vOTU vOTU-089146

vOTU: vOTU-089146

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-089146
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00048 → vGENUS-00024 → vOTU-089146
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0176146
Biosample ID	SAMN07449007
Genome length (bp)	48,724 bps
CheckV completeness	82.61% (Medium-quality)
CDS count	83
CDS density	87.10%
tRNA count	2
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis	Total connections	4633	Host agreement	81.96
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0176146_1	phrog_20593	44.3	0.0000000000024	N/A	unknown function
KOfam	UHGV-0176146_3	K03111	104.4	1.7e-30	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0176146_3	phrog_44	118.6	5.6e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176146_3	UniRef90_R9KY37	154.0	1.4013e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0176146_3	1235793.C809_02091	154.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0176146_3	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0176146_3	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0176146_3	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0176146_3	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0176146_3	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0176146_5	K06167	41.0	0.000000000021	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0176146_5	phrog_392	163.6	0	metal-dependent hydrolase	other
UniRef90	UHGV-0176146_5	UniRef90_A0A412RQX2	462.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0176146_5	397290.C810_01486	159.0	1.4013e-45	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0176146_5	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
dbAPIS	UHGV-0176146_5	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-0176146_5	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0176146_5	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_6	phrog_9822	174.3	0	N/A	unknown function
PHROG	UHGV-0176146_7	phrog_25456	79.8	2.2e-23	N/A	unknown function
PHROG	UHGV-0176146_8	phrog_2185	296.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176146_8	UniRef90_UPI001BC46C39	479.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0176146_8	658655.HMPREF0988_00886	370.0	0	N/A	N/A
Pfam	UHGV-0176146_8	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0176146_8	NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0176146_12	K19171	81.1	1e-23	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0176146_12	phrog_77	160.3	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176146_12	UniRef90_A0A412RQV0	937.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0176146_12	397290.C810_01461	308.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0176146_12	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0176146_12	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176146_15	UniRef90_UPI0008FDD6D4	100.0	2.24e-22	G5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0176146_15	742765.HMPREF9457_03017	106.0	2.99e-25	peptidase	N/A
COG	UHGV-0176146_15	COG4942	N/A	N/A	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	N/A
PHROG	UHGV-0176146_16	phrog_463	230.3	0	anti-repressor	transcription regulation
UniRef90	UHGV-0176146_16	UniRef90_A0A412RQX1	364.0	0	Phage repressor protein	N/A
eggNOG-mapper	UHGV-0176146_16	1304866.K413DRAFT_1188	172.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0176146_16	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0176146_16	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0176146_16	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0176146_16	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176146_20	UniRef90_A0A395X814	125.0	1.58e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176146_20	1121289.JHVL01000079_gene1187	60.1	0.0000000000336	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0176146_20	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0176146_20	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0176146_21	K22300	75.2	1.2e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0176146_21	phrog_8	59.0	1.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176146_21	UniRef90_A0A395X7H2	112.0	3.42e-30	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176146_21	397288.C806_00131	89.0	5.55e-21	Transcriptional	N/A
Pfam	UHGV-0176146_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176146_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0176146_21	PF01381,MF_02017,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176146_22	UniRef90_A0A8D9UIV6	68.2	0.00000000000156	RNAse domain protein	N/A
UniRef90	UHGV-0176146_24	UniRef90_A0A349YRM6	60.1	0.0000000000423	XkdX family protein	N/A
eggNOG-mapper	UHGV-0176146_24	411468.CLOSCI_01507	51.6	0.0000000162	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0176146_24	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0176146_24	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_25	phrog_20201	52.0	0.000000000000013	N/A	unknown function
KOfam	UHGV-0176146_26	K00986	134.4	1e-39	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0176146_26	phrog_1423	229.7	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176146_26	UniRef90_A0A1M7SMD9	323.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-0176146_26	665956.HMPREF1032_00691	306.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0176146_26	drt-UG17	104.1	1.5e-30	DRT	DRT
Pfam	UHGV-0176146_26	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0176146_26	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0176146_26	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_27	phrog_5302	334.0	0	tail protein	tail
UniRef90	UHGV-0176146_27	UniRef90_A0A345BPB9	265.0	0	Lectin	N/A
eggNOG-mapper	UHGV-0176146_27	428125.CLOLEP_01426	317.0	0	N/A	N/A
structural_annotation	UHGV-0176146_27	COG1262	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176146_28	476272.RUMHYD_01994	68.6	0.0000000000277	N/A	N/A
Pfam	UHGV-0176146_28	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
PHROG	UHGV-0176146_29	phrog_6616	507.8	0	tail protein	tail
UniRef90	UHGV-0176146_29	UniRef90_A0A412RR71	1565.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0176146_29	476272.RUMHYD_01992	357.0	0	N/A	N/A
Pfam	UHGV-0176146_29	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0176146_29	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_30	phrog_1194	121.4	3.8e-36	N/A	unknown function
eggNOG-mapper	UHGV-0176146_30	86416.Clopa_0588	88.6	3.57e-21	N/A	N/A
Pfam	UHGV-0176146_30	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0176146_30	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_31	phrog_1535	201.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0176146_31	397288.C806_03052	187.0	4.2039e-45	domain protein	N/A
COG	UHGV-0176146_31	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
KOfam	UHGV-0176146_32	K07273	160.2	0	acm; lysozyme	N/A
PHROG	UHGV-0176146_32	phrog_291	138.4	6.29996e-41	endolysin	lysis
UniRef90	UHGV-0176146_32	UniRef90_A0A174GRH8	581.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0176146_32	1235800.C819_00458	229.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0176146_32	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0176146_32	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0176146_32	PF01183,PF01471,MF_01672,COG3757,COG3409	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176146_35	UniRef90_R7BGF5	93.2	5.64e-21	Phage tail protein	N/A
structural_annotation	UHGV-0176146_35	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176146_36	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176146_37	1232453.BAIF02000058_gene1631	122.0	8.93e-33	N/A	N/A
AcrCatalog	UHGV-0176146_37	cluster_24841	154.0	0	NA	N/A
eggNOG-mapper	UHGV-0176146_38	1298920.KI911353_gene2656	61.2	0.000000000558	N/A	N/A
structural_annotation	UHGV-0176146_38	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_39	phrog_1129	76.2	2.6e-22	holin	lysis
UniRef90	UHGV-0176146_39	UniRef90_A0A412RR82	169.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0176146_39	411461.DORFOR_00721	87.8	1.14e-21	N/A	N/A
Pfam	UHGV-0176146_39	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0176146_39	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_40	phrog_4105	76.1	7.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0176146_40	411459.RUMOBE_00911	142.0	9.16449e-43	N/A	N/A
eggNOG-mapper	UHGV-0176146_41	397290.C810_01402	63.5	0.0000000000248	N/A	N/A
structural_annotation	UHGV-0176146_42	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_43	phrog_29	154.9	0	major head protein	head and packaging
UniRef90	UHGV-0176146_43	UniRef90_A0A412RQU1	695.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0176146_43	1296659.S5MNB6_9CAUD	165.0	5.60519e-45	Phage major capsid protein E	N/A
Pfam	UHGV-0176146_43	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0176146_43	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_44	phrog_909	78.0	8.9e-23	major head protein	head and packaging
UniRef90	UHGV-0176146_44	UniRef90_R7BGI8	189.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0176146_44	1078085.HMPREF1210_01145	62.4	0.0000000000426	N/A	N/A
UniRef90	UHGV-0176146_45	UniRef90_UPI000E41BB01	55.8	0.00000232	N/A	N/A
PHROG	UHGV-0176146_46	phrog_2662	57.1	1.9e-16	portal protein	head and packaging
UniRef90	UHGV-0176146_46	UniRef90_A0A412RR50	399.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0176146_46	1207076.ALAT01000105_gene1902	54.7	0.00000383	head morphogenesis protein, SPP1	N/A
Pfam	UHGV-0176146_46	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0176146_46	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176146_46	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_47	phrog_64	149.4	1.82169e-44	portal protein	head and packaging
UniRef90	UHGV-0176146_47	UniRef90_A0A412RQZ0	941.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0176146_47	1232453.BAIF02000058_gene1625	336.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0176146_47	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0176146_47	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_48	phrog_36	72.7	5.8e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176146_48	UniRef90_A0A6N7XL46	82.4	3.55e-17	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0176146_48	1123288.SOV_6c01520	77.4	3.8e-16	sigma factor activity	N/A
Pfam	UHGV-0176146_48	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0176146_48	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0176146_48	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_49	phrog_38	145.4	3.69943e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0176146_49	UniRef90_A0A8D9UIV2	1008.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0176146_49	397290.C810_01390	681.0	0	chromosome segregation	N/A
COG	UHGV-0176146_49	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176146_49	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_50	phrog_2316	59.5	6.6e-17	N/A	unknown function
UniRef90	UHGV-0176146_50	UniRef90_A0A3E4YBW5	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-0176146_50	1280676.AUJO01000024_gene3262	68.9	0.0000000000000498	N/A	N/A
Pfam	UHGV-0176146_50	PF16475	N/A	N/A	N/A	DUF5052
structural_annotation	UHGV-0176146_50	PF16475,MF_00436,NF033216,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_55	phrog_872	109.5	2.8e-32	N/A	unknown function
UniRef90	UHGV-0176146_55	UniRef90_UPI001EE041E7	133.0	4.46e-39	N/A	N/A
eggNOG-mapper	UHGV-0176146_55	688245.CtCNB1_2652	103.0	5.74e-27	N/A	N/A
Pfam	UHGV-0176146_55	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0176146_55	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0176146_55	PF11195	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176146_57	UniRef90_A0A8D9PGN8	61.2	0.000000000092	Acetyl-coA carboxylase zinc finger domain protein	N/A
UniRef90	UHGV-0176146_58	UniRef90_A0A8D9PGN8	64.3	0.00000000000732	Acetyl-coA carboxylase zinc finger domain protein	N/A
structural_annotation	UHGV-0176146_60	PF04466	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176146_62	UniRef90_A0A8D9PGW1	57.8	0.00000000105	HTH psq-type domain-containing protein	N/A
structural_annotation	UHGV-0176146_62	PF05225,COG2886	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_63	phrog_4707	76.4	4.2e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0176146_63	1122172.KB890259_gene1441	120.0	3.73e-29	N/A	N/A
Pfam	UHGV-0176146_63	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0176146_63	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0176146_63	NF040939,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_65	phrog_236	51.2	0.000000000000029	nucleotide kinase	other
UniRef90	UHGV-0176146_65	UniRef90_A0A412RQV8	239.0	0	N/A	N/A
eggNOG-mapper	UHGV-0176146_65	1200557.JHWV01000001_gene285	70.5	0.0000000000011	N/A	N/A
Pfam	UHGV-0176146_65	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0176146_65	PF11753	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176146_66	658655.HMPREF0988_00895	89.4	6.34e-20	N/A	N/A
PHROG	UHGV-0176146_67	phrog_13890	42.6	0.0000000000066	N/A	unknown function
eggNOG-mapper	UHGV-0176146_70	658659.HMPREF0983_00103	90.1	2.17e-20	N/A	N/A
structural_annotation	UHGV-0176146_70	PF18847,NF002761,COG1847	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_76	phrog_1233	50.4	0.000000000000036	N/A	unknown function
eggNOG-mapper	UHGV-0176146_76	658655.HMPREF0988_00914	90.9	2.51e-22	N/A	N/A
eggNOG-mapper	UHGV-0176146_77	658655.HMPREF0988_00915	122.0	1.24e-31	N/A	N/A
PHROG	UHGV-0176146_78	phrog_20016	219.4	0	N/A	unknown function
UniRef90	UHGV-0176146_78	UniRef90_A0A285PT46	159.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0176146_78	397290.C810_05214	222.0	0	N/A	N/A
structural_annotation	UHGV-0176146_78	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0176146_79	phrog_16490	166.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0176146_79	397290.C810_01328	174.0	0	N/A	N/A
eggNOG-mapper	UHGV-0176146_80	658655.HMPREF0988_00918	75.9	1.87e-17	N/A	N/A
eggNOG-mapper	UHGV-0176146_81	658655.HMPREF0988_00919	93.6	5.22e-22	N/A	N/A
KOfam	UHGV-0176146_83	K14059	201.6	0	int; integrase	N/A
PHROG	UHGV-0176146_83	phrog_1	181.3	0	integrase	integration and excision
UniRef90	UHGV-0176146_83	UniRef90_R6CA87	395.0	0	Site-specific recombinase phage integrase family	N/A
eggNOG-mapper	UHGV-0176146_83	411489.CLOL250_01458	376.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0176146_83	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0176146_83	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0176146_83	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0176146	Yes	48,724	39	83	1