vOTU vOTU-091431

vOTU: vOTU-091431

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-091431
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vOTU-091431
Host lineage
Host range breadth
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0418010
Biosample ID	SAMEA3323770
Genome length (bp)	27,989 bps
CheckV completeness	81.65% (Medium-quality)
CDS count	40
CDS density	94.84%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 81.65)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0418010_1	phrog_2699	70.0	2.4e-20	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-0418010_1	1226322.HMPREF1545_00113	184.0	0	Phage Terminase	N/A
COG	UHGV-0418010_1	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
eggNOG-mapper	UHGV-0418010_2	742738.HMPREF9460_02878	53.9	0.0000000053	Cysteine-rich KTR	N/A
Pfam	UHGV-0418010_2	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
PHROG	UHGV-0418010_3	phrog_12	164.6	0	portal protein	head and packaging
UniRef90	UHGV-0418010_3	UniRef90_U2SKC6	531.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0418010_3	1226322.HMPREF1545_00114	531.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0418010_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0418010_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0418010_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0418010_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0418010_4	K06904	150.2	1.68156e-44	N/A	N/A
PHROG	UHGV-0418010_4	phrog_80	167.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0418010_4	UniRef90_A0A1F2PDD9	162.0	0	Caudovirus prohead protease	N/A
eggNOG-mapper	UHGV-0418010_4	638301.HMPREF0444_1507	139.0	5.66e-39	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0418010_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0418010_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0418010_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0418010_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_5	phrog_10	168.7	0	major head protein	head and packaging
UniRef90	UHGV-0418010_5	UniRef90_R5V6C2	470.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0418010_5	1235798.C817_04585	384.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0418010_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0418010_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0418010_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0418010_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_6	phrog_2550	59.9	2.9e-17	N/A	unknown function
UniRef90	UHGV-0418010_6	UniRef90_UPI0008717716	68.9	0.000000000000294	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0418010_6	1226322.HMPREF1545_00117	68.6	0.0000000000000717	N/A	N/A
structural_annotation	UHGV-0418010_6	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_7	phrog_19734	54.6	0.0000000000000021	N/A	unknown function
UniRef90	UHGV-0418010_7	UniRef90_A0A316NL63	107.0	4.75e-28	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0418010_7	908340.HMPREF9406_2575	52.8	0.00000036	N/A	N/A
structural_annotation	UHGV-0418010_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_8	phrog_78	48.7	0.00000000000015	tail terminator	connector
eggNOG-mapper	UHGV-0418010_8	33035.JPJF01000039_gene276	73.2	0.00000000000000208	N/A	N/A
structural_annotation	UHGV-0418010_8	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_9	phrog_5	44.1	0.0000000000044	tail completion or Neck1 protein	connector
UniRef90	UHGV-0418010_9	UniRef90_A0A1C6FG30	159.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0418010_9	908340.HMPREF9406_2573	117.0	2.05e-31	N/A	N/A
structural_annotation	UHGV-0418010_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_10	phrog_88	90.8	1.5e-26	major tail protein	tail
UniRef90	UHGV-0418010_10	UniRef90_G9YSC5	132.0	1.59e-35	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0418010_10	1120945.ATUW01000001_gene1404	60.8	0.00000000834	phage major tail protein, phi13 family	N/A
structural_annotation	UHGV-0418010_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_13	phrog_23464	261.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0418010_13	33035.JPJF01000023_gene3232	335.0	0	phage tail tape measure protein	N/A
COG	UHGV-0418010_13	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0418010_13	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_14	phrog_33	70.1	5.2e-20	distal tail protein Dit	tail
UniRef90	UHGV-0418010_14	UniRef90_A0A173Z1X4	194.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0418010_14	1123263.AUKY01000068_gene490	115.0	1.08e-28	tail component	N/A
COG	UHGV-0418010_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0418010_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_15	phrog_1067	348.6	0	minor head protein	head and packaging
UniRef90	UHGV-0418010_15	UniRef90_UPI00195D4DA4	565.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0418010_15	1123263.AUKY01000068_gene489	367.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0418010_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0418010_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0418010_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0418010_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_16	phrog_3267	317.4	0	tail protein	tail
UniRef90	UHGV-0418010_16	UniRef90_R9C033	392.0	0	YkqB	N/A
eggNOG-mapper	UHGV-0418010_16	207656.S6BUV4_9CAUD	324.0	0	N/A	N/A
structural_annotation	UHGV-0418010_16	PF02010,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_17	phrog_18110	85.9	4.3e-25	N/A	unknown function
UniRef90	UHGV-0418010_17	UniRef90_R5VPB4	71.6	0.00000000000823	Phage minor structural protein N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0418010_17	556261.HMPREF0240_01281	134.0	2.18e-33	cellulase activity	N/A
COG	UHGV-0418010_17	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0418010_18	phrog_372	325.5	0	tail protein	tail
UniRef90	UHGV-0418010_18	UniRef90_UPI0011075AE0	292.0	0	N/A	N/A
eggNOG-mapper	UHGV-0418010_18	658088.HMPREF0987_01104	265.0	0	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-0418010_18	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0418010_18	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0418010_18	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_19	phrog_9589	85.7	1.5e-30	endolysin	lysis
UniRef90	UHGV-0418010_19	UniRef90_UPI000B195CAC	162.0	9.52883e-44	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0418010_19	476272.RUMHYD_00843	146.0	2.89e-36	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0418010_19	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0418010_19	PF09374	N/A	N/A	Predicted Peptidoglycan domain	PG_binding_3
Pfam	UHGV-0418010_19	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0418010_19	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
PHROG	UHGV-0418010_20	phrog_199	75.8	4.8e-22	holin	lysis
UniRef90	UHGV-0418010_20	UniRef90_A0A6S6X9L3	199.0	0	Holin	N/A
eggNOG-mapper	UHGV-0418010_20	483218.BACPEC_01140	162.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0418010_20	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0418010_20	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0418010_20	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0418010_20	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0418010_22	K14059	123.8	2.4e-36	int; integrase	N/A
PHROG	UHGV-0418010_22	phrog_1	137.1	1.7e-40	integrase	integration and excision
UniRef90	UHGV-0418010_22	UniRef90_UPI0006829D64	347.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0418010_22	1235835.C814_03141	291.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0418010_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0418010_22	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0418010_22	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_23	phrog_15667	100.7	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0418010_23	658086.HMPREF0994_06731	84.7	0.00000000000000128	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0418010_23	PF16729	N/A	N/A	N/A	DUF5067
Pfam	UHGV-0418010_23	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0418010_23	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
UniRef90	UHGV-0418010_24	UniRef90_A0A417QE63	244.0	0	N/A	N/A
eggNOG-mapper	UHGV-0418010_24	411489.CLOL250_01506	258.0	0	N/A	N/A
Pfam	UHGV-0418010_24	PF10987	N/A	N/A	N/A	DUF2806
KOfam	UHGV-0418010_25	K01356	152.8	2.8026e-45	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0418010_25	phrog_4	119.3	4.2e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0418010_25	UniRef90_A0A2V2F918	263.0	0	Repressor LexA	N/A
eggNOG-mapper	UHGV-0418010_25	411483.FAEPRAA2165_03041	152.0	1.03696e-43	N/A	N/A
Pfam	UHGV-0418010_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0418010_25	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0418010_25	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0418010_25	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0418010_26	K07729	42.6	0.000000000012	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0418010_26	UniRef90_UPI00174C2CEB	62.0	0.0000000000294	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0418010_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0418010_26	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0418010_26	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0418010_29	UniRef90_UPI000F0633F9	65.5	0.00000000000133	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0418010_29	693746.OBV_43260	61.6	0.00000000000758	N/A	N/A
structural_annotation	UHGV-0418010_29	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0418010_32	phrog_997	108.8	3.7e-32	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0418010_32	UniRef90_R6MCS9	101.0	2.42e-25	N/A	N/A
eggNOG-mapper	UHGV-0418010_32	1519439.JPJG01000059_gene1910	135.0	1.43e-39	N/A	N/A
PHROG	UHGV-0418010_34	phrog_2562	127.4	1.3e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0418010_34	UniRef90_A0A1C6HLK9	145.0	2.11e-38	N/A	N/A
eggNOG-mapper	UHGV-0418010_34	1232449.BAHV02000016_gene1836	103.0	2.42e-23	N/A	N/A
Pfam	UHGV-0418010_34	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0418010_34	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0418010_34	PF14297,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0418010_35	K02314	270.7	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0418010_35	phrog_19	248.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0418010_35	UniRef90_A0A6N8HZR2	335.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0418010_35	693746.OBV_27440	192.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0418010_35	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0418010_35	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0418010_35	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0418010_35	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
UniRef90	UHGV-0418010_40	UniRef90_UPI001C009DC1	64.7	0.0000000021	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0418010	Yes	27,989	50	82	1