vOTU vOTU-092503

vOTU: vOTU-092503

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-092503
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00030 → vGENUS-03960 → vOTU-092503
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0199886
Biosample ID	SAMN05414969
Genome length (bp)	21,060 bps
CheckV completeness	56.07% (Medium-quality)
CDS count	26
CDS density	96.32%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	27	Host agreement	88.89
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	94	Host agreement	97.87

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 56.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0199886_1	K06909	114.7	1e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0199886_1	phrog_10250	104.9	6e-31	N/A	unknown function
UniRef90	UHGV-0199886_1	UniRef90_B0G3C9	652.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0199886_1	411462.DORLON_00796	671.0	0	COG COG1783 Phage terminase large subunit	N/A
Pfam	UHGV-0199886_1	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0199886_1	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0199886_1	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0199886_1	PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_2	phrog_533	430.3	0	portal protein	head and packaging
UniRef90	UHGV-0199886_2	UniRef90_A6BES5	905.0	0	Phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0199886_2	411462.DORLON_00795	905.0	0	COG NOG25118 non supervised orthologous group	N/A
Pfam	UHGV-0199886_2	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0199886_2	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_3	phrog_21033	375.0	0	N/A	unknown function
UniRef90	UHGV-0199886_3	UniRef90_A0A173VG74	1067.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0199886_3	742765.HMPREF9457_02121	768.0	0	N/A	N/A
Pfam	UHGV-0199886_3	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0199886_3	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0199886_3	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_4	phrog_3711	93.3	1.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0199886_4	411462.DORLON_00789	135.0	1.26001e-40	N/A	N/A
PHROG	UHGV-0199886_5	phrog_12728	74.4	3.2e-23	N/A	unknown function
UniRef90	UHGV-0199886_5	UniRef90_A0A516KMW1	89.4	2.08e-21	Putative membrane lipoprotein	N/A
eggNOG-mapper	UHGV-0199886_5	742765.HMPREF9457_02125	157.0	0	N/A	N/A
KOfam	UHGV-0199886_6	K07584	48.7	0.00000000000014	N/A	N/A
PHROG	UHGV-0199886_6	phrog_4478	81.5	6.8e-24	peptidase	other
UniRef90	UHGV-0199886_6	UniRef90_A0A3E5EK56	151.0	0	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0199886_6	411462.DORLON_00788	153.0	0	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0199886_6	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0199886_6	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0199886_6	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_7	phrog_2303	158.5	0	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0199886_7	411462.DORLON_00787	313.0	0	N/A	N/A
AcrCatalog	UHGV-0199886_7	cluster_74817	71.2	1.55e-17	NA	N/A
structural_annotation	UHGV-0199886_7	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_8	phrog_10	173.5	0	major head protein	head and packaging
UniRef90	UHGV-0199886_8	UniRef90_A6BER6	652.0	0	Putative phage capsid family	N/A
eggNOG-mapper	UHGV-0199886_8	411462.DORLON_00786	652.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-0199886_8	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0199886_8	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0199886_8	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0199886_8	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_9	phrog_541	96.7	1.6e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0199886_9	411462.DORLON_00785	262.0	0	N/A	N/A
PHROG	UHGV-0199886_10	phrog_3366	152.5	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0199886_10	411462.DORLON_00784	274.0	0	N/A	N/A
Pfam	UHGV-0199886_10	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0199886_10	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_11	phrog_556	151.0	2.8026e-45	minor head protein	head and packaging
UniRef90	UHGV-0199886_11	UniRef90_UPI00093128B4	188.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0199886_11	411462.DORLON_00783	223.0	0	N/A	N/A
Pfam	UHGV-0199886_11	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0199886_11	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_12	phrog_3266	144.0	4.30199e-43	tail completion	connector
eggNOG-mapper	UHGV-0199886_12	742765.HMPREF9457_02131	241.0	0	N/A	N/A
structural_annotation	UHGV-0199886_12	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_13	phrog_3099	165.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0199886_13	411462.DORLON_00781	287.0	0	N/A	N/A
structural_annotation	UHGV-0199886_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_14	phrog_4450	101.0	8.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-0199886_14	411461.DORFOR_00738	149.0	2.10195e-44	N/A	N/A
Pfam	UHGV-0199886_14	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0199886_14	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_15	phrog_706	165.1	0	N/A	unknown function
UniRef90	UHGV-0199886_15	UniRef90_A0A174JJ83	365.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0199886_15	411462.DORLON_00779	334.0	0	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-0199886_15	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0199886_15	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_16	phrog_58	256.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0199886_16	UniRef90_A0A174JJE7	1220.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0199886_16	742765.HMPREF9457_02136	759.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0199886_16	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0199886_16	PF20155,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0199886_17	UniRef90_UPI00156E3DDD	152.0	3.26993e-41	phage tail protein	N/A
eggNOG-mapper	UHGV-0199886_17	411462.DORLON_00776	485.0	0	N/A	N/A
structural_annotation	UHGV-0199886_17	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_18	phrog_538	194.1	0	minor tail protein	tail
UniRef90	UHGV-0199886_18	UniRef90_UPI001F3E20C1	281.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0199886_18	742765.HMPREF9457_03374	565.0	0	N/A	N/A
Pfam	UHGV-0199886_18	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0199886_18	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_19	phrog_25635	215.8	0	N/A	unknown function
UniRef90	UHGV-0199886_19	UniRef90_A0A6L8RVX5	249.0	0	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0199886_19	411461.DORFOR_00732	258.0	0	N/A	N/A
PHROG	UHGV-0199886_20	phrog_19695	124.2	1.1e-36	N/A	unknown function
eggNOG-mapper	UHGV-0199886_20	411462.DORLON_00772	173.0	0	N/A	N/A
structural_annotation	UHGV-0199886_20	PF19714	N/A	N/A	N/A	N/A
KOfam	UHGV-0199886_21	K21478	77.7	8e-23	icaB; poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase [EC:3.5.1.-]	N/A
UniRef90	UHGV-0199886_21	UniRef90_A0A367G9J3	337.0	0	NodB homology domain-containing protein	N/A
eggNOG-mapper	UHGV-0199886_21	411462.DORLON_00771	285.0	0	N/A	N/A
Pfam	UHGV-0199886_21	PF01522	N/A	N/A	Polysaccharide deacetylase	Polysacc_deac_1
PHROG	UHGV-0199886_22	phrog_1009	43.0	0.0000000000066	N/A	unknown function
UniRef90	UHGV-0199886_22	UniRef90_A0A173RD60	180.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0199886_22	742765.HMPREF9457_03364	175.0	0	N/A	N/A
PHROG	UHGV-0199886_23	phrog_1129	76.5	2.1e-22	holin	lysis
UniRef90	UHGV-0199886_23	UniRef90_UPI001F15FE24	148.0	7.00649e-45	phage holin family protein	N/A
eggNOG-mapper	UHGV-0199886_23	411461.DORFOR_00721	169.0	0	N/A	N/A
Pfam	UHGV-0199886_23	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0199886_23	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0199886_24	K01447	97.6	1.8e-28	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0199886_24	phrog_1493	190.5	0	endolysin	lysis
UniRef90	UHGV-0199886_24	UniRef90_UPI00041018D3	469.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0199886_24	1280698.AUJS01000007_gene1059	469.0	0	Ami_2	N/A
Pfam	UHGV-0199886_24	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0199886_24	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0199886_24	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0199886_24	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0199886_25	phrog_28785	665.7	0	N/A	unknown function
UniRef90	UHGV-0199886_25	UniRef90_A0A6L8RVY1	595.0	0	Carboxypeptidase regulatory-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0199886_25	411462.DORLON_00763	593.0	0	Peptidoglycan binding domain protein	N/A
COG	UHGV-0199886_25	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0199886_25	PF13620,TIGR02870,TIGR04134,COG2351	N/A	N/A	N/A	N/A
UniRef90	UHGV-0199886_26	UniRef90_R7FRM4	817.0	0	TGc domain-containing protein	N/A
eggNOG-mapper	UHGV-0199886_26	411462.DORLON_00762	816.0	0	Transglutaminase-like superfamily	N/A
Pfam	UHGV-0199886_26	PF01841	N/A	N/A	Transglutaminase-like superfamily	Transglut_core
COG	UHGV-0199886_26	COG5279	N/A	N/A	Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0199886	Yes	21,060	42	56	1