0789	116.0	6.4e-30	N/A	N/A
structural_annotation	UHGV-0079947_36	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_39	phrog_28775	115.1	3.1e-34	tail length tape measure protein	tail
UniRef90	UHGV-0079947_39	UniRef90_A0A6N7TLD3	1296.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0079947_39	1492737.FEM08_12070	134.0	4.95e-30	tape measure	N/A
Pfam	UHGV-0079947_39	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0079947_39	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0079947_39	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0079947_39	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
KOfam	UHGV-0079947_43	K14059	140.4	2.29995e-41	int; integrase	N/A
PHROG	UHGV-0079947_43	phrog_1	162.5	0	integrase	integration and excision
UniRef90	UHGV-0079947_43	UniRef90_A0A6N7TNQ4	745.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0079947_43	411471.SUBVAR_05137	260.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0079947_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0079947_43	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0079947_43	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0079947_44	K15773	41.1	0.000000000037	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
UniRef90	UHGV-0079947_44	UniRef90_A0A6N7TLT0	366.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0079947_44	266265.Bxe_A3948	50.1	0.00000687	Helix-turn-helix domain	N/A
Pfam	UHGV-0079947_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0079947_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0079947_44	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_47	phrog_888	66.5	1.4e-35	N/A	unknown function
UniRef90	UHGV-0079947_47	UniRef90_A0A6N7TMA2	452.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0079947_47	1415774.U728_165	86.7	1.58e-17	Short C-terminal domain	N/A
Pfam	UHGV-0079947_47	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-0079947_47	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0079947_47	PF15947,PF14471	N/A	N/A	N/A	N/A
KOfam	UHGV-0079947_50	K22300	49.4	0.0000000000001	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0079947_50	phrog_2967	45.5	0.0000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0079947_50	UniRef90_A0A844DFR0	168.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0079947_50	748224.HMPREF9436_01444	139.0	1.54e-40	N/A	N/A
Pfam	UHGV-0079947_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0079947_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0079947_50	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0079947_52	phrog_4433	121.6	8.3e-36	N/A	unknown function
UniRef90	UHGV-0079947_52	UniRef90_A0A6M5C839	97.8	5.18e-23	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0079947_52	33035.JPJF01000122_gene2458	99.8	2.41e-23	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0079947_52	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0079947_52	PF12120,NF000066	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0079947	Yes	29,090	55	69	1