vOTU vOTU-093603

vOTU: vOTU-093603

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-093603
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-04805 → vOTU-093603
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Pseudoruminococcus_A → Pseudoruminococcus_A massiliensis
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0050542
Biosample ID	SAMEA2162844
Genome length (bp)	31,873 bps
CheckV completeness	62.90% (Medium-quality)
CDS count	44
CDS density	88.76%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Pseudoruminococcus_A → Pseudoruminococcus_A massiliensis	Total connections	17	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Pseudoruminococcus_A → Pseudoruminococcus_A massiliensis	Total connections	11	Host agreement	90.91

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 62.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0050542_1	K14059	105.3	1e-30	int; integrase	N/A
PHROG	UHGV-0050542_1	phrog_1	98.5	9.3e-29	integrase	integration and excision
UniRef90	UHGV-0050542_1	UniRef90_R6QPK6	272.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0050542_1	1408823.AXUS01000024_gene2685	84.0	3.22e-16	Arm DNA-binding domain	N/A
Pfam	UHGV-0050542_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
COG	UHGV-0050542_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
KOfam	UHGV-0050542_2	K01494	104.4	1.1e-30	dcd; dCTP deaminase [EC:3.5.4.13]	N/A
PHROG	UHGV-0050542_2	phrog_1663	56.8	2.8e-16	dCTP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050542_2	UniRef90_A0A417C5H5	212.0	0	dUTPase domain-containing protein	N/A
eggNOG-mapper	UHGV-0050542_2	658655.HMPREF0988_01612	210.0	0	dUTPase	N/A
Pfam	UHGV-0050542_2	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0050542_2	COG0717	N/A	N/A	dCTP deaminase	N/A
structural_annotation	UHGV-0050542_2	PF06559,MF_00146,TIGR02274,COG0717	N/A	N/A	N/A	N/A
PHROG	UHGV-0050542_3	phrog_1914	172.2	0	N/A	unknown function
UniRef90	UHGV-0050542_3	UniRef90_A0A373XNL4	209.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0050542_3	1160721.RBI_I01604	167.0	0	N/A	N/A
Pfam	UHGV-0050542_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0050542_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0050542_3	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0050542_4	UniRef90_R6R9C1	304.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0050542_4	718252.FP2_04820	95.9	1.45e-23	Cro/C1-type HTH DNA-binding domain	N/A
COG	UHGV-0050542_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0050542_4	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0050542_5	UniRef90_R6R313	138.0	1.37005e-41	N/A	N/A
eggNOG-mapper	UHGV-0050542_5	293826.Amet_0839	60.1	0.0000000000303	N/A	N/A
structural_annotation	UHGV-0050542_5	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0050542_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0050542_7	phrog_3202	88.4	4.8e-26	N/A	unknown function
UniRef90	UHGV-0050542_7	UniRef90_UPI00129E9890	92.0	1.45e-23	YjzC family protein	N/A
eggNOG-mapper	UHGV-0050542_7	638301.HMPREF0444_1536	89.0	4.83e-23	YjzC-like protein	N/A
Pfam	UHGV-0050542_7	PF14168	N/A	N/A	YjzC-like protein	YjzC
structural_annotation	UHGV-0050542_7	PF14168	N/A	N/A	N/A	N/A
KOfam	UHGV-0050542_13	K10906	90.6	4e-35	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0050542_13	phrog_412	262.3	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050542_13	UniRef90_R7GUS0	262.0	0	N/A	N/A
eggNOG-mapper	UHGV-0050542_13	553220.CAMGR0001_2139	198.0	0	N/A	N/A
Pfam	UHGV-0050542_13	PF12684	N/A	N/A	N/A	DUF3799
structural_annotation	UHGV-0050542_13	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0050542_14	phrog_561	147.3	9.66896e-44	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050542_14	UniRef90_UPI0011C8A287	214.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0050542_14	33035.JPJF01000071_gene4462	197.0	0	N/A	N/A
Pfam	UHGV-0050542_14	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0050542_14	PF03837,TIGR01913	N/A	N/A	N/A	N/A
KOfam	UHGV-0050542_15	K03111	69.3	9.5e-20	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0050542_15	phrog_44	63.6	5.3e-18	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050542_15	UniRef90_A0A1C6FIL5	108.0	1.04e-27	Helix-destabilizing protein	N/A
eggNOG-mapper	UHGV-0050542_15	910314.HMPREF9220_1105	69.3	0.000000000000401	single-stranded DNA binding	N/A
Pfam	UHGV-0050542_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0050542_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0050542_15	PF00436,MF_00984,NF005406,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0050542_16	K02316	77.6	1.8e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0050542_16	phrog_11992	136.1	2.6e-40	N/A	unknown function
UniRef90	UHGV-0050542_16	UniRef90_A0A542ARN3	114.0	3.57e-29	CHC2-type zinc finger protein	N/A
eggNOG-mapper	UHGV-0050542_16	742738.HMPREF9460_01250	95.1	4.59e-22	CHC2 zinc finger	N/A
PADLOC	UHGV-0050542_16	drt-UG29	51.4	0.000000000000011	DRT	DRT
Pfam	UHGV-0050542_16	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0050542_16	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0050542_16	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0050542_17	phrog_8841	491.9	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050542_17	UniRef90_UPI001897B4BF	654.0	0	N/A	N/A
eggNOG-mapper	UHGV-0050542_17	742738.HMPREF9460_02495	593.0	0	N/A	N/A
Pfam	UHGV-0050542_17	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0050542_17	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0050542_17	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0050542_17	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0050542_18	K17677	398.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0050542_18	phrog_16	252.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050542_18	UniRef90_A0A2U1BEG6	669.0	0	Superfamily II DNA or RNA helicase	N/A
eggNOG-mapper	UHGV-0050542_18	742738.HMPREF9460_02499	640.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0050542_18	mREase_IV_00005	119.9	2.2e-35	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0050542_18	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0050542_18	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0050542_18	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0050542_18	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0050542_19	phrog_824	136.2	1.10001e-40	N/A	unknown function
UniRef90	UHGV-0050542_19	UniRef90_UPI000A266FAF	176.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0050542_19	742738.HMPREF9460_02501	124.0	4.02e-35	VRR_NUC	N/A
Pfam	UHGV-0050542_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0050542_19	PF08774	N/A	N/A	N/A	N/A
Pfam	UHGV-0050542_21	PF07638	N/A	N/A	ECF sigma factor	Sigma70_ECF
PHROG	UHGV-0050542_22	phrog_606	50.7	0.000000000000019	terminase small subunit	head and packaging
UniRef90	UHGV-0050542_22	UniRef90_UPI001D08D6B6	115.0	2.68e-29	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0050542_22	1235793.C809_00539	75.1	0.0000000000000198	N/A	N/A
Pfam	UHGV-0050542_22	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0050542_22	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0050542_23	K14060	86.5	3.5e-25	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0050542_23	phrog_125	139.1	1.90002e-41	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0050542_23	UniRef90_A0A3A8UF04	332.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0050542_23	632245.CLP_1531	309.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0050542_23	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0050542_23	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0050542_23	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0050542_24	K19159	64.4	2.1e-18	yefM; antitoxin YefM	N/A
PHROG	UHGV-0050542_24	phrog_10078	48.3	0.00000000000015	N/A	unknown function
UniRef90	UHGV-0050542_24	UniRef90_R6RC28	155.0	0	Antitoxin	N/A
eggNOG-mapper	UHGV-0050542_24	861454.HMPREF9099_00764	120.0	5.27e-35	Antitoxin component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-0050542_24	PF02604	N/A	N/A	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
NCBIFam	UHGV-0050542_24	TIGR01552.1	N/A	N/A	type II toxin-antitoxin system prevent-host-death family antitoxin	N/A
COG	UHGV-0050542_24	COG2161	N/A	N/A	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	N/A
structural_annotation	UHGV-0050542_24	PF02604,NF008499,COG2161	N/A	N/A	N/A	N/A
KOfam	UHGV-0050542_25	K19158	76.5	4.2e-22	yoeB; toxin YoeB [EC:3.1.-.-]	N/A
PHROG	UHGV-0050542_25	phrog_1213	41.0	0.000000000042	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0050542_25	UniRef90_R6QV44	161.0	0	Putative mRNA interferase YoeB	N/A
eggNOG-mapper	UHGV-0050542_25	1408287.AXUR01000003_gene2027	118.0	6.89e-34	addiction module toxin, Txe YoeB family	N/A
Pfam	UHGV-0050542_25	PF06769	N/A	N/A	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
NCBIFam	UHGV-0050542_25	TIGR02116.1	N/A	N/A	Txe/YoeB family addiction module toxin	N/A
COG	UHGV-0050542_25	COG4115	N/A	N/A	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	N/A
structural_annotation	UHGV-0050542_25	PF06769,TIGR02116,COG4115	N/A	N/A	N/A	N/A
PHROG	UHGV-0050542_26	phrog_38	184.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0050542_26	UniRef90_UPI001D063AE7	444.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0050542_26	1121866.AUGK01000003_gene1428	414.0	0	chromosome segregation	N/A
COG	UHGV-0050542_26	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0050542_26	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0050542_28	phrog_64	220.9	0	portal protein	head and packaging
UniRef90	UHGV-0050542_28	UniRef90_UPI001D08734C	392.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0050542_28	1121866.AUGK01000003_gene1429	308.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0050542_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0050542_28	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0050542_29	UniRef90_UPI000E41BB01	83.2	1.46e-16	N/A	N/A
eggNOG-mapper	UHGV-0050542_29	1232453.BAIF02000058_gene1626	83.6	2.16e-17	N/A	N/A
PHROG	UHGV-0050542_30	phrog_909	58.8	9.7e-17	major head protein	head and packaging
eggNOG-mapper	UHGV-0050542_30	1298920.KI911353_gene2661	73.2	0.00000000000000219	N/A	N/A
PHROG	UHGV-0050542_31	phrog_29	224.8	0	major head protein	head and packaging
UniRef90	UHGV-0050542_31	UniRef90_A0A357WU47	402.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0050542_31	1347368.HG964404_gene4993	312.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0050542_31	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0050542_31	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0050542_32	phrog_132	43.0	0.0000000000061	head-tail adaptor	connector
UniRef90	UHGV-0050542_32	UniRef90_A0A374HKI7	134.0	8.79e-39	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0050542_32	1298920.KI911353_gene2658	64.7	0.00000000000359	N/A	N/A
Pfam	UHGV-0050542_32	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0050542_32	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0050542_33	1121866.AUGK01000003_gene1432	81.3	5.73e-18	N/A	N/A
PHROG	UHGV-0050542_34	phrog_5	45.5	0.0000000000015	tail completion or Neck1 protein	connector
UniRef90	UHGV-0050542_34	UniRef90_UPI001BBD4500	109.0	3.62e-27	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0050542_34	397290.C810_01411	101.0	8.07e-25	N/A	N/A
structural_annotation	UHGV-0050542_34	PF17395,TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0050542_35	469596.HMPREF9488_01309	53.5	0.000000294	N/A	N/A
structural_annotation	UHGV-0050542_35	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0050542_36	469596.HMPREF9488_01310	187.0	0	N/A	N/A
structural_annotation	UHGV-0050542_36	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0050542_37	UniRef90_A0A847YX95	122.0	4.83e-34	N/A	N/A
eggNOG-mapper	UHGV-0050542_37	1123263.AUKY01000015_gene1618	78.6	2.25e-17	N/A	N/A
Pfam	UHGV-0050542_37	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0050542_37	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0050542_38	1211844.CBLM010000023_gene987	76.3	1.33e-16	N/A	N/A
eggNOG-mapper	UHGV-0050542_39	1121866.AUGK01000003_gene1437	120.0	2.88e-26	phage tail tape measure protein	N/A
COG	UHGV-0050542_39	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0050542_40	phrog_1535	98.0	2e-34	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0050542_40	1499683.CCFF01000017_gene2923	90.1	0.00000000000000298	phage tail tape measure protein	N/A
COG	UHGV-0050542_40	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-0050542_41	693746.OBV_27580	87.0	5.07e-17	Copper amine oxidase N-terminal domain	N/A
KOfam	UHGV-0050542_43	K07459	75.5	3e-22	ybjD; putative ATP-dependent endonuclease of the OLD family	N/A
PHROG	UHGV-0050542_43	phrog_7507	173.1	0	N/A	unknown function
UniRef90	UHGV-0050542_43	UniRef90_R9JF68	613.0	0	AAA_15 domain-containing protein	N/A
eggNOG-mapper	UHGV-0050542_43	397287.C807_00523	613.0	0	N/A	N/A
PADLOC	UHGV-0050542_43	AAA_15	69.6	7.7e-20	N/A	N/A
Pfam	UHGV-0050542_43	PF13175	N/A	N/A	AAA ATPase domain	AAA_15
COG	UHGV-0050542_43	COG4637	N/A	N/A	Predicted ATPase	N/A
eggNOG-mapper	UHGV-0050542_44	397287.C807_00524	146.0	2.42985e-42	N/A	N/A
Pfam	UHGV-0050542_44	PF14491	N/A	N/A	N/A	DUF4435

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0050542	Yes	31,873	35	63	1