vOTU vOTU-093545

vOTU: vOTU-093545

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-093545
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-01174 → vGENUS-01697 → vOTU-093545
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0208956
Biosample ID	SAMN10080883
Genome length (bp)	29,977 bps
CheckV completeness	57.43% (Medium-quality)
CDS count	49
CDS density	93.17%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis	Total connections	10	Host agreement	80
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 57.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0208956_1	K02335	70.0	3.3e-20	polA; DNA polymerase I [EC:2.7.7.7]	N/A
PHROG	UHGV-0208956_1	phrog_5995	58.6	1e-16	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208956_1	UniRef90_X1QRL0	53.1	0.00000107	POLAc domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0208956_1	388452.A6MAG1_9CAUD	72.0	0.00000000000033	DNA polymerase family A	N/A
Pfam	UHGV-0208956_1	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
structural_annotation	UHGV-0208956_2	PF18339,NF037951,COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-0208956_3	K16899	55.9	5.2e-16	addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]	N/A
PHROG	UHGV-0208956_3	phrog_1218	120.6	1.2e-35	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208956_3	UniRef90_A0A482MIW4	80.1	0.000000000000258	PD-(D/E)XK nuclease	N/A
Pfam	UHGV-0208956_3	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
structural_annotation	UHGV-0208956_3	PF12705,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_4	phrog_124	84.2	1.8e-24	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208956_4	UniRef90_A0A1L6BY46	103.0	1.12e-22	Nucleotide-binding protein	N/A
Pfam	UHGV-0208956_4	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0208956_4	PF13479,MF_00350,TIGR01618,COG2874	N/A	N/A	N/A	N/A
KOfam	UHGV-0208956_5	K11294	41.1	0.000000000018	NCL, NSR1; nucleolin	N/A
PHROG	UHGV-0208956_5	phrog_3724	73.5	7.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0208956_5	1403819.BATR01000122_gene4276	56.6	0.00000023	N/A	N/A
Pfam	UHGV-0208956_5	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0208956_5	PF05037,MF_00292,NF003080,COG2053	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_6	phrog_4519	84.4	1.1e-24	glycosyltransferase	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0208956_6	PF20691	N/A	N/A	TET-Associated Glycosyltransferase	TAGT
structural_annotation	UHGV-0208956_6	PF20691,MF_01072,TIGR03965,COG1216	N/A	N/A	N/A	N/A
UniRef90	UHGV-0208956_7	UniRef90_A0A6M3L1E8	248.0	0	Putative iron-sulfur cluster-binding domain contining protein	N/A
eggNOG-mapper	UHGV-0208956_7	397291.C804_01174	102.0	1.29e-21	Iron-sulfur cluster-binding domain	N/A
Pfam	UHGV-0208956_7	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
Pfam	UHGV-0208956_7	PF13186	N/A	N/A	Iron-sulfur cluster-binding domain	SPASM
COG	UHGV-0208956_7	COG0535	N/A	N/A	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	N/A
structural_annotation	UHGV-0208956_7	PF04055,MF_00660,TIGR04321,COG0641	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_9	phrog_761	58.8	1.6e-17	thymidylate kinase	other
UniRef90	UHGV-0208956_9	UniRef90_A0A2A5INL2	65.9	0.000000000104	dNK domain-containing protein	N/A
PADLOC	UHGV-0208956_9	VakA	43.0	0.000000000012	N/A	Viperin
Pfam	UHGV-0208956_9	PF02223	N/A	N/A	Thymidylate kinase	Thymidylate_kin
Pfam	UHGV-0208956_9	PF01712	N/A	N/A	Deoxynucleoside kinase	dNK
structural_annotation	UHGV-0208956_9	PF03976,MF_00165,TIGR00041,COG1428	N/A	N/A	N/A	N/A
KOfam	UHGV-0208956_10	K00560	152.6	2.8026e-45	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	N/A
PHROG	UHGV-0208956_10	phrog_5131	181.4	0	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208956_10	UniRef90_A0A4Y5FGW2	177.0	0	Thymidylate synthase	N/A
eggNOG-mapper	UHGV-0208956_10	1207058.L53_12995	150.0	1.23999e-40	Thymidylate synthase	N/A
Pfam	UHGV-0208956_10	PF00303	N/A	N/A	Thymidylate synthase	Thymidylat_synt
COG	UHGV-0208956_10	COG0207	N/A	N/A	Thymidylate synthase	N/A
PHROG	UHGV-0208956_11	phrog_24386	107.5	1.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0208956_11	1280694.AUJQ01000013_gene1409	115.0	2.57e-31	phosphatase activity	N/A
COG	UHGV-0208956_11	COG0561	N/A	N/A	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	N/A
COG	UHGV-0208956_12	COG1591	N/A	N/A	Holliday junction resolvase Hjc, archaeal type	N/A
PHROG	UHGV-0208956_13	phrog_1315	51.4	0.000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0208956_13	1178540.BA70_19260	48.1	0.0000093	N/A	N/A
KOfam	UHGV-0208956_14	K14440	76.6	5.8e-32	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0208956_14	phrog_62	263.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0208956_14	UniRef90_A0A1V5E5D6	279.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0208956_14	887325.HMPREF0381_0366	200.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0208956_14	ZorD1_00007	53.9	0.0000000000000022	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0208956_14	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0208956_14	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0208956_14	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0208956_14	PF00176,PF00271,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208956_17	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_19	phrog_20016	61.8	8.7e-18	N/A	unknown function
UniRef90	UHGV-0208956_19	UniRef90_A0A395WF88	76.3	0.00000000000000403	BclA_C domain-containing protein	N/A
Pfam	UHGV-0208956_19	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-0208956_19	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0208956_20	476272.RUMHYD_01770	87.8	1.59e-18	N/A	N/A
PHROG	UHGV-0208956_22	phrog_21718	41.5	0.000000000016	N/A	unknown function
structural_annotation	UHGV-0208956_24	PF04545,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_26	phrog_937	43.7	0.0000000000023	hemolysin	other
PHROG	UHGV-0208956_27	phrog_297	41.8	0.000000000014	holin	lysis
UniRef90	UHGV-0208956_27	UniRef90_A0A417HS25	113.0	4.07e-31	Phage holin	N/A
eggNOG-mapper	UHGV-0208956_27	1408437.JNJN01000039_gene392	93.2	6.29e-24	COG COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0208956_27	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0208956_27	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0208956_27	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208956_27	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_28	phrog_1220	255.8	0	head protein	head and packaging
UniRef90	UHGV-0208956_28	UniRef90_UPI000C7676C6	201.0	0	methyl-accepting chemotaxis protein	N/A
eggNOG-mapper	UHGV-0208956_28	1033737.CAEV01000028_gene283	206.0	0	N/A	N/A
structural_annotation	UHGV-0208956_28	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_29	phrog_538	241.9	0	minor tail protein	tail
UniRef90	UHGV-0208956_29	UniRef90_UPI00136AC3EA	220.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0208956_29	768704.Desmer_4453	229.0	0	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0208956_29	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0208956_29	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_30	phrog_36410	119.2	1.6e-35	N/A	unknown function
UniRef90	UHGV-0208956_30	UniRef90_A0A7X9C3E1	266.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0208956_30	931626.Awo_c30940	137.0	1.17e-35	Phage tail protein	N/A
Pfam	UHGV-0208956_30	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0208956_30	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0208956_30	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_31	phrog_991	361.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0208956_31	UniRef90_A0A374E9U4	355.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0208956_31	411490.ANACAC_00728	350.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0208956_31	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0208956_31	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0208956_31	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0208956_31	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_32	phrog_6541	58.8	6.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0208956_32	1196322.A370_04057	52.8	0.0000000199	N/A	N/A
PHROG	UHGV-0208956_33	phrog_6280	127.6	6.4e-38	N/A	unknown function
UniRef90	UHGV-0208956_33	UniRef90_UPI001E3BEC7F	117.0	4.2e-31	esterase	N/A
eggNOG-mapper	UHGV-0208956_33	445335.CBN_3078	103.0	2.63e-26	N/A	N/A
PHROG	UHGV-0208956_34	phrog_6686	108.3	4e-32	tail tube protein	tail
UniRef90	UHGV-0208956_34	UniRef90_A0A1C6KI12	152.0	2.42985e-42	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0208956_34	697281.Mahau_0063	58.9	0.0000000439	N/A	N/A
structural_annotation	UHGV-0208956_34	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_35	phrog_7585	83.2	3.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0208956_35	748727.CLJU_c31260	81.3	5.61e-18	N/A	N/A
structural_annotation	UHGV-0208956_35	PF05657,COG5003	N/A	N/A	N/A	N/A
UniRef90	UHGV-0208956_36	UniRef90_UPI00164BA869	74.7	0.00000000000000564	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0208956_36	632292.Calhy_0769	74.7	8.11e-16	Phage virion morphogenesis	N/A
COG	UHGV-0208956_36	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208956_36	PF04883,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0208956_37	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_38	phrog_4020	44.5	0.0000000000023	N/A	unknown function
PHROG	UHGV-0208956_39	phrog_3281	40.5	0.000000000042	endonuclease VII	DNA, RNA and nucleotide metabolism
PHROG	UHGV-0208956_40	phrog_29	256.8	0	major head protein	head and packaging
UniRef90	UHGV-0208956_40	UniRef90_A0A843JL33	402.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0208956_40	1296659.S5MNB6_9CAUD	337.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0208956_40	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0208956_40	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_41	phrog_909	57.7	1.9e-16	major head protein	head and packaging
structural_annotation	UHGV-0208956_41	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_42	phrog_2303	131.4	6.3e-39	head scaffolding protein	head and packaging
UniRef90	UHGV-0208956_42	UniRef90_A0A0Z8CP22	78.2	0.0000000000000382	N/A	N/A
eggNOG-mapper	UHGV-0208956_42	764299.STRIC_2530	82.4	1.73e-16	N/A	N/A
structural_annotation	UHGV-0208956_42	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0208956_45	phrog_1657	194.6	0	head morphogenesis	head and packaging
UniRef90	UHGV-0208956_45	UniRef90_A0A1C6BCQ4	222.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
eggNOG-mapper	UHGV-0208956_45	1121342.AUCO01000012_gene1699	218.0	0	N/A	N/A
NCBIFam	UHGV-0208956_45	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
PHROG	UHGV-0208956_46	phrog_64	125.9	2.3e-37	portal protein	head and packaging
UniRef90	UHGV-0208956_46	UniRef90_UPI0008331C88	451.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0208956_46	1121342.AUCO01000012_gene1700	152.0	1.36e-37	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0208956_46	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0208956_46	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0208956	Yes	29,977	44	57	1