vOTU vOTU-089344

vOTU: vOTU-089344

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-089344
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00074 → vSUBFAM-03280 → vGENUS-07455 → vOTU-089344
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → UBA1740 → UBA1740 sp900767415
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0004302
Biosample ID	SAMEA4765760
Genome length (bp)	28,392 bps
CheckV completeness	85.37% (Medium-quality)
CDS count	43
CDS density	95.17%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → UBA1740 → UBA1740 sp900767415	Total connections	2	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → UBA1740 → UBA1740 sp900767415	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 85.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0004302_1	phrog_15768	86.6	4.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0004302_1	1095750.HMPREF9970_1674	134.0	2.3e-34	N/A	N/A
structural_annotation	UHGV-0004302_1	PF10771,NF006999,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-0004302_5	phrog_253	99.1	4.7e-29	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004302_5	UniRef90_A0A1C5N4H2	92.0	1.64e-20	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0004302_5	1226322.HMPREF1545_04074	64.3	0.000000000127	Siphovirus Gp157	N/A
Pfam	UHGV-0004302_5	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0004302_5	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0004302_6	phrog_14970	191.2	0	N/A	unknown function
UniRef90	UHGV-0004302_6	UniRef90_UPI00123F00F5	184.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0004302_6	1122981.AUME01000026_gene555	146.0	9.62972e-42	double-strand break repair protein	N/A
Pfam	UHGV-0004302_6	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0004302_6	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0004302_6	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0004302_7	phrog_72	60.4	2.7e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004302_7	UniRef90_UPI000C7BF263	134.0	7.29e-37	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0004302_7	445972.ANACOL_01825	117.0	4.64e-31	N/A	N/A
Pfam	UHGV-0004302_7	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0004302_7	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0004302_8	phrog_7566	84.4	9.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0004302_8	1118057.CAGX01000020_gene1648	63.2	0.00000000000579	N/A	N/A
Pfam	UHGV-0004302_8	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-0004302_9	K03111	131.2	1.2e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0004302_9	phrog_44	120.6	1.4e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0004302_9	UniRef90_A0A2V2FDW3	164.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0004302_9	1235835.C814_01372	115.0	7.29e-31	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0004302_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0004302_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0004302_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0004302_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0004302_9	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0004302_11	phrog_4973	64.1	2.1e-18	N/A	unknown function
UniRef90	UHGV-0004302_11	UniRef90_A0A3D3Y0P8	68.6	0.00000000000011	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0004302_11	339671.Asuc_1218	48.9	0.00000133	Helix-turn-helix domain	N/A
Pfam	UHGV-0004302_11	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0004302_11	PF14090,MF_01586,TIGR00373,COG5625	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0004302_12	PF18618	N/A	N/A	N/A	N/A
PHROG	UHGV-0004302_14	phrog_424	77.4	9.7e-23	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0004302_14	693746.OBV_43240	504.0	0	N/A	N/A
COG	UHGV-0004302_14	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0004302_14	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0004302_15	phrog_599	47.3	0.00000000000044	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0004302_15	UniRef90_UPI000DA5F351	122.0	1.59e-34	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0004302_15	1235790.C805_00069	47.0	0.00000935	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0004302_15	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0004302_15	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0004302_21	phrog_3136	124.6	3.6e-37	N/A	unknown function
UniRef90	UHGV-0004302_21	UniRef90_UPI001CBCD733	120.0	7.21e-31	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0004302_21	97139.C824_00742	61.2	0.00000000359	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0004302_21	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0004302_21	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0004302_22	phrog_7625	52.1	0.0000000000000079	head morphogenesis	head and packaging
eggNOG-mapper	UHGV-0004302_22	394503.Ccel_3048	91.7	4.81e-18	Phage minor capsid protein 2	N/A
COG	UHGV-0004302_22	COG2733	N/A	N/A	N/A	N/A
KOfam	UHGV-0004302_24	K21138	79.8	5.4e-23	HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2]	N/A
PHROG	UHGV-0004302_24	phrog_990	124.7	6e-37	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0004302_24	UniRef90_A0A412G3J0	147.0	1.02995e-42	HD domain-containing protein	N/A
eggNOG-mapper	UHGV-0004302_24	663952.SDD27957_09155	141.0	3.16007e-41	Guanosine polyphosphate pyrophosphohydrolases synthetases	N/A
Pfam	UHGV-0004302_24	PF13328	N/A	N/A	HD domain	HD_4
COG	UHGV-0004302_24	COG0317	N/A	N/A	(p)ppGpp synthase/hydrolase, HD superfamily	N/A
structural_annotation	UHGV-0004302_24	PF13328	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004302_25	UniRef90_A0A1Q6KPN9	65.5	0.00000000013	HTH psq-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0004302_25	1235790.C805_00037	63.5	0.0000000000829	N/A	N/A
KOfam	UHGV-0004302_26	K06909	104.5	1.2e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0004302_26	phrog_2	119.1	6.1e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0004302_26	UniRef90_A0A3C1A8K4	251.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0004302_26	411460.RUMTOR_02085	186.0	0	N/A	N/A
Pfam	UHGV-0004302_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0004302_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0004302_26	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0004302_27	phrog_533	86.8	8.3e-26	portal protein	head and packaging
Pfam	UHGV-0004302_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0004302_27	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0004302_28	phrog_581	107.5	1.7e-31	minor head protein	head and packaging
UniRef90	UHGV-0004302_28	UniRef90_A0A2Z4GUI4	148.0	5.6e-38	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0004302_28	285514.JNWO01000004_gene6426	59.7	0.000000585	Phage minor capsid protein 2	N/A
Pfam	UHGV-0004302_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-0004302_28	PF06152,TIGR01641	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0004302_30	553973.CLOHYLEM_05487	57.4	0.00000507	Chitobiase/beta-hexosaminidase C-terminal domain	N/A
Pfam	UHGV-0004302_30	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
COG	UHGV-0004302_30	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0004302_30	PF05065,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0004302_31	phrog_16619	76.4	1.5e-22	minor head protein	head and packaging
structural_annotation	UHGV-0004302_34	PF07405,TIGR01563	N/A	N/A	N/A	N/A
UniRef90	UHGV-0004302_35	UniRef90_A0A2Z4GU91	77.4	5.16e-16	Minor capsid protein	N/A
UniRef90	UHGV-0004302_38	UniRef90_A0A2U2MVK3	68.2	0.000000000216	Gln_amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0004302_38	476272.RUMHYD_02847	63.9	0.00000000893	head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0004302_38	PF15644	N/A	N/A	Papain fold toxin 1, glutamine deamidase	Gln_amidase
COG	UHGV-0004302_38	COG2369	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0004302	Yes	28,392	53	85	1