vOTU vOTU-089970

vOTU: vOTU-089970

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-089970
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-03494 → vGENUS-05176 → vOTU-089970
Host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Atopobiaceae → Lancefieldella → Lancefieldella sp000564995
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1509799
Biosample ID	SAMEA2738064
Genome length (bp)	30,659 bps
CheckV completeness	89.30% (Medium-quality)
CDS count	44
CDS density	90.12%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Atopobiaceae → Lancefieldella → Lancefieldella sp000564995	Total connections	5	Host agreement	80
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 89.3)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1509799_1	K23779	43.2	0.0000000000075	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1509799_1	phrog_5823	40.6	0.000000000031	transcriptional regulator	transcription regulation
Pfam	UHGV-1509799_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1509799_1	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1509799_1	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1509799_3	K07741	99.3	8.8e-29	antB; anti-repressor protein	N/A
PHROG	UHGV-1509799_3	phrog_130	213.9	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1509799_3	UniRef90_UPI000E3CDD67	310.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-1509799_3	553184.ATORI0001_1204	268.0	0	Antirepressor	N/A
Pfam	UHGV-1509799_3	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1509799_3	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1509799_3	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1509799_3	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
Pfam	UHGV-1509799_4	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1509799_4	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1509799_6	PF02559,TIGR03318,COG1329	N/A	N/A	N/A	N/A
KOfam	UHGV-1509799_8	K01160	55.4	0.0000000000000018	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1509799_8	phrog_140	78.3	1.2e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1509799_8	UniRef90_A0A133XPE4	105.0	1.88e-26	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1509799_8	479437.Elen_2598	72.8	0.0000000000000227	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1509799_8	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1509799_8	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1509799_8	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_10	phrog_5479	57.2	3e-16	N/A	unknown function
COG	UHGV-1509799_10	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
KOfam	UHGV-1509799_11	K14194	40.5	0.0000000000029	sdrC_D_E; serine-aspartate repeat-containing protein C/D/E	N/A
UniRef90	UHGV-1509799_11	UniRef90_UPI000462832A	63.5	0.0000000707	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1509799_11	661087.HMPREF1008_00250	132.0	2.01e-30	cell wall anchor domain	N/A
Pfam	UHGV-1509799_11	PF17961	N/A	N/A	Bacterial Ig domain	Big_8
Pfam	UHGV-1509799_11	PF05737	N/A	N/A	Collagen binding domain	Collagen_bind
COG	UHGV-1509799_11	COG4932	N/A	N/A	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	N/A
structural_annotation	UHGV-1509799_11	PF11766,NF033845,COG1470	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_13	phrog_34396	168.9	0	N/A	unknown function
UniRef90	UHGV-1509799_13	UniRef90_UPI0009355547	134.0	3.6e-33	N/A	N/A
Pfam	UHGV-1509799_13	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1509799_13	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_14	phrog_10048	166.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1509799_14	882.DVU_1523	147.0	1.04e-39	N/A	N/A
KOfam	UHGV-1509799_15	K03111	133.1	3.2e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1509799_15	phrog_44	134.6	6.8e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1509799_15	UniRef90_Z4WX95	217.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1509799_15	521095.Apar_0020	217.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1509799_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1509799_15	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1509799_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1509799_15	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1509799_15	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1509799_17	1125712.HMPREF1316_1526	60.8	0.00000000293	N/A	N/A
structural_annotation	UHGV-1509799_17	PF04545,MF_00674,TIGR03879	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_18	phrog_940	262.7	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1509799_18	UniRef90_R7BP41	402.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1509799_18	1232449.BAHV02000018_gene1534	298.0	0	N/A	N/A
PADLOC	UHGV-1509799_18	MTase_II_00015	46.4	0.00000000000069	Type II methyltransferase	RM
Pfam	UHGV-1509799_18	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1509799_18	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1509799_18	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1509799_18	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
UniRef90	UHGV-1509799_21	UniRef90_A0A133XS49	146.0	6.62814e-43	Phage terminase, small subunit, P27 family	N/A
Pfam	UHGV-1509799_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1509799_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_22	phrog_9	153.6	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1509799_22	UniRef90_UPI001D09400E	541.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1509799_22	521003.COLINT_02339	403.0	0	Terminase	N/A
COG	UHGV-1509799_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1509799_22	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_23	phrog_104	218.5	0	portal protein	head and packaging
UniRef90	UHGV-1509799_23	UniRef90_A0A374VFC7	552.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1509799_23	742742.HMPREF9452_01310	220.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1509799_23	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1509799_23	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_24	phrog_13257	95.2	7.8e-28	head maturation protease	head and packaging
UniRef90	UHGV-1509799_24	UniRef90_A0A6M8IWT8	122.0	7.47e-29	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1509799_24	1095772.CAHH01000063_gene655	70.5	0.0000000000148	N/A	N/A
PHROG	UHGV-1509799_25	phrog_9857	79.6	3.9e-23	head scaffolding protein	head and packaging
PHROG	UHGV-1509799_26	phrog_544	103.2	2.7e-30	major head protein	head and packaging
UniRef90	UHGV-1509799_26	UniRef90_A0A7K3KIA2	266.0	0	Rho_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1509799_26	1121866.AUGK01000014_gene2054	230.0	0	N/A	N/A
structural_annotation	UHGV-1509799_26	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1509799_27	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_28	phrog_501	40.6	0.000000000036	head closure Hc1	connector
eggNOG-mapper	UHGV-1509799_28	883077.HMPREF9241_01701	52.4	0.000000533	N/A	N/A
structural_annotation	UHGV-1509799_28	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_30	phrog_123	50.2	0.000000000000051	tail terminator	connector
structural_annotation	UHGV-1509799_30	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_31	phrog_117	62.2	9e-18	major tail protein	tail
UniRef90	UHGV-1509799_31	UniRef90_A0A8D5UII9	143.0	1.1e-39	Tail protein	N/A
eggNOG-mapper	UHGV-1509799_31	157924.Q9F4J6_9CAUD	58.2	0.000000059	N/A	N/A
structural_annotation	UHGV-1509799_31	PF09393,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_32	phrog_1526	43.9	0.0000000000035	N/A	unknown function
PHROG	UHGV-1509799_33	phrog_1686	157.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1509799_33	UniRef90_UPI001D07C786	552.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1509799_33	521095.Apar_0588	197.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1509799_33	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1509799_33	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1509799_33	COG0840	N/A	N/A	Methyl-accepting chemotaxis protein (MCP)	N/A
structural_annotation	UHGV-1509799_33	PF20155,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1509799_34	411461.DORFOR_01176	75.1	0.000000000000731	N/A	N/A
structural_annotation	UHGV-1509799_34	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_35	phrog_538	147.2	1.20512e-43	minor tail protein	tail
UniRef90	UHGV-1509799_35	UniRef90_A0A1C5PP83	168.0	9.80909e-45	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-1509799_35	1111121.HMPREF1247_0853	156.0	1.11e-40	N/A	N/A
structural_annotation	UHGV-1509799_35	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_37	phrog_13141	137.0	1.10001e-40	N/A	unknown function
eggNOG-mapper	UHGV-1509799_37	1280698.AUJS01000007_gene1050	85.1	1.98e-16	N/A	N/A
structural_annotation	UHGV-1509799_37	PF08931,PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-1509799_39	phrog_443	65.7	1.1e-18	holin	lysis
UniRef90	UHGV-1509799_39	UniRef90_UPI000A26D838	78.6	1.13e-17	holin	N/A
eggNOG-mapper	UHGV-1509799_39	553184.ATORI0001_1165	108.0	2.43e-30	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1509799_39	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1509799_39	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1509799_40	K01447	79.0	7.3e-23	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1509799_40	phrog_14048	133.9	1.6e-39	endolysin	lysis
UniRef90	UHGV-1509799_40	UniRef90_B9CLI8	431.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1509799_40	553184.ATORI0001_1164	431.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1509799_40	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1509799_40	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1509799_40	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
structural_annotation	UHGV-1509799_40	PF01510,PF19127,MF_04111,TIGR04035,NF008758,COG5263,COG3023	N/A	N/A	N/A	N/A
UniRef90	UHGV-1509799_42	UniRef90_C8WA89	232.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1509799_42	521095.Apar_0597	232.0	0	sequence-specific DNA binding	N/A
Pfam	UHGV-1509799_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1509799_42	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1509799_42	PF14590,TIGR03070,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-1509799_43	K14059	233.1	0	int; integrase	N/A
PHROG	UHGV-1509799_43	phrog_1	216.8	0	integrase	integration and excision
UniRef90	UHGV-1509799_43	UniRef90_C8WA39	387.0	0	Integrase family protein	N/A
eggNOG-mapper	UHGV-1509799_43	521095.Apar_0546	387.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1509799_43	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1509799_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1509799_43	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1509799_43	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1509799	Yes	30,659	51	89	1