vOTU vOTU-089765

vOTU: vOTU-089765

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-089765
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia
Taxonomy (UHGV)	vFAM-00001 → vOTU-089765
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → UBA5884 → UBA5884 sp018376535
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0039039
Biosample ID	SAMEA4765766
Genome length (bp)	30,847 bps
CheckV completeness	84.05% (Medium-quality)
CDS count	47
CDS density	90.89%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → UBA5884 → UBA5884 sp018376535	Total connections	11	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 84.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0039039_1	K22300	57.1	3.7e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0039039_1	phrog_8	44.2	0.0000000000039	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039039_1	UniRef90_A0A1C6DZ82	126.0	6.55e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0039039_1	663278.Ethha_2377	59.3	0.00000000134	sequence-specific DNA binding	N/A
Pfam	UHGV-0039039_1	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0039039_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0039039_1	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0039039_2	K23779	58.2	2.1e-16	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0039039_2	phrog_3	48.7	0.0000000000003	transcriptional repressor	transcription regulation
UniRef90	UHGV-0039039_2	UniRef90_A0A356CYS7	57.0	0.00000000769	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039039_2	637905.SVI_0516	55.1	0.0000000417	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0039039_2	retron_type_VI_hth_cluster2_1	50.4	0.00000000000006	N/A	Retron
Pfam	UHGV-0039039_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039039_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0039039_2	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039039_5	PF01376	N/A	N/A	N/A	N/A
KOfam	UHGV-0039039_7	K07497	50.6	0.000000000000016	K07497; putative transposase	N/A
PHROG	UHGV-0039039_7	phrog_310	316.3	0	transposase	integration and excision
UniRef90	UHGV-0039039_7	UniRef90_A0A349GP78	551.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0039039_7	1160721.RBI_II00555	504.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-0039039_7	TnsB_0_V-K	65.6	6.8e-19	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-0039039_7	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0039039_7	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-0039039_7	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0039039_7	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0039039_8	K07132	55.8	6.9e-16	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-0039039_8	phrog_296	94.2	1.7e-27	DNA transposition protein	integration and excision
UniRef90	UHGV-0039039_8	UniRef90_UPI001D0672F9	210.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0039039_8	1160721.RBI_II00554	200.0	0	AAA domain	N/A
Pfam	UHGV-0039039_8	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0039039_8	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-0039039_8	PF13401,MF_01407,TIGR03015,COG2842	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_9	phrog_4292	57.2	1.2e-16	N/A	unknown function
UniRef90	UHGV-0039039_9	UniRef90_A8ATM6	53.5	0.0000000274	Gp68	N/A
eggNOG-mapper	UHGV-0039039_9	645991.Sgly_0752	47.4	0.00000129	N/A	N/A
eggNOG-mapper	UHGV-0039039_13	1160721.RBI_II00551	129.0	8.73e-35	N/A	N/A
PHROG	UHGV-0039039_14	phrog_286	57.2	3.7e-16	N/A	unknown function
UniRef90	UHGV-0039039_14	UniRef90_UPI000F52EBD0	77.0	0.0000000000000167	N/A	N/A
eggNOG-mapper	UHGV-0039039_14	552398.HMPREF0866_03127	73.2	0.0000000000000586	N/A	N/A
Pfam	UHGV-0039039_14	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-0039039_14	PF06252	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_15	phrog_836	63.1	4.8e-18	late transcriptional activator	transcription regulation
UniRef90	UHGV-0039039_15	UniRef90_A0A3C0QMZ4	90.9	3.56e-22	Mor domain-containing protein	N/A
eggNOG-mapper	UHGV-0039039_15	663278.Ethha_2394	83.6	7.56e-20	Mor transcription activator	N/A
Pfam	UHGV-0039039_15	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-0039039_15	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-0039039_15	PF08765,COG5566	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039039_16	1160721.RBI_II00548	69.3	0.0000000000000181	N/A	N/A
PHROG	UHGV-0039039_17	phrog_25462	122.0	2.2e-36	N/A	unknown function
UniRef90	UHGV-0039039_17	UniRef90_A0A349GP70	162.0	0	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-0039039_17	1160721.RBI_II00547	127.0	6.55e-37	N/A	N/A
structural_annotation	UHGV-0039039_17	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_18	phrog_426	99.1	5.2e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0039039_18	UniRef90_UPI000F520548	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039039_18	411473.RUMCAL_01919	204.0	0	N/A	N/A
Pfam	UHGV-0039039_18	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-0039039_18	PF11985	N/A	N/A	N/A	N/A
KOfam	UHGV-0039039_19	K02601	61.8	1.2e-17	nusG; transcription termination/antitermination protein NusG	N/A
PHROG	UHGV-0039039_19	phrog_6386	89.2	3.9e-26	transcription antiterminator	transcription regulation
UniRef90	UHGV-0039039_19	UniRef90_A0A349GP68	154.0	2.8026e-45	NGN domain-containing protein	N/A
eggNOG-mapper	UHGV-0039039_19	1160721.RBI_II00545	86.7	2.5e-19	Transcription termination factor nusG	N/A
Pfam	UHGV-0039039_19	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-0039039_19	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-0039039_19	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039039_20	411473.RUMCAL_01921	97.1	1.36e-24	N/A	N/A
KOfam	UHGV-0039039_21	K06909	149.4	2.94273e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0039039_21	phrog_10250	174.6	0	N/A	unknown function
UniRef90	UHGV-0039039_21	UniRef90_U2LZ34	533.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0039039_21	411473.RUMCAL_01923	533.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0039039_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0039039_21	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0039039_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0039039_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0039039_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_22	phrog_533	309.2	0	portal protein	head and packaging
UniRef90	UHGV-0039039_22	UniRef90_A0A349GQA3	502.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0039039_22	411473.RUMCAL_01924	425.0	0	N/A	N/A
structural_annotation	UHGV-0039039_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_23	phrog_581	291.4	0	minor head protein	head and packaging
UniRef90	UHGV-0039039_23	UniRef90_A0A1C6I5M7	384.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0039039_23	411473.RUMCAL_01925	361.0	0	N/A	N/A
Pfam	UHGV-0039039_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0039039_23	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_26	phrog_194	63.3	4.8e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0039039_26	UniRef90_R7FEY9	169.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0039039_26	411473.RUMCAL_01929	169.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0039039_26	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0039039_26	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_27	phrog_267	84.1	1e-24	major head protein	head and packaging
UniRef90	UHGV-0039039_27	UniRef90_D4LDZ8	517.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0039039_27	718252.FP2_06660	258.0	0	N/A	N/A
structural_annotation	UHGV-0039039_27	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_28	phrog_541	92.0	4.5e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0039039_28	642492.Clole_0822	85.1	1.97e-19	N/A	N/A
PHROG	UHGV-0039039_29	phrog_3366	70.4	5.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0039039_29	411473.RUMCAL_01932	97.4	8.52e-25	N/A	N/A
Pfam	UHGV-0039039_29	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0039039_29	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_30	phrog_556	94.4	8.2e-28	minor head protein	head and packaging
UniRef90	UHGV-0039039_30	UniRef90_A0A3C0QTS8	92.8	3.61e-22	Capsid protein	N/A
eggNOG-mapper	UHGV-0039039_30	645991.Sgly_0344	79.0	3.48e-17	N/A	N/A
Pfam	UHGV-0039039_30	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0039039_30	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_31	phrog_3266	152.6	1.4013e-45	tail completion	connector
UniRef90	UHGV-0039039_31	UniRef90_A0A355UZ60	171.0	0	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0039039_31	411473.RUMCAL_01934	164.0	0	N/A	N/A
structural_annotation	UHGV-0039039_31	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_32	phrog_3099	143.8	4.49817e-43	N/A	unknown function
eggNOG-mapper	UHGV-0039039_32	411473.RUMCAL_01935	215.0	0	N/A	N/A
structural_annotation	UHGV-0039039_32	PF08813,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_33	phrog_4450	76.9	2.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0039039_33	641112.ACOK01000073_gene2902	92.0	2.06e-22	N/A	N/A
Pfam	UHGV-0039039_33	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0039039_33	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_34	phrog_706	136.7	1.2e-40	N/A	unknown function
UniRef90	UHGV-0039039_34	UniRef90_A0A173TSE6	148.0	8.83939e-42	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0039039_34	411473.RUMCAL_01937	158.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0039039_34	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0039039_34	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_35	phrog_1272	227.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0039039_35	411473.RUMCAL_01938	358.0	0	tail tape measure protein, TP901	N/A
Pfam	UHGV-0039039_35	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0039039_35	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0039039_35	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039039_37	PF14594,TIGR03361,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-0039039_38	K19721	63.5	8.5e-19	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0039039_38	phrog_25888	141.7	9.80909e-45	N/A	unknown function
eggNOG-mapper	UHGV-0039039_38	411473.RUMCAL_01941	158.0	6.49e-40	cell adhesion	N/A
Pfam	UHGV-0039039_38	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0039039_38	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
structural_annotation	UHGV-0039039_38	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-0039039_40	K01447	94.7	1.3e-27	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0039039_40	phrog_1794	92.8	3.8e-35	amidase	lysis
UniRef90	UHGV-0039039_40	UniRef90_A0A374VU40	247.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0039039_40	411473.RUMCAL_00096	246.0	0	Ami_2	N/A
Pfam	UHGV-0039039_40	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0039039_40	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0039039_40	PF01510,PF18342,MF_04111,NF008758,NF041850,COG3023,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-0039039_41	K06223	218.8	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0039039_41	phrog_56	192.7	0	DNA methyltransferase	other
UniRef90	UHGV-0039039_41	UniRef90_A0A3D4JKP8	408.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0039039_41	1160721.RBI_II00519	328.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0039039_41	MTase_II_00039	130.0	3.7e-38	Type II methyltransferase	RM
Pfam	UHGV-0039039_41	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0039039_41	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0039039_41	PF02086,TIGR00571,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0039039_42	phrog_6244	67.5	2.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0039039_42	1298920.KI911353_gene2076	64.3	0.00000000000266	N/A	N/A
KOfam	UHGV-0039039_43	K07727	87.1	3e-25	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0039039_43	UniRef90_A0A6N9PVQ2	128.0	5.22e-37	XRE family transcriptional regulator (Fragment)	N/A
eggNOG-mapper	UHGV-0039039_43	445972.ANACOL_00561	124.0	5.74e-36	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0039039_43	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0039039_43	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0039039_43	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039039_46	PF09274,NF008671,COG4710	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0039039	Yes	30,847	34	84	1