vOTU vOTU-089093

vOTU: vOTU-089093

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-089093
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00116 → vGENUS-00755 → vOTU-089093
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1542753
Biosample ID	SAMEA2737923
Genome length (bp)	29,000 bps
CheckV completeness	87.50% (Medium-quality)
CDS count	40
CDS density	93.66%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	Total connections	55	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	Total connections	532	Host agreement	99.44

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 87.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1542753_1	phrog_1529	93.8	2.5e-27	N/A	unknown function
UniRef90	UHGV-1542753_1	UniRef90_A0A1X0WPY5	114.0	4.04e-32	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1542753_1	888049.HMPREF8578_0245	113.0	9.64e-33	N/A	N/A
structural_annotation	UHGV-1542753_1	PF01381,NF040507,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_2	phrog_998	334.0	0	endolysin	lysis
UniRef90	UHGV-1542753_2	UniRef90_A0A1X0WMG3	530.0	0	Lysin	N/A
eggNOG-mapper	UHGV-1542753_2	157924.Q9AF60_9CAUD	482.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-1542753_2	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
Pfam	UHGV-1542753_2	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
structural_annotation	UHGV-1542753_2	PF19127,PF05382,TIGR04035,NF008096,COG5263,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_3	phrog_608	152.6	1.4013e-45	holin	lysis
UniRef90	UHGV-1542753_3	UniRef90_A0A1F0BX11	190.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-1542753_3	1000588.HMPREF9965_1685	192.0	0	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1542753_3	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
NCBIFam	UHGV-1542753_3	TIGR01673.1	N/A	N/A	phage holin	N/A
PHROG	UHGV-1542753_4	phrog_199	70.1	2.6e-20	holin	lysis
UniRef90	UHGV-1542753_4	UniRef90_A0A109W864	281.0	0	Holin	N/A
eggNOG-mapper	UHGV-1542753_4	1000588.HMPREF9965_1686	246.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1542753_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1542753_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-1542753_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_5	phrog_1554	252.4	0	N/A	unknown function
UniRef90	UHGV-1542753_5	UniRef90_A0A139Q9H9	215.0	0	N/A	N/A
eggNOG-mapper	UHGV-1542753_5	1035189.HMPREF9954_1920	349.0	0	N/A	N/A
structural_annotation	UHGV-1542753_5	PF07104	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_6	phrog_12683	132.0	1.4e-39	N/A	unknown function
UniRef90	UHGV-1542753_6	UniRef90_A0A081R6K4	111.0	6.62e-31	ATP synthase F0 sector subunit C	N/A
eggNOG-mapper	UHGV-1542753_6	1095737.HMPREF1110_1748	115.0	4.7e-33	N/A	N/A
PHROG	UHGV-1542753_7	phrog_1210	719.6	0	PblB-type receptor binding	other
UniRef90	UHGV-1542753_7	UniRef90_UPI0009F3A55A	2106.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1542753_7	1000588.HMPREF9965_1689	1520.0	0	Chaperone of endosialidase	N/A
Pfam	UHGV-1542753_7	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-1542753_7	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1542753_7	PF14594,PF00629,TIGR01665,TIGR04362,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_8	phrog_33	60.9	5e-18	distal tail protein Dit	tail
UniRef90	UHGV-1542753_8	UniRef90_UPI00195B2D0A	333.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1542753_8	1297534.CAUJ01000005_gene171	469.0	0	N/A	N/A
structural_annotation	UHGV-1542753_8	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_9	phrog_15002	275.0	0	N/A	unknown function
UniRef90	UHGV-1542753_9	UniRef90_B1I7B2	1192.0	0	Prophage LambdaSa04, tail tape measure protein, family	N/A
eggNOG-mapper	UHGV-1542753_9	1297534.CAUJ01000005_gene172	1187.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1542753_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1542753_9	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1542753_9	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1542753_9	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_10	phrog_3343	331.5	0	N/A	unknown function
PHROG	UHGV-1542753_11	phrog_2634	349.1	0	major tail protein	tail
UniRef90	UHGV-1542753_11	UniRef90_A0A0A0YQP9	444.0	0	Major tail protein	N/A
Pfam	UHGV-1542753_11	PF06488	N/A	N/A	Phage tail tube protein	L_lac_phage_MSP
structural_annotation	UHGV-1542753_11	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_12	phrog_5	47.9	0.00000000000033	tail completion or Neck1 protein	connector
UniRef90	UHGV-1542753_12	UniRef90_A0A0T8CJ85	231.0	0	Bacteriophage pi2 protein 37	N/A
eggNOG-mapper	UHGV-1542753_12	272623.L58927	66.6	0.00000000000147	N/A	N/A
Pfam	UHGV-1542753_12	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
PHROG	UHGV-1542753_13	phrog_3334	254.0	0	N/A	unknown function
PHROG	UHGV-1542753_14	phrog_3332	205.9	0	head-tail adaptor	connector
UniRef90	UHGV-1542753_14	UniRef90_A0A0A0YRS5	168.0	0	Head-tail adapter protein	N/A
Pfam	UHGV-1542753_14	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
PHROG	UHGV-1542753_15	phrog_3305	218.9	0	virion structural protein	head and packaging
UniRef90	UHGV-1542753_15	UniRef90_A0A3B8DLV7	170.0	0	Glycerate kinase	N/A
PHROG	UHGV-1542753_16	phrog_10	97.6	1.7e-28	major head protein	head and packaging
UniRef90	UHGV-1542753_16	UniRef90_A0A0A0YQP6	758.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1542753_16	1566990.A0A0A0YQP6_9CAUD	758.0	0	peptidase activity	N/A
Pfam	UHGV-1542753_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1542753_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
KOfam	UHGV-1542753_17	K06904	144.8	8.09951e-43	N/A	N/A
PHROG	UHGV-1542753_17	phrog_80	156.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1542753_17	UniRef90_A0A0A0YV29	360.0	0	Prohead maturation protease	N/A
eggNOG-mapper	UHGV-1542753_17	1566990.A0A0A0YV29_9CAUD	360.0	0	peptidase activity	N/A
Pfam	UHGV-1542753_17	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1542753_17	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
structural_annotation	UHGV-1542753_17	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_18	phrog_12	133.1	1.6e-39	portal protein	head and packaging
UniRef90	UHGV-1542753_18	UniRef90_A0A0A0YSD7	743.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1542753_18	1566990.A0A0A0YSD7_9CAUD	743.0	0	Phage portal protein	N/A
Pfam	UHGV-1542753_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
structural_annotation	UHGV-1542753_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_19	phrog_9	319.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1542753_19	UniRef90_A0A7T2ZXC7	1070.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1542753_19	1566990.A0A0A0YRS2_9CAUD	1148.0	0	Phage Terminase	N/A
Pfam	UHGV-1542753_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1542753_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-1542753_19	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_20	phrog_3567	328.4	0	N/A	unknown function
UniRef90	UHGV-1542753_20	UniRef90_A0A7X1BZ96	90.5	4.92e-20	MerR family transcriptional regulator	N/A
PHROG	UHGV-1542753_21	phrog_119	72.4	5.4e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1542753_21	UniRef90_B1I799	210.0	0	HNH endonuclease domain protein	N/A
eggNOG-mapper	UHGV-1542753_21	1566990.A0A0A0YV65_9CAUD	188.0	0	HNH endonuclease	N/A
Pfam	UHGV-1542753_21	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-1542753_22	K04763	102.2	6.5e-30	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1542753_22	phrog_216	188.5	0	integrase	integration and excision
UniRef90	UHGV-1542753_22	UniRef90_A0A0A0YRV7	361.0	0	Site-specific recombinase	N/A
eggNOG-mapper	UHGV-1542753_22	1297534.CAUJ01000005_gene184	362.0	0	Integrase	N/A
Pfam	UHGV-1542753_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1542753_22	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1542753_22	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_23	phrog_36	75.9	5.9e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1542753_23	UniRef90_A0A116QW24	251.0	0	Bacteriophage transcriptional activator	N/A
eggNOG-mapper	UHGV-1542753_23	1069533.Sinf_0781	52.4	0.00000173	Transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-1542753_23	PF05263,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1542753_24	K22299	45.2	0.000000000002	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1542753_24	phrog_8	58.7	1.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1542753_24	UniRef90_A0A0A0YQT1	224.0	0	Cro repressor	N/A
eggNOG-mapper	UHGV-1542753_24	1280.SAXN108_1969	48.9	0.00000762	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1542753_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1542753_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1542753_24	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_25	phrog_7626	143.5	3.19496e-43	N/A	unknown function
PHROG	UHGV-1542753_26	phrog_884	106.7	1e-31	N/A	unknown function
UniRef90	UHGV-1542753_26	UniRef90_W1USP4	153.0	0	Gp27 family protein	N/A
eggNOG-mapper	UHGV-1542753_26	585203.SMSK564_1298	112.0	1.25e-31	N/A	N/A
Pfam	UHGV-1542753_26	PF07116	N/A	N/A	N/A	DUF1372
structural_annotation	UHGV-1542753_26	PF07116,COG3585	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_27	phrog_7136	54.9	0.0000000000000015	N/A	unknown function
PHROG	UHGV-1542753_28	phrog_121	127.7	1.2e-38	N/A	unknown function
UniRef90	UHGV-1542753_28	UniRef90_UPI00066D5CFD	464.0	0	N/A	N/A
eggNOG-mapper	UHGV-1542753_28	936580.HMPREF1516_0729	126.0	6.92e-33	N/A	N/A
Pfam	UHGV-1542753_28	PF07852	N/A	N/A	N/A	DUF1642
structural_annotation	UHGV-1542753_28	PF07852	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_29	phrog_6716	184.6	0	N/A	unknown function
UniRef90	UHGV-1542753_29	UniRef90_A0A0X8UVP8	207.0	0	3-dehydroquinate synthase	N/A
structural_annotation	UHGV-1542753_29	PF10694	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_30	phrog_98	67.0	2.8e-19	N/A	unknown function
UniRef90	UHGV-1542753_30	UniRef90_A0A110A0S1	274.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1542753_30	1035189.HMPREF9954_1949	247.0	0	YopX protein	N/A
Pfam	UHGV-1542753_30	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1542753_30	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_31	phrog_1992	152.3	1.4013e-45	MazG-like pyrophosphatase	other
UniRef90	UHGV-1542753_31	UniRef90_A0A0A0YRU9	311.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1542753_31	1297534.CAUJ01000005_gene196	302.0	0	Mazg nucleotide pyrophosphohydrolase	N/A
Pfam	UHGV-1542753_31	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-1542753_31	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1542753_31	PF08761,MF_01020,NF007113,COG4508	N/A	N/A	N/A	N/A
KOfam	UHGV-1542753_32	K07319	107.2	1.1e-31	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1542753_32	phrog_23224	221.1	0	DNA methyltransferase	other
UniRef90	UHGV-1542753_32	UniRef90_A0A4U9XXR4	442.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1542753_32	1566990.A0A0A0YX44_9CAUD	478.0	0	helicase activity	N/A
PADLOC	UHGV-1542753_32	MTase_II_00172	101.1	2.5e-31	Type II methyltransferase	RM
Pfam	UHGV-1542753_32	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-1542753_32	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1542753_33	K00558	303.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1542753_33	phrog_116	322.5	0	DNA methyltransferase	other
UniRef90	UHGV-1542753_33	UniRef90_A0A6I3UWI0	645.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1542753_33	1566990.A0A0A0YQS0_9CAUD	695.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1542753_33	MTase_II_00058	334.6	0	Type II methyltransferase	RM
Pfam	UHGV-1542753_33	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1542753_33	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
structural_annotation	UHGV-1542753_33	PF00145,MF_01857,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_34	phrog_1174	115.1	1.8e-34	N/A	unknown function
UniRef90	UHGV-1542753_34	UniRef90_A0A139PKK9	153.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-1542753_34	768726.HMPREF9178_1079	118.0	3.99e-34	N/A	N/A
KOfam	UHGV-1542753_35	K02315	165.2	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1542753_35	phrog_50	170.5	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1542753_35	UniRef90_A0A7G1IS63	493.0	0	DNA replication protein	N/A
eggNOG-mapper	UHGV-1542753_35	1566990.A0A0A0YSG2_9CAUD	499.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1542753_35	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
structural_annotation	UHGV-1542753_35	PF01695,MF_00377,NF005931,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_36	phrog_2108	88.5	3.4e-26	N/A	unknown function
UniRef90	UHGV-1542753_36	UniRef90_Q7Y4K4	89.7	1.05e-22	Gp20	N/A
KOfam	UHGV-1542753_37	K02086	80.2	3.2e-23	dnaD; DNA replication protein	N/A
PHROG	UHGV-1542753_37	phrog_11769	259.3	0	N/A	unknown function
UniRef90	UHGV-1542753_37	UniRef90_A0A1E8UDR9	484.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1542753_37	1035189.HMPREF9954_1960	474.0	0	Replication initiation and membrane attachment	N/A
Pfam	UHGV-1542753_37	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-1542753_37	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1542753_37	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1542753_37	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1542753_37	PF09681,PF07261,TIGR01714,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-1542753_38	phrog_7483	138.8	8.50028e-42	N/A	unknown function
UniRef90	UHGV-1542753_38	UniRef90_A0A0X8UVS5	127.0	5.57e-37	N/A	N/A
PHROG	UHGV-1542753_39	phrog_668	78.4	7.6e-23	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1542753_39	UniRef90_A0A7T3DZE1	175.0	0	DNA-binding protein	N/A
structural_annotation	UHGV-1542753_39	PF12728,NF033499,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-1542753_40	K07741	42.2	0.000000000023	antB; anti-repressor protein	N/A
PHROG	UHGV-1542753_40	phrog_463	286.2	0	anti-repressor	transcription regulation
UniRef90	UHGV-1542753_40	UniRef90_E9FJV2	454.0	0	BRO family, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-1542753_40	563038.HMPREF0851_00558	454.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1542753_40	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1542753_40	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1542753_40	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1542753_40	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1542753	Yes	29,000	39	88	1