vOTU vOTU-087838

vOTU: vOTU-087838

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-087838
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00035 → vOTU-087838
Host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium thermobutyricum
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0011520
Biosample ID	SAMEA4765934
Genome length (bp)	27,186 bps
CheckV completeness	77.80% (Medium-quality)
CDS count	34
CDS density	87.85%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Clostridiales → Clostridiaceae → Clostridium → Clostridium thermobutyricum	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 77.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0011520_1	K07729	46.4	0.00000000000085	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0011520_1	UniRef90_A0A0H2YTT1	92.8	1.23e-23	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0011520_1	195103.CPF_1603	92.8	2.07e-24	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0011520_1	retron_type_VI_hth_cluster2_1	42.0	0.000000000028	N/A	Retron
Pfam	UHGV-0011520_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0011520_1	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_2	phrog_6499	153.9	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0011520_2	UniRef90_A0A0H2YTZ6	255.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0011520_2	1391647.AVSV01000039_gene1079	274.0	0	sequence-specific DNA binding	N/A
COG	UHGV-0011520_2	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0011520_2	PF06892,NF040522,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_5	phrog_428	147.9	7.9874e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011520_5	UniRef90_A0A174QR13	337.0	0	Phage-related regulatory protein	N/A
eggNOG-mapper	UHGV-0011520_5	1391647.AVSV01000039_gene1083	312.0	0	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0011520_5	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0011520_5	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0011520_5	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-0011520_5	PF09524,PF02002,TIGR02220,TIGR02719,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0011520_6	K02314	428.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0011520_6	phrog_19	323.9	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011520_6	UniRef90_UPI0004012683	654.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0011520_6	1391647.AVSV01000039_gene1084	654.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0011520_6	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0011520_6	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
NCBIFam	UHGV-0011520_6	TIGR00665.1	N/A	N/A	replicative DNA helicase	N/A
COG	UHGV-0011520_6	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0011520_6	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_9	phrog_36	46.6	0.00000000000039	transcriptional regulator	transcription regulation
UniRef90	UHGV-0011520_9	UniRef90_A0A174F044	110.0	1.95e-27	N/A	N/A
eggNOG-mapper	UHGV-0011520_9	545697.HMPREF0216_02836	115.0	5.49e-30	N/A	N/A
structural_annotation	UHGV-0011520_9	PF08281,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0011520_10	K04763	213.4	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0011520_10	phrog_1	143.0	2.40042e-42	integrase	integration and excision
UniRef90	UHGV-0011520_10	UniRef90_A0A1V4SWW0	466.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0011520_10	1443122.Z958_p0023	179.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0011520_10	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0011520_10	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0011520_10	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0011520_10	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_12	phrog_144	89.9	2.7e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0011520_12	UniRef90_UPI001A2AF415	160.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0011520_12	1567013.A0A0A7RTK8_9CAUD	114.0	7.99e-31	HNH endonuclease	N/A
Pfam	UHGV-0011520_12	PF01844	N/A	N/A	HNH endonuclease	HNH
structural_annotation	UHGV-0011520_12	PF09889,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_13	phrog_83	116.6	2e-34	terminase small subunit	head and packaging
UniRef90	UHGV-0011520_13	UniRef90_UPI001A26BCBB	238.0	0	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0011520_13	536232.CLM_2936	197.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0011520_13	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0011520_13	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0011520_13	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0011520_13	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_14	phrog_9	388.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0011520_14	UniRef90_UPI001CCE7B76	1044.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0011520_14	536232.CLM_1656	807.0	0	Terminase	N/A
Pfam	UHGV-0011520_14	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0011520_14	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0011520_14	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0011520_14	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_15	phrog_12	262.8	0	portal protein	head and packaging
UniRef90	UHGV-0011520_15	UniRef90_UPI001ABB1AB2	629.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0011520_15	536232.CLM_1657	590.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0011520_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0011520_15	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0011520_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0011520_15	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0011520_16	K01358	134.9	8e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0011520_16	phrog_94	234.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0011520_16	UniRef90_UPI001ABB38AC	358.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0011520_16	1382358.JHVN01000024_gene1706	272.0	0	Serine dehydrogenase proteinase	N/A
Pfam	UHGV-0011520_16	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0011520_16	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0011520_16	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_17	phrog_10	148.0	7.42688e-44	major head protein	head and packaging
UniRef90	UHGV-0011520_17	UniRef90_UPI000C76C68B	506.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0011520_17	536233.CLO_1424	456.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0011520_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0011520_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0011520_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0011520_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_18	phrog_40	41.7	0.000000000017	head-tail adaptor Ad1	connector
UniRef90	UHGV-0011520_18	UniRef90_A0A336QZJ0	101.0	3.23e-26	Putative DNA packaging protein	N/A
eggNOG-mapper	UHGV-0011520_18	536232.CLM_1660	89.0	3.5e-22	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0011520_18	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0011520_18	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0011520_18	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_19	phrog_25	58.1	1.7e-16	head closure Hc1	connector
UniRef90	UHGV-0011520_19	UniRef90_Q8SBP6	143.0	1.99965e-42	Gp8 protein	N/A
eggNOG-mapper	UHGV-0011520_19	195103.CPF_1582	127.0	8.86e-37	Phage head-tail adaptor	N/A
Pfam	UHGV-0011520_19	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0011520_19	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0011520_19	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_20	phrog_5	43.1	0.00000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-0011520_20	UniRef90_A0A0H2YV51	221.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0011520_20	195103.CPF_1581	221.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0011520_20	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0011520_20	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_21	phrog_78	78.9	6.5e-23	tail terminator	connector
UniRef90	UHGV-0011520_21	UniRef90_Q8SBP4	159.0	0	Gp10 protein	N/A
eggNOG-mapper	UHGV-0011520_21	195103.CPF_1580	129.0	1.91e-37	N/A	N/A
structural_annotation	UHGV-0011520_21	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_22	phrog_88	118.6	4.9e-35	major tail protein	tail
UniRef90	UHGV-0011520_22	UniRef90_I2E8V9	205.0	0	Gp11	N/A
eggNOG-mapper	UHGV-0011520_22	536233.CLO_1429	117.0	2.63e-30	phage major tail protein, phi13 family	N/A
Pfam	UHGV-0011520_22	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0011520_22	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0011520_22	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0011520_22	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_23	phrog_13494	118.5	2.4e-35	N/A	unknown function
UniRef90	UHGV-0011520_23	UniRef90_I2E8W0	134.0	1.16e-38	Gp12	N/A
eggNOG-mapper	UHGV-0011520_23	195103.CPF_1578	134.0	1.95e-39	N/A	N/A
structural_annotation	UHGV-0011520_23	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_24	phrog_25901	51.4	0.000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0011520_24	195103.CPF_1577	120.0	4.03e-33	N/A	N/A
PHROG	UHGV-0011520_25	phrog_1533	352.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0011520_25	UniRef90_UPI0018ABC1F9	709.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0011520_25	1122146.AUHP01000010_gene1066	376.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0011520_25	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0011520_25	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0011520_25	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0011520_25	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_26	phrog_33	86.1	7.2e-25	distal tail protein Dit	tail
UniRef90	UHGV-0011520_26	UniRef90_A0A0H2YPX6	280.0	0	Putative phage tail component	N/A
eggNOG-mapper	UHGV-0011520_26	195103.CPF_1575	280.0	0	tail component	N/A
Pfam	UHGV-0011520_26	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0011520_26	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0011520_26	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0011520_26	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_27	phrog_1067	349.3	0	minor head protein	head and packaging
UniRef90	UHGV-0011520_27	UniRef90_A0A0H2YUZ1	644.0	0	Putative phage structural protein	N/A
eggNOG-mapper	UHGV-0011520_27	1187894.I2E8W3_9CAUD	646.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0011520_27	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0011520_27	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0011520_27	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0011520_28	phrog_21231	137.4	5.99994e-41	virion structural protein	head and packaging
UniRef90	UHGV-0011520_28	UniRef90_UPI0018A9CC08	475.0	0	pyocin knob domain-containing protein	N/A
eggNOG-mapper	UHGV-0011520_28	195103.CPF_1573	91.3	1.49e-16	competence protein COMEC	N/A
Pfam	UHGV-0011520_28	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0011520_28	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
UniRef90	UHGV-0011520_30	UniRef90_UPI000A5D07A5	67.4	0.000000000000273	XkdX family protein	N/A
eggNOG-mapper	UHGV-0011520_30	999411.HMPREF1092_03304	128.0	5.13e-38	N/A	N/A
PHROG	UHGV-0011520_31	phrog_1863	68.1	7.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0011520_31	999411.HMPREF1092_03303	153.0	0	N/A	N/A
PHROG	UHGV-0011520_32	phrog_9492	146.8	6.44597e-44	N/A	unknown function
UniRef90	UHGV-0011520_32	UniRef90_UPI0018AAAB03	242.0	0	cobalt ABC transporter permease	N/A
eggNOG-mapper	UHGV-0011520_32	999411.HMPREF1092_03302	262.0	0	N/A	N/A
KOfam	UHGV-0011520_33	K07273	207.8	0	acm; lysozyme	N/A
PHROG	UHGV-0011520_33	phrog_291	181.4	0	endolysin	lysis
UniRef90	UHGV-0011520_33	UniRef90_N9XS33	621.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0011520_33	999411.HMPREF1092_03301	621.0	0	family 25	N/A
Pfam	UHGV-0011520_33	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0011520_33	PF09374	N/A	N/A	Predicted Peptidoglycan domain	PG_binding_3
Pfam	UHGV-0011520_33	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0011520_33	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0011520_33	PF01183,PF01471,MF_01672,COG3757,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-0011520_34	K06149	52.9	0.000000000000008	uspA; universal stress protein A	N/A
UniRef90	UHGV-0011520_34	UniRef90_N9WEQ2	186.0	0	Usp domain-containing protein	N/A
eggNOG-mapper	UHGV-0011520_34	999411.HMPREF1092_02039	186.0	0	Belongs to the universal stress protein A family	N/A
Pfam	UHGV-0011520_34	PF00582	N/A	N/A	Universal stress protein family	Usp
COG	UHGV-0011520_34	COG0589	N/A	N/A	Nucleotide-binding universal stress protein, UspA family	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0011520	Yes	27,186	26	78	1