vOTU vOTU-092621

vOTU: vOTU-092621

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-092621
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00005 → vOTU-092621
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0022838
Biosample ID	SAMEA4766003
Genome length (bp)	35,496 bps
CheckV completeness	84.31% (Medium-quality)
CDS count	59
CDS density	93.07%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235	Total connections	207	Host agreement	75.36
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → CAG-1024 → CAG-1024 sp000432015	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 84.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0022838_1	K14059	107.7	1.7e-31	int; integrase	N/A
PHROG	UHGV-0022838_1	phrog_1	130.5	1.7e-38	integrase	integration and excision
UniRef90	UHGV-0022838_1	UniRef90_UPI00195CC1EE	348.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0022838_1	537013.CLOSTMETH_02492	110.0	2.69e-25	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0022838_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0022838_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0022838_1	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022838_2	UniRef90_R5HRH2	53.5	0.00000217	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0022838_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022838_2	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0022838_2	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_3	phrog_301	42.9	0.0000000000088	secreted protein	other
eggNOG-mapper	UHGV-0022838_3	1262449.CP6013_2082	176.0	0	N/A	N/A
structural_annotation	UHGV-0022838_3	PF11631,TIGR03066	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022838_4	411459.RUMOBE_00961	55.8	0.0000000353	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0022838_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022838_4	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0022838_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022838_7	UniRef90_N9Z4Q7	55.5	0.00000000991	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0022838_7	1121344.JHZO01000003_gene989	50.8	0.000000389	PFAM helix-turn-helix domain protein	N/A
COG	UHGV-0022838_7	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0022838_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022838_10	UniRef90_UPI000F0633F9	63.2	0.0000000000113	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0022838_10	693746.OBV_43260	68.2	0.0000000000000204	N/A	N/A
structural_annotation	UHGV-0022838_10	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0022838_12	K00571	113.1	3.4e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0022838_12	phrog_67	99.1	2.1e-29	DNA methyltransferase	other
UniRef90	UHGV-0022838_12	UniRef90_A0A1C6E5W1	438.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0022838_12	35241.Q9XJE8_BPTU2	367.0	0	helicase activity	N/A
PADLOC	UHGV-0022838_12	MTase_II_00157	93.2	4e-27	Type II methyltransferase	RM
Pfam	UHGV-0022838_12	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0022838_12	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_13	phrog_22529	90.7	9.6e-27	N/A	unknown function
UniRef90	UHGV-0022838_13	UniRef90_A0A352RPR8	136.0	1.21e-37	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0022838_13	1298920.KI911353_gene568	108.0	5.3e-27	3D domain	N/A
Pfam	UHGV-0022838_13	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0022838_13	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0022838_13	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_15	phrog_862	58.7	1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0022838_15	279238.Saro_3022	132.0	1.15e-35	N/A	N/A
structural_annotation	UHGV-0022838_15	PF05037,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_17	phrog_20437	157.7	0	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022838_17	UniRef90_A0A3A6E2X3	262.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022838_17	445971.ANASTE_00700	164.0	0	N/A	N/A
Pfam	UHGV-0022838_17	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0022838_17	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0022838_17	PF14297	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_18	phrog_9804	47.0	0.0000000000004	N/A	unknown function
UniRef90	UHGV-0022838_18	UniRef90_A0A8D9PDS1	92.4	1.48e-21	Replisome organizer	N/A
eggNOG-mapper	UHGV-0022838_18	1121344.JHZO01000003_gene981	71.6	0.000000000000107	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0022838_18	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0022838_18	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_19	phrog_190	111.1	9e-33	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022838_19	UniRef90_UPI001C0170D2	109.0	1.98e-27	N/A	N/A
eggNOG-mapper	UHGV-0022838_19	1226322.HMPREF1545_00295	124.0	2.84e-34	N/A	N/A
Pfam	UHGV-0022838_19	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0022838_19	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0022838_21	K23779	41.2	4.3e-22	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0022838_21	phrog_8	71.1	1.5e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0022838_21	UniRef90_R7JEQ3	55.1	0.000000436	Transcriptional regulator XRE family	N/A
eggNOG-mapper	UHGV-0022838_21	1168034.FH5T_19800	53.1	0.000000186	transcriptional regulator	N/A
PADLOC	UHGV-0022838_21	retron_type_VI_hth_cluster2_1	45.1	2.1e-17	N/A	Retron
Pfam	UHGV-0022838_21	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0022838_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0022838_21	PF01381,PF13744,NF041951,COG3655,COG2944	N/A	N/A	N/A	N/A
Pfam	UHGV-0022838_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0022838_23	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0022838_23	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_24	phrog_954	203.2	0	DNA methyltransferase	other
UniRef90	UHGV-0022838_24	UniRef90_A0A810Q0N4	333.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0022838_24	1280698.AUJS01000007_gene1028	273.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0022838_24	MTase_II_00074	208.7	0	Type II methyltransferase	RM
Pfam	UHGV-0022838_24	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0022838_24	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0022838_24	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
KOfam	UHGV-0022838_25	K00390	63.8	2.7e-19	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0022838_25	phrog_424	147.3	8.12753e-44	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0022838_25	UniRef90_UPI001D097961	346.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0022838_25	665956.HMPREF1032_00140	265.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0022838_25	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0022838_25	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0022838_25	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_26	phrog_27610	52.3	0.000000000000006	N/A	unknown function
PHROG	UHGV-0022838_28	phrog_38832	73.4	2.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0022838_28	665956.HMPREF1032_00143	68.6	0.00000000000341	N/A	N/A
PHROG	UHGV-0022838_29	phrog_2118	103.5	2.4e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0022838_29	UniRef90_A0A417HX51	210.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0022838_29	742740.HMPREF9474_03129	128.0	7.87e-37	HNH endonuclease	N/A
Pfam	UHGV-0022838_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0022838_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0022838_29	TIGR02646,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0022838_34	K07317	48.9	0.00000000000007	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0022838_34	phrog_21201	70.4	2.1e-20	DNA methyltransferase	other
UniRef90	UHGV-0022838_34	UniRef90_UPI001C033A7E	114.0	6.7e-30	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0022838_34	592010.GCWU000182_001827	81.3	8.41e-17	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
COG	UHGV-0022838_34	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0022838_34	PF20473,NF041658	N/A	N/A	N/A	N/A
UniRef90	UHGV-0022838_35	UniRef90_UPI0018A8F249	189.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0022838_35	1235790.C805_00037	133.0	5.13e-38	N/A	N/A
structural_annotation	UHGV-0022838_35	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0022838_36	K06909	113.8	1.6e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0022838_36	phrog_2	85.4	9.4e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0022838_36	UniRef90_A0A0X8VAD6	453.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0022838_36	1449050.JNLE01000003_gene3895	431.0	0	phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0022838_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0022838_36	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0022838_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0022838_36	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_37	phrog_533	381.6	0	portal protein	head and packaging
UniRef90	UHGV-0022838_37	UniRef90_A0A1C5N775	590.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0022838_37	1226322.HMPREF1545_00044	547.0	0	N/A	N/A
Pfam	UHGV-0022838_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0022838_37	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_39	phrog_9479	175.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0022838_39	1514668.JOOA01000002_gene2680	52.8	0.000000596	N/A	N/A
structural_annotation	UHGV-0022838_39	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_40	phrog_8680	226.0	0	N/A	unknown function
UniRef90	UHGV-0022838_40	UniRef90_A0A3R6D7I3	263.0	0	N/A	N/A
eggNOG-mapper	UHGV-0022838_40	411470.RUMGNA_02208	244.0	0	N/A	N/A
Pfam	UHGV-0022838_40	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0022838_40	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_41	phrog_581	277.9	0	minor head protein	head and packaging
UniRef90	UHGV-0022838_41	UniRef90_UPI001D080D49	550.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0022838_41	1226322.HMPREF1545_00046	348.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0022838_41	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0022838_41	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022838_41	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022838_42	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_43	phrog_544	177.9	0	major head protein	head and packaging
UniRef90	UHGV-0022838_43	UniRef90_A0A810PZM2	723.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0022838_43	1347392.CCEZ01000005_gene1236	273.0	0	N/A	N/A
Pfam	UHGV-0022838_43	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0022838_43	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_44	phrog_541	110.4	9.7e-33	head-tail adaptor	connector
eggNOG-mapper	UHGV-0022838_44	642492.Clole_0822	68.2	0.00000000000101	N/A	N/A
PHROG	UHGV-0022838_45	phrog_3366	89.1	4.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0022838_45	1226322.HMPREF1545_00053	150.0	1.4013e-44	N/A	N/A
structural_annotation	UHGV-0022838_45	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_46	phrog_556	73.0	3.3e-21	minor head protein	head and packaging
UniRef90	UHGV-0022838_46	UniRef90_UPI00195E1497	185.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0022838_46	1226322.HMPREF1545_00054	146.0	2.70451e-43	Minor capsid protein	N/A
Pfam	UHGV-0022838_46	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0022838_46	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_47	phrog_3266	46.4	0.00000000000057	tail completion	connector
eggNOG-mapper	UHGV-0022838_47	1232443.BAIA02000078_gene24	153.0	0	N/A	N/A
structural_annotation	UHGV-0022838_47	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_48	phrog_3099	94.7	1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0022838_48	693746.OBV_18150	231.0	0	N/A	N/A
structural_annotation	UHGV-0022838_48	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_49	phrog_11299	76.8	3.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0022838_49	693746.OBV_18160	180.0	0	N/A	N/A
structural_annotation	UHGV-0022838_49	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_50	phrog_706	110.6	1.2e-32	N/A	unknown function
UniRef90	UHGV-0022838_50	UniRef90_UPI001D069FB9	243.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0022838_50	693746.OBV_18170	181.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0022838_50	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0022838_50	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_51	phrog_17658	62.3	7.6e-18	N/A	unknown function
UniRef90	UHGV-0022838_51	UniRef90_A0A316PG91	85.9	1.1e-16	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0022838_51	768710.DesyoDRAFT_1122	85.5	8.86e-18	N/A	N/A
structural_annotation	UHGV-0022838_51	PF18116,COG3402	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_52	phrog_1535	94.8	2.6e-38	tail length tape measure protein	tail
UniRef90	UHGV-0022838_52	UniRef90_A0A810PX76	97.4	2.93e-17	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0022838_52	693746.OBV_18190	222.0	0	domain protein	N/A
COG	UHGV-0022838_52	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022838_52	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_53	phrog_1194	82.3	4.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0022838_53	1232443.BAIA02000078_gene17	120.0	1.57e-33	N/A	N/A
structural_annotation	UHGV-0022838_53	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0022838_54	phrog_6616	44.7	0.0000000000008	tail protein	tail
UniRef90	UHGV-0022838_54	UniRef90_A0A2Z4QA17	257.0	0	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-0022838_54	1235797.C816_04180	304.0	0	N/A	N/A
structural_annotation	UHGV-0022838_54	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022838_55	1235797.C816_04179	212.0	0	Chaperone of endosialidase	N/A
structural_annotation	UHGV-0022838_55	PF14594	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0022838_56	PF20942,NF041894,COG5456	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022838_58	1235797.C816_04177	96.7	1.31e-17	alginic acid biosynthetic process	N/A
COG	UHGV-0022838_58	COG1511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0022838_59	1384065.JAGS01000001_gene2507	75.5	0.0000000000013	domain, Protein	N/A
NCBIFam	UHGV-0022838_59	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
COG	UHGV-0022838_59	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0022838	Yes	35,496	51	84	1