vOTU vOTU-089876

vOTU: vOTU-089876

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-089876
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00005 → vGENUS-11894 → vOTU-089876
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0225665
Biosample ID	SAMEA4813981
Genome length (bp)	27,598 bps
CheckV completeness	65.09% (Medium-quality)
CDS count	48
CDS density	94.10%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	43	Host agreement	83.72
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 65.09)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0225665_2	K08640	106.1	5.6e-31	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0225665_2	phrog_894	105.8	5e-31	endolysin	lysis
UniRef90	UHGV-0225665_2	UniRef90_K1TJK4	216.0	0	Peptidase_M15_3 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0225665_2	1235797.C816_04171	193.0	0	Peptidase M15	N/A
Pfam	UHGV-0225665_2	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0225665_2	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0225665_2	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_3	phrog_18955	75.2	6.3e-22	N/A	unknown function
UniRef90	UHGV-0225665_3	UniRef90_UPI00164D2830	366.0	0	phosphodiester glycosidase family protein	N/A
eggNOG-mapper	UHGV-0225665_3	1121381.JNIV01000121_gene904	55.8	0.00000244	LysM domain	N/A
Pfam	UHGV-0225665_3	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-0225665_3	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0225665_3	PF09992,COG4632	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_5	phrog_13256	65.3	6.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0225665_5	1226322.HMPREF1545_00132	72.4	4.53e-16	N/A	N/A
PHROG	UHGV-0225665_6	phrog_1863	64.0	1.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0225665_6	748224.HMPREF9436_01412	97.4	7.79e-26	N/A	N/A
structural_annotation	UHGV-0225665_8	PF21722,PF07210,TIGR04134	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_9	phrog_18725	87.6	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0225665_9	1226322.HMPREF1545_00062	119.0	3.53e-32	N/A	N/A
PHROG	UHGV-0225665_11	phrog_13879	259.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0225665_11	693746.OBV_18210	542.0	0	N/A	N/A
structural_annotation	UHGV-0225665_11	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_12	phrog_1194	65.6	7.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0225665_12	1226322.HMPREF1545_00060	238.0	0	N/A	N/A
structural_annotation	UHGV-0225665_12	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_13	phrog_1535	91.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0225665_13	693746.OBV_18190	427.0	0	domain protein	N/A
COG	UHGV-0225665_13	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_14	phrog_7115	120.7	7.1e-36	N/A	unknown function
UniRef90	UHGV-0225665_14	UniRef90_UPI0005D27B94	196.0	0	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-0225665_14	1514668.JOOA01000002_gene2950	196.0	0	Bacterial PH domain	N/A
Pfam	UHGV-0225665_14	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-0225665_14	PF08000,MF_00437	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_15	phrog_706	116.6	2e-34	N/A	unknown function
UniRef90	UHGV-0225665_15	UniRef90_UPI000682A80B	213.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0225665_15	693746.OBV_18170	204.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0225665_15	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0225665_15	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_16	phrog_11299	87.4	1.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0225665_16	693746.OBV_18160	211.0	0	N/A	N/A
structural_annotation	UHGV-0225665_16	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_17	phrog_3099	57.3	3.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0225665_17	1235797.C816_04186	154.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-0225665_17	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_18	phrog_3266	53.7	0.000000000000003	tail completion	connector
eggNOG-mapper	UHGV-0225665_18	1232443.BAIA02000078_gene24	143.0	6.54967e-42	N/A	N/A
structural_annotation	UHGV-0225665_18	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_19	phrog_556	73.7	2e-21	minor head protein	head and packaging
UniRef90	UHGV-0225665_19	UniRef90_UPI00195E1497	169.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0225665_19	1226322.HMPREF1545_00054	127.0	9.73e-36	Minor capsid protein	N/A
Pfam	UHGV-0225665_19	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0225665_19	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_20	phrog_3366	89.0	4.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0225665_20	1226322.HMPREF1545_00053	155.0	0	N/A	N/A
structural_annotation	UHGV-0225665_20	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_21	phrog_541	100.9	8.4e-30	head-tail adaptor	connector
UniRef90	UHGV-0225665_21	UniRef90_A0A371AQT0	58.9	0.0000000189	N/A	N/A
eggNOG-mapper	UHGV-0225665_21	1120998.AUFC01000030_gene2237	71.2	0.0000000000000458	N/A	N/A
PHROG	UHGV-0225665_22	phrog_10	165.1	0	major head protein	head and packaging
UniRef90	UHGV-0225665_22	UniRef90_A0A2U1BEF2	539.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0225665_22	1226322.HMPREF1545_00050	478.0	0	Phage capsid family	N/A
Pfam	UHGV-0225665_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0225665_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0225665_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0225665_22	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_23	phrog_2303	61.6	1.1e-17	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0225665_23	1226322.HMPREF1545_00049	181.0	0	N/A	N/A
PHROG	UHGV-0225665_25	phrog_581	288.5	0	minor head protein	head and packaging
UniRef90	UHGV-0225665_25	UniRef90_A0A1C5N7V1	459.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0225665_25	1226322.HMPREF1545_00046	372.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0225665_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0225665_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0225665_25	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_27	phrog_8680	230.8	0	N/A	unknown function
UniRef90	UHGV-0225665_27	UniRef90_A0A3R6D7I3	260.0	0	N/A	N/A
eggNOG-mapper	UHGV-0225665_27	411470.RUMGNA_02208	236.0	0	N/A	N/A
Pfam	UHGV-0225665_27	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0225665_27	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_28	phrog_9479	173.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0225665_28	1514668.JOOA01000002_gene2680	50.4	0.00000451	N/A	N/A
structural_annotation	UHGV-0225665_28	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_30	phrog_533	385.3	0	portal protein	head and packaging
UniRef90	UHGV-0225665_30	UniRef90_A0A1C5N775	714.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0225665_30	1226322.HMPREF1545_00044	672.0	0	N/A	N/A
Pfam	UHGV-0225665_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0225665_30	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0225665_31	K06909	388.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0225665_31	phrog_3717	158.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0225665_31	UniRef90_A0A2U1BEH4	744.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0225665_31	33035.JPJF01000106_gene3136	466.0	0	Terminase small subunit	N/A
Pfam	UHGV-0225665_31	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0225665_31	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0225665_31	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0225665_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0225665_31	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_32	phrog_606	79.2	5.2e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0225665_32	UniRef90_UPI00195648BB	164.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0225665_32	397290.C810_05185	150.0	2.66247e-44	DNA-packaging protein gp3	N/A
Pfam	UHGV-0225665_32	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0225665_32	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0225665_35	UniRef90_A0A8D9PDT5	197.0	0	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-0225665_36	phrog_3136	132.1	1.8e-39	N/A	unknown function
UniRef90	UHGV-0225665_36	UniRef90_A0A3D0HBD2	137.0	8.51e-38	ASCH domain-containing protein	N/A
COG	UHGV-0225665_36	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0225665_36	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0225665_39	K00558	40.2	0.000000000025	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0225665_39	phrog_757	117.3	9.7e-35	DNA methyltransferase	other
UniRef90	UHGV-0225665_39	UniRef90_A0A8D9PDD1	403.0	0	DNA (Cytosine 5) methyltransferase	N/A
eggNOG-mapper	UHGV-0225665_39	622312.ROSEINA2194_01264	363.0	0	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0225665_39	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0225665_39	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0225665_44	K00390	105.6	5.4e-31	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0225665_44	phrog_424	115.6	4e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0225665_44	UniRef90_UPI001D087498	435.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0225665_44	1408437.JNJN01000032_gene2312	324.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-0225665_44	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0225665_44	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0225665_44	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0225665_45	phrog_474	94.8	1.4e-27	phosphofructokinase	other
UniRef90	UHGV-0225665_45	UniRef90_A0A2V2EHL9	151.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0225665_45	1203606.HMPREF1526_00237	99.0	9.91e-26	N/A	N/A
Pfam	UHGV-0225665_45	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0225665_45	PF19905	N/A	N/A	N/A	N/A
KOfam	UHGV-0225665_47	K01160	64.8	2.2e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0225665_47	phrog_140	120.8	8.9e-36	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0225665_47	UniRef90_UPI000833193D	105.0	1.54e-26	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0225665_47	1095750.HMPREF9970_1673	89.4	6.4e-21	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0225665_47	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0225665_47	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0225665_47	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0225665	Yes	27,598	53	65	1