vOTU vOTU-090654

vOTU: vOTU-090654

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-090654
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vOTU-090654
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0120229
Biosample ID	SAMEA103958163
Genome length (bp)	18,912 bps
CheckV completeness	53.75% (Medium-quality)
CDS count	25
CDS density	90.88%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	547	Host agreement	88.48
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	40	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.75)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0120229_1	phrog_10	130.8	1.4e-38	major head protein	head and packaging
UniRef90	UHGV-0120229_1	UniRef90_A0A412ULW9	733.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0120229_1	1211817.CCAT010000053_gene2132	328.0	0	Phage capsid family	N/A
Pfam	UHGV-0120229_1	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0120229_1	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0120229_1	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0120229_1	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0120229_2	phrog_749	53.9	0.000000000000003	N/A	unknown function
UniRef90	UHGV-0120229_2	UniRef90_A0A1G5CMX8	105.0	1.23e-27	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0120229_2	1211817.CCAT010000053_gene2133	58.9	0.000000000584	N/A	N/A
PHROG	UHGV-0120229_3	phrog_19734	75.3	7.3e-22	N/A	unknown function
UniRef90	UHGV-0120229_3	UniRef90_UPI00057FE645	59.3	0.00000000455	phage head closure protein	N/A
eggNOG-mapper	UHGV-0120229_3	86416.Clopa_0343	62.0	0.0000000000824	N/A	N/A
NCBIFam	UHGV-0120229_3	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0120229_3	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0120229_4	879305.HMPREF9290_0134	53.5	0.000000134	N/A	N/A
structural_annotation	UHGV-0120229_4	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0120229_5	UniRef90_UPI000E5564A4	268.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0120229_5	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0120229_5	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0120229_6	phrog_88	74.4	1.6e-21	major tail protein	tail
UniRef90	UHGV-0120229_6	UniRef90_A0A1G5CNS8	152.0	7.2307e-43	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0120229_6	1321782.HMPREF1986_01362	63.2	0.00000000142	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0120229_6	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0120229_6	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0120229_7	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0120229_8	phrog_5218	271.1	0	N/A	unknown function
UniRef90	UHGV-0120229_8	UniRef90_UPI000E474EFE	1519.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0120229_8	908340.HMPREF9406_2570	278.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-0120229_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0120229_8	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0120229_8	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0120229_9	phrog_33	82.7	8.3e-24	distal tail protein Dit	tail
UniRef90	UHGV-0120229_9	UniRef90_A0A1G5CPA2	139.0	1.99e-36	Phage-related protein	N/A
eggNOG-mapper	UHGV-0120229_9	1160721.RBI_I01575	90.9	4.94e-19	Phage tail protein	N/A
COG	UHGV-0120229_9	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0120229_9	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0120229_10	phrog_1067	98.3	2e-29	minor head protein	head and packaging
UniRef90	UHGV-0120229_10	UniRef90_A0A348ZBV6	148.0	2.63e-37	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0120229_10	1462527.CCDM010000003_gene3730	63.2	0.0000000863	gp58-like protein	N/A
Pfam	UHGV-0120229_10	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0120229_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0120229_10	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0120229_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-0120229_11	UniRef90_A0A374N9Y2	209.0	0	N/A	N/A
structural_annotation	UHGV-0120229_11	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
UniRef90	UHGV-0120229_13	UniRef90_A0A374MYZ3	179.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0120229_13	1007096.BAGW01000032_gene1580	87.4	2.12e-21	N/A	N/A
PHROG	UHGV-0120229_14	phrog_881	86.7	1.5e-25	holin	lysis
UniRef90	UHGV-0120229_14	UniRef90_A0A4Q7P349	103.0	7.88e-28	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0120229_14	742740.HMPREF9474_02251	107.0	8.63e-30	Putative phage holin Dp-1	N/A
Pfam	UHGV-0120229_14	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0120229_14	PF16938	N/A	N/A	N/A	N/A
KOfam	UHGV-0120229_15	K01448	57.3	2.5e-16	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0120229_15	phrog_435	77.9	1.8e-22	endolysin	lysis
UniRef90	UHGV-0120229_15	UniRef90_A0A413QH71	417.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0120229_15	1384066.JAGT01000001_gene130	81.3	0.00000000000000474	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0120229_15	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0120229_15	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
KOfam	UHGV-0120229_16	K06223	177.6	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0120229_16	phrog_56	159.6	0	DNA methyltransferase	other
UniRef90	UHGV-0120229_16	UniRef90_A0A1C6HHY1	404.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0120229_16	411902.CLOBOL_03426	229.0	0	COG COG0338 Site-specific DNA methylase	N/A
PADLOC	UHGV-0120229_16	MTase_II_00080	98.2	5.8e-29	Type II methyltransferase	RM
Pfam	UHGV-0120229_16	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0120229_16	COG0338	N/A	N/A	DNA-adenine methylase	N/A
KOfam	UHGV-0120229_17	K07727	78.3	1.8e-22	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-0120229_17	phrog_3	42.9	0.00000000002	transcriptional repressor	transcription regulation
UniRef90	UHGV-0120229_17	UniRef90_A0A413QHG2	183.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0120229_17	411471.SUBVAR_07446	123.0	1.35e-35	helix-turn-helix	N/A
Pfam	UHGV-0120229_17	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0120229_17	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0120229_17	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0120229_24	K22300	54.3	0.0000000000000031	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0120229_24	phrog_8	54.5	0.0000000000000026	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0120229_24	476272.RUMHYD_03552	53.5	0.00000185	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0120229_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0120229_24	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0120229_25	K14059	250.7	0	int; integrase	N/A
PHROG	UHGV-0120229_25	phrog_1	170.8	0	integrase	integration and excision
UniRef90	UHGV-0120229_25	UniRef90_A0A373W1U9	402.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0120229_25	1160721.RBI_I00217	407.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0120229_25	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0120229_25	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-0120229_25	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0120229_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0120229_25	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0120229_25	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0120229	Yes	18,912	39	54	1