vOTU vOTU-088545

vOTU: vOTU-088545

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-088545
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-14397 → vOTU-088545
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2037616
Biosample ID	SAMEA2737743
Genome length (bp)	28,378 bps
CheckV completeness	80.66% (Medium-quality)
CDS count	47
CDS density	94.74%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	953	Host agreement	80.17
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	143	Host agreement	89.51

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 80.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2037616_1	K14059	193.1	0	int; integrase	N/A
PHROG	UHGV-2037616_1	phrog_1	169.4	0	integrase	integration and excision
UniRef90	UHGV-2037616_1	UniRef90_UPI00164B8B01	394.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-2037616_1	1095750.HMPREF9970_1688	237.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-2037616_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2037616_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2037616_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2037616_1	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_2	phrog_15667	106.2	6.16571e-44	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-2037616_2	658086.HMPREF0994_06731	92.0	4.09e-18	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-2037616_2	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-2037616_2	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-2037616_2	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
UniRef90	UHGV-2037616_3	UniRef90_A0A374DTF3	108.0	4.06e-27	N/A	N/A
PHROG	UHGV-2037616_4	phrog_1914	161.9	0	N/A	unknown function
UniRef90	UHGV-2037616_4	UniRef90_A0A373XNL4	225.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-2037616_4	1160721.RBI_I01604	153.0	1.26117e-44	N/A	N/A
Pfam	UHGV-2037616_4	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2037616_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2037616_4	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-2037616_5	K22300	56.4	6.6e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2037616_5	phrog_8	69.4	2.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-2037616_5	UniRef90_A0A136WE02	117.0	1.44e-30	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-2037616_5	279010.BL03621	94.0	1.37e-21	Peptidase S24-like	N/A
Pfam	UHGV-2037616_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-2037616_5	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2037616_5	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-2037616_6	UniRef90_A0A373XYJ8	128.0	3.11e-37	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2037616_6	887325.HMPREF0381_0113	75.5	3.9e-17	N/A	N/A
structural_annotation	UHGV-2037616_6	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2037616_7	PF13443,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2037616_8	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_14	phrog_8470	184.0	0	N/A	unknown function
UniRef90	UHGV-2037616_14	UniRef90_UPI001E511407	97.8	1.62e-21	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2037616_14	649747.HMPREF0083_05326	105.0	1.38e-23	PcfJ-like protein	N/A
Pfam	UHGV-2037616_14	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
PHROG	UHGV-2037616_15	phrog_15609	119.5	1.1e-35	N/A	unknown function
UniRef90	UHGV-2037616_15	UniRef90_A0A373SLQ6	103.0	1.4e-21	N/A	N/A
eggNOG-mapper	UHGV-2037616_15	1514668.JOOA01000001_gene225	65.9	0.00000000322	N/A	N/A
structural_annotation	UHGV-2037616_15	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_19	phrog_2245	92.2	5.1e-27	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-2037616_19	UniRef90_A0A846K3D1	59.3	0.0000000022	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-2037616_19	1519439.JPJG01000059_gene1914	60.1	0.000000000344	N/A	N/A
structural_annotation	UHGV-2037616_20	PF14282,COG5570	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_21	phrog_824	145.5	1.59748e-43	N/A	unknown function
UniRef90	UHGV-2037616_21	UniRef90_UPI00164A50A6	259.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-2037616_21	397288.C806_00096	145.0	2.46629e-43	VRR_NUC	N/A
Pfam	UHGV-2037616_21	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-2037616_21	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_23	phrog_3584	155.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2037616_23	1235800.C819_00515	86.7	1.78e-17	N/A	N/A
structural_annotation	UHGV-2037616_23	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2037616_25	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_26	phrog_119	66.7	3.5e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2037616_26	UniRef90_A0A412ULY9	187.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2037616_26	1123315.AUIP01000014_gene1945	92.8	4.23e-23	HNH endonuclease	N/A
Pfam	UHGV-2037616_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2037616_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2037616_27	phrog_5110	82.8	3.1e-24	terminase small subunit	head and packaging
UniRef90	UHGV-2037616_27	UniRef90_UPI00057D0A7C	113.0	1.2e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-2037616_27	86416.Clopa_0336	106.0	1.56e-28	N/A	N/A
Pfam	UHGV-2037616_27	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-2037616_27	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_28	phrog_9	286.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-2037616_28	UniRef90_A0A412UM03	984.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-2037616_28	86416.Clopa_0337	619.0	0	Phage Terminase	N/A
Pfam	UHGV-2037616_28	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2037616_28	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2037616_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2037616_28	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_29	phrog_12	100.1	1.7e-29	portal protein	head and packaging
UniRef90	UHGV-2037616_29	UniRef90_A0A412ULV9	568.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2037616_29	1415774.U728_1254	269.0	0	Phage portal protein	N/A
Pfam	UHGV-2037616_29	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-2037616_29	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2037616_29	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-2037616_30	K01358	146.9	1.90577e-43	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2037616_30	phrog_94	214.4	0	head maturation protease	head and packaging
UniRef90	UHGV-2037616_30	UniRef90_A0A412ULU1	393.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-2037616_30	86416.Clopa_0340	173.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2037616_30	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2037616_30	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2037616_30	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_31	phrog_10	110.2	2.2e-32	major head protein	head and packaging
UniRef90	UHGV-2037616_31	UniRef90_A0A412ULW9	571.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2037616_31	1211817.CCAT010000053_gene2132	328.0	0	Phage capsid family	N/A
Pfam	UHGV-2037616_31	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2037616_31	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2037616_31	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2037616_31	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_32	phrog_749	50.9	0.000000000000023	N/A	unknown function
UniRef90	UHGV-2037616_32	UniRef90_A0A1G5CMX8	104.0	3.52e-27	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-2037616_32	349161.Dred_2603	55.8	0.00000000907	N/A	N/A
PHROG	UHGV-2037616_33	phrog_19734	62.9	4.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-2037616_33	86416.Clopa_0343	52.0	0.000000578	N/A	N/A
structural_annotation	UHGV-2037616_33	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2037616_34	698758.AXY_02180	62.4	0.0000000000394	N/A	N/A
structural_annotation	UHGV-2037616_34	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_37	phrog_88	62.9	4.9e-18	major tail protein	tail
UniRef90	UHGV-2037616_37	UniRef90_A0A1G5CNS8	173.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-2037616_37	411470.RUMGNA_02319	61.6	0.00000000517	COG NOG11304 non supervised orthologous group	N/A
NCBIFam	UHGV-2037616_37	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-2037616_37	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2037616_38	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-2037616_40	K20282	43.6	0.0000000000007	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-2037616_40	phrog_5218	305.2	0	N/A	unknown function
UniRef90	UHGV-2037616_40	UniRef90_UPI000E474EFE	780.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2037616_40	999413.HMPREF1094_02001	281.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-2037616_40	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-2037616_40	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-2037616_40	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_41	phrog_33	61.6	2.1e-17	distal tail protein Dit	tail
UniRef90	UHGV-2037616_41	UniRef90_UPI000BB5198E	70.5	0.000000000067	phage tail family protein	N/A
eggNOG-mapper	UHGV-2037616_41	272623.L63101	63.2	0.00000000568	phage tail	N/A
COG	UHGV-2037616_41	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2037616_41	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_42	phrog_1067	111.9	6.1e-33	minor head protein	head and packaging
UniRef90	UHGV-2037616_42	UniRef90_A0A1G5CPD2	161.0	3.37012e-42	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-2037616_42	1567011.A0A0A7RUI9_9VIRU	74.3	0.0000000000151	N-acetylmuramoyl-L-alanine amidase activity	N/A
NCBIFam	UHGV-2037616_42	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-2037616_42	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-2037616_43	UniRef90_A0A1C6HHE5	109.0	2.33e-23	BppU_N domain-containing protein	N/A
structural_annotation	UHGV-2037616_43	PF10651,PF00541,NF040788	N/A	N/A	N/A	N/A
KOfam	UHGV-2037616_45	K01447	117.5	1.5e-34	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2037616_45	phrog_833	187.6	0	endolysin	lysis
UniRef90	UHGV-2037616_45	UniRef90_R6MSP5	621.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2037616_45	428125.CLOLEP_01782	187.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2037616_45	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-2037616_45	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-2037616_45	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-2037616_46	phrog_1863	79.2	3e-24	N/A	unknown function
UniRef90	UHGV-2037616_46	UniRef90_UPI001F223E8B	87.8	3.66e-21	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-2037616_46	1226322.HMPREF1545_04027	67.8	0.0000000000000489	N/A	N/A
PHROG	UHGV-2037616_47	phrog_443	49.1	0.00000000000016	holin	lysis
UniRef90	UHGV-2037616_47	UniRef90_R6MWB0	76.3	6.82e-17	Conserved domain protein	N/A
eggNOG-mapper	UHGV-2037616_47	610130.Closa_4157	55.5	0.00000000181	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-2037616_47	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-2037616_47	PF16945	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2037616	Yes	28,378	37	81	1