vOTU vOTU-088031

vOTU: vOTU-088031

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-088031
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-01866 → vGENUS-02430 → vOTU-088031
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0342127
Biosample ID	SAMD00011148
Genome length (bp)	17,072 bps
CheckV completeness	51.50% (Medium-quality)
CDS count	20
CDS density	98.11%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis	Total connections	96	Host agreement	94.79
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis	Total connections	30	Host agreement	86.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 51.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0342127_1	phrog_3584	240.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0342127_1	411902.CLOBOL_03891	387.0	0	N/A	N/A
structural_annotation	UHGV-0342127_1	PF21578	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0342127_2	411468.CLOSCI_00554	121.0	3.46e-34	N/A	N/A
PHROG	UHGV-0342127_3	phrog_119	64.3	1.9e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0342127_3	UniRef90_A0A374JQS6	139.0	2.1e-40	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0342127_3	411468.CLOSCI_00553	137.0	1.01e-40	HNH endonuclease	N/A
COG	UHGV-0342127_3	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0342127_4	phrog_1066	70.4	2.2e-20	N/A	unknown function
UniRef90	UHGV-0342127_4	UniRef90_B0NAT3	155.0	0	Putative phage terminase, small subunit, P27 family	N/A
eggNOG-mapper	UHGV-0342127_4	411902.CLOBOL_03883	157.0	0	N/A	N/A
Pfam	UHGV-0342127_4	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0342127_4	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0342127_5	phrog_9	334.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0342127_5	UniRef90_A0A374JP15	779.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0342127_5	411468.CLOSCI_00551	765.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0342127_5	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0342127_5	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0342127_5	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0342127_5	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0342127_6	phrog_12	161.6	0	portal protein	head and packaging
UniRef90	UHGV-0342127_6	UniRef90_B0NAT1	545.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0342127_6	411468.CLOSCI_00550	545.0	0	Phage portal protein	N/A
Pfam	UHGV-0342127_6	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0342127_6	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0342127_6	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0342127_7	K01358	145.7	4.2039e-43	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0342127_7	phrog_94	223.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0342127_7	UniRef90_A0A0M6WYF6	436.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0342127_7	411468.CLOSCI_00549	320.0	0	COG COG0740 Protease subunit of ATP-dependent Clp proteases	N/A
Pfam	UHGV-0342127_7	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0342127_7	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0342127_7	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0342127_8	phrog_10	126.2	3.2e-37	major head protein	head and packaging
UniRef90	UHGV-0342127_8	UniRef90_A0A0M6WZM3	750.0	0	Bacterial surface proteins containing Ig-like domains	N/A
eggNOG-mapper	UHGV-0342127_8	411468.CLOSCI_00548	551.0	0	Phage capsid family	N/A
Pfam	UHGV-0342127_8	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0342127_8	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0342127_8	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0342127_9	phrog_5223	61.2	1.3e-17	neck protein	connector
UniRef90	UHGV-0342127_9	UniRef90_A0A174XIL0	112.0	1.54e-30	N/A	N/A
eggNOG-mapper	UHGV-0342127_9	411902.CLOBOL_03878	111.0	1.29e-30	N/A	N/A
PHROG	UHGV-0342127_10	phrog_1951	68.2	9e-20	head-tail adaptor	connector
UniRef90	UHGV-0342127_10	UniRef90_UPI00189EBA11	112.0	1.56e-30	phage head closure protein	N/A
eggNOG-mapper	UHGV-0342127_10	1123263.AUKY01000046_gene471	64.3	0.00000000000365	N/A	N/A
structural_annotation	UHGV-0342127_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0342127_11	phrog_5	41.6	0.000000000031	tail completion or Neck1 protein	connector
UniRef90	UHGV-0342127_11	UniRef90_UPI001C00E12E	107.0	1.79e-27	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0342127_11	411902.CLOBOL_03876	112.0	3.97e-30	COG NOG18351 non supervised orthologous group	N/A
Pfam	UHGV-0342127_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0342127_11	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0342127_12	411902.CLOBOL_03875	60.8	0.000000000215	N/A	N/A
structural_annotation	UHGV-0342127_12	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0342127_13	phrog_2175	66.7	4.1e-19	protein with Ig domain	other
eggNOG-mapper	UHGV-0342127_13	411468.CLOSCI_00543	213.0	0	N/A	N/A
structural_annotation	UHGV-0342127_13	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0342127_14	411468.CLOSCI_00542	98.2	5.93e-25	N/A	N/A
structural_annotation	UHGV-0342127_14	PF06222	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0342127_15	457421.CBFG_03716	103.0	6.29e-28	N/A	N/A
PHROG	UHGV-0342127_16	phrog_1272	452.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0342127_16	UniRef90_A0A0M6WZJ0	887.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0342127_16	946235.CAER01000065_gene2435	275.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0342127_16	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0342127_16	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0342127_16	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0342127_16	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0342127_17	phrog_33	89.7	5.5e-26	distal tail protein Dit	tail
UniRef90	UHGV-0342127_17	UniRef90_UPI00164BA811	189.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0342127_17	1160721.RBI_I01575	156.0	3.50325e-44	Phage tail protein	N/A
COG	UHGV-0342127_17	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0342127_17	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0342127_18	phrog_1067	398.7	0	minor head protein	head and packaging
UniRef90	UHGV-0342127_18	UniRef90_A0A0M6WYA7	1077.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0342127_18	1160721.RBI_I01574	389.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0342127_18	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0342127_18	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0342127_18	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0342127_18	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0342127_20	phrog_19280	129.4	2.8e-38	N/A	unknown function
UniRef90	UHGV-0342127_20	UniRef90_UPI0018A009CA	221.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0342127_20	1160721.RBI_I01572	82.8	1.85e-16	N/A	N/A
structural_annotation	UHGV-0342127_20	PF10651,TIGR02781,COG2372	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0342127	Yes	17,072	45	52	1