vOTU vOTU-092193

vOTU: vOTU-092193

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-092193
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-01732 → vGENUS-16828 → vOTU-092193
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435975
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1335378
Biosample ID	N/A
Genome length (bp)	35,851 bps
CheckV completeness	88.01% (Medium-quality)
CDS count	44
CDS density	91.93%
tRNA count	6
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435975	Total connections	116	Host agreement	73.28
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435975	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 88.01)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1335378_1	K01356	250.1	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1335378_1	phrog_811	76.0	2.8e-22	UmuD-like protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335378_1	UniRef90_R6GMP9	349.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-1335378_1	1226322.HMPREF1545_02699	298.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1335378_1	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
Pfam	UHGV-1335378_1	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
NCBIFam	UHGV-1335378_1	TIGR00498.1	N/A	N/A	transcriptional repressor LexA	N/A
COG	UHGV-1335378_1	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
HAMAP	UHGV-1335378_1	MF_00015	N/A	N/A	LexA repressor [lexA]	N/A
structural_annotation	UHGV-1335378_1	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-1335378_2	K14059	214.0	0	int; integrase	N/A
PHROG	UHGV-1335378_2	phrog_1	184.6	0	integrase	integration and excision
UniRef90	UHGV-1335378_2	UniRef90_UPI0013EF4EFD	408.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1335378_2	1226322.HMPREF1545_00144	399.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1335378_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1335378_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1335378_2	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_3	phrog_4611	53.8	8.6e-16	minor head protein	head and packaging
UniRef90	UHGV-1335378_3	UniRef90_UPI001EDE047F	174.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1335378_3	411902.CLOBOL_02557	118.0	9.18e-28	N/A	N/A
Pfam	UHGV-1335378_3	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-1335378_3	PF06152	N/A	N/A	N/A	N/A
UniRef90	UHGV-1335378_4	UniRef90_UPI00196819D3	55.5	0.000000207	helix-turn-helix domain-containing protein	N/A
COG	UHGV-1335378_4	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
UniRef90	UHGV-1335378_5	UniRef90_A0A3D3Y6C1	63.5	0.0000000000055	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1335378_5	742738.HMPREF9460_04041	52.4	0.0000000303	sequence-specific DNA binding	N/A
Pfam	UHGV-1335378_5	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1335378_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1335378_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1335378_7	UniRef90_UPI001C103C6B	74.3	0.00000000000000105	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1335378_7	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1335378_9	K00390	88.4	7.7e-27	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1335378_9	phrog_424	87.4	1.2e-25	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1335378_9	UniRef90_A0A3R6M557	622.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-1335378_9	1235800.C819_02256	582.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1335378_9	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1335378_9	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1335378_9	PF01507,MF_00063,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_10	phrog_997	104.3	9.9e-31	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335378_10	UniRef90_R6MCS9	109.0	1.07e-28	N/A	N/A
eggNOG-mapper	UHGV-1335378_10	1203606.HMPREF1526_01889	132.0	1.5e-38	replication terminator protein, phage associated	N/A
PHROG	UHGV-1335378_11	phrog_1029	161.2	0	N/A	unknown function
UniRef90	UHGV-1335378_11	UniRef90_H6LCD3	97.1	8.53e-21	Phage-like protein	N/A
eggNOG-mapper	UHGV-1335378_11	552398.HMPREF0866_01625	125.0	2.02e-32	N/A	N/A
structural_annotation	UHGV-1335378_11	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-1335378_12	K03546	61.0	1.3e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1335378_12	phrog_1499	293.7	0	N/A	unknown function
UniRef90	UHGV-1335378_12	UniRef90_A0A1Q6JHZ0	813.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1335378_12	1007096.BAGW01000023_gene155	637.0	0	DNA recombination	N/A
Pfam	UHGV-1335378_12	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1335378_12	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-1335378_12	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_13	phrog_21613	66.4	4.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1335378_13	1007096.BAGW01000023_gene153	132.0	7.59e-36	N/A	N/A
PHROG	UHGV-1335378_14	phrog_1227	223.4	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335378_14	UniRef90_UPI00164E5A62	420.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1335378_14	1007096.BAGW01000023_gene152	400.0	0	N/A	N/A
Pfam	UHGV-1335378_14	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1335378_14	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1335378_14	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-1335378_15	K03111	151.5	8.40779e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1335378_15	phrog_44	149.3	1.96182e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335378_15	UniRef90_A0A1Q6JI74	286.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1335378_15	1007096.BAGW01000023_gene151	203.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1335378_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1335378_15	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1335378_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1335378_15	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1335378_15	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1335378_16	K02316	71.4	1.5e-20	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-1335378_16	phrog_11992	102.0	7.3e-30	N/A	unknown function
UniRef90	UHGV-1335378_16	UniRef90_A0A1Q6JHS4	351.0	0	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-1335378_16	742738.HMPREF9460_02494	152.0	2.38221e-44	CHC2 zinc finger	N/A
PADLOC	UHGV-1335378_16	drt-cluster192	60.7	3.3e-17	DRT	DRT
Pfam	UHGV-1335378_16	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-1335378_16	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1335378_16	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_17	phrog_8841	491.2	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335378_17	UniRef90_UPI00164DBC57	887.0	0	N/A	N/A
eggNOG-mapper	UHGV-1335378_17	742738.HMPREF9460_02495	871.0	0	N/A	N/A
Pfam	UHGV-1335378_17	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-1335378_17	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-1335378_17	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335378_17	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-1335378_18	K17677	392.8	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1335378_18	phrog_16	250.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1335378_18	UniRef90_A0A2U1BEG6	745.0	0	Superfamily II DNA or RNA helicase	N/A
eggNOG-mapper	UHGV-1335378_18	742738.HMPREF9460_02499	720.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1335378_18	mREase_IV_00005	120.6	1.3e-35	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1335378_18	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1335378_18	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1335378_18	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1335378_18	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_19	phrog_824	129.6	1.3e-38	N/A	unknown function
UniRef90	UHGV-1335378_19	UniRef90_A0A1Q6JHZ3	205.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1335378_19	742738.HMPREF9460_02501	162.0	0	VRR_NUC	N/A
Pfam	UHGV-1335378_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1335378_19	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-1335378_21	K00558	221.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1335378_21	phrog_116	259.5	0	DNA methyltransferase	other
UniRef90	UHGV-1335378_21	UniRef90_A0A350THX9	781.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1335378_21	1121334.KB911073_gene1852	691.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1335378_21	MTase_II_00164	99.0	5.1e-34	Type II methyltransferase	RM
Pfam	UHGV-1335378_21	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1335378_21	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1335378_21	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1335378_22	693746.OBV_18010	125.0	1.48e-34	N/A	N/A
structural_annotation	UHGV-1335378_22	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_23	phrog_2412	91.7	7.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-1335378_23	742738.HMPREF9460_02504	143.0	1.47977e-42	N/A	N/A
KOfam	UHGV-1335378_24	K06909	399.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1335378_24	phrog_3717	157.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1335378_24	UniRef90_A0A1Y4ES07	672.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1335378_24	411471.SUBVAR_06507	583.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1335378_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1335378_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1335378_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1335378_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1335378_24	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_26	phrog_533	195.2	0	portal protein	head and packaging
UniRef90	UHGV-1335378_26	UniRef90_UPI000680A1DB	525.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1335378_26	693746.OBV_18040	400.0	0	N/A	N/A
structural_annotation	UHGV-1335378_26	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_27	phrog_581	225.3	0	minor head protein	head and packaging
UniRef90	UHGV-1335378_27	UniRef90_A0A1C6I982	511.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1335378_27	693746.OBV_18050	510.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1335378_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1335378_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1335378_27	PF06152,PF15542	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1335378_28	663278.Ethha_0498	70.5	0.00000000000000235	N/A	N/A
PHROG	UHGV-1335378_29	phrog_194	93.1	3.8e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-1335378_29	UniRef90_UPI00164D9F94	235.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1335378_29	693746.OBV_18080	194.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1335378_29	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1335378_29	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_30	phrog_422	224.0	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1335378_30	693746.OBV_18090	445.0	0	N/A	N/A
structural_annotation	UHGV-1335378_30	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1335378_31	1203606.HMPREF1526_01905	48.1	0.00000402	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-1335378_31	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-1335378_32	phrog_541	70.8	1.8e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-1335378_32	693746.OBV_18110	135.0	5.95e-40	N/A	N/A
structural_annotation	UHGV-1335378_33	PF20536,MF_01370,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_34	phrog_556	53.4	0.0000000000000035	minor head protein	head and packaging
UniRef90	UHGV-1335378_34	UniRef90_UPI0006805998	134.0	2.89e-37	minor capsid protein	N/A
eggNOG-mapper	UHGV-1335378_34	642492.Clole_0824	53.1	0.000000873	Minor capsid protein	N/A
Pfam	UHGV-1335378_34	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1335378_34	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_35	phrog_3266	75.4	6.5e-22	tail completion	connector
eggNOG-mapper	UHGV-1335378_35	693746.OBV_18140	160.0	0	N/A	N/A
structural_annotation	UHGV-1335378_35	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_36	phrog_3099	77.1	2.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1335378_36	1232443.BAIA02000078_gene23	174.0	0	N/A	N/A
structural_annotation	UHGV-1335378_36	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_37	phrog_11299	74.3	1.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-1335378_37	693746.OBV_18160	100.0	2.41e-25	N/A	N/A
structural_annotation	UHGV-1335378_37	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_38	phrog_706	118.3	5.6e-35	N/A	unknown function
UniRef90	UHGV-1335378_38	UniRef90_UPI000682A80B	223.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1335378_38	693746.OBV_18170	220.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1335378_38	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1335378_38	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_39	phrog_1535	257.0	0	tail length tape measure protein	tail
UniRef90	UHGV-1335378_39	UniRef90_R6TDK7	390.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-1335378_39	1226322.HMPREF1545_00059	384.0	0	tape measure	N/A
COG	UHGV-1335378_39	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1335378_39	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_40	phrog_1194	118.5	3e-35	N/A	unknown function
UniRef90	UHGV-1335378_40	UniRef90_A0A4U9RD70	110.0	6.1e-29	Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-1335378_40	469596.HMPREF9488_01317	117.0	2.26e-32	N/A	N/A
Pfam	UHGV-1335378_40	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1335378_40	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_41	phrog_6616	106.3	1.1e-32	tail protein	tail
eggNOG-mapper	UHGV-1335378_41	469596.HMPREF9488_01318	288.0	0	N/A	N/A
structural_annotation	UHGV-1335378_41	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1335378_42	phrog_372	224.5	0	tail protein	tail
UniRef90	UHGV-1335378_42	UniRef90_UPI001373A0FD	241.0	0	N/A	N/A
eggNOG-mapper	UHGV-1335378_42	1235802.C823_05263	211.0	0	N/A	N/A
Pfam	UHGV-1335378_42	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1335378_42	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1335378_42	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1335378	Yes	35,851	56	88	1
UHGV-0192061	No	34,975	56	85	1
UHGV-1519487	No	34,407	56	84	1