vOTU vOTU-093805

vOTU: vOTU-093805

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-093805
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01317 → vGENUS-01472 → vOTU-093805
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Coprobacillaceae → Erysipelatoclostridium → Erysipelatoclostridium ramosum
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0110778
Biosample ID	SAMEA3708891
Genome length (bp)	30,180 bps
CheckV completeness	84.12% (Medium-quality)
CDS count	56
CDS density	92.12%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Coprobacillaceae → Erysipelatoclostridium → Erysipelatoclostridium ramosum	Total connections	251	Host agreement	99.2
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Coprobacillaceae → Erysipelatoclostridium → Erysipelatoclostridium ramosum	Total connections	44	Host agreement	90.91

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 84.12)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0110778_3	UniRef90_A0A3E3ACS2	163.0	0	DNA-binding protein	N/A
KOfam	UHGV-0110778_6	K00571	122.0	6.8e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0110778_6	phrog_67	92.9	2.7e-29	DNA methyltransferase	other
UniRef90	UHGV-0110778_6	UniRef90_UPI000E4FA7A6	518.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0110778_6	1314.HKU360_01238	361.0	0	DNA modification methylase DNA replication, recombination, and repair	N/A
PADLOC	UHGV-0110778_6	MTase_II_00157	91.8	1.2e-28	Type II methyltransferase	RM
Pfam	UHGV-0110778_6	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0110778_6	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0110778_6	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_8	phrog_59	54.3	0.0000000000000021	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110778_8	UniRef90_G9R0Z0	323.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0110778_8	360911.EAT1b_0007	76.6	0.00000000000000527	NUMOD4 motif	N/A
Pfam	UHGV-0110778_8	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0110778_8	PF13392,PF07453	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_10	phrog_3634	179.5	0	N/A	unknown function
UniRef90	UHGV-0110778_10	UniRef90_A0A3E3AEX0	458.0	0	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0110778_10	1232446.BAIE02000002_gene804	452.0	0	nucleoside 2-deoxyribosyltransferase	N/A
COG	UHGV-0110778_10	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0110778_10	PF13676,MF_03036,TIGR03646,COG4916	N/A	N/A	N/A	N/A
KOfam	UHGV-0110778_11	K04763	77.1	2.9e-22	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0110778_11	phrog_216	123.2	1.7e-36	integrase	integration and excision
UniRef90	UHGV-0110778_11	UniRef90_G9R0Z2	458.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0110778_11	1232446.BAIE02000002_gene805	443.0	0	Integrase	N/A
Pfam	UHGV-0110778_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0110778_11	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0110778_11	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0110778_13	1232446.BAIE02000011_gene1618	213.0	0	N/A	N/A
PHROG	UHGV-0110778_17	phrog_22292	55.7	8.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0110778_17	1232446.BAIE02000002_gene811	176.0	0	N/A	N/A
PHROG	UHGV-0110778_19	phrog_2245	90.5	2e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0110778_19	UniRef90_A0A4U9RLZ8	75.1	0.00000000000000105	N/A	N/A
eggNOG-mapper	UHGV-0110778_19	1232446.BAIE02000002_gene815	171.0	0	N/A	N/A
structural_annotation	UHGV-0110778_19	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_20	phrog_270	101.1	1.1e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110778_20	UniRef90_UPI000497F8A6	377.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0110778_20	1232446.BAIE02000002_gene816	377.0	0	N/A	N/A
structural_annotation	UHGV-0110778_20	PF01978,MF_01909,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0110778_21	K02314	166.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0110778_21	phrog_19	176.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110778_21	UniRef90_G9R103	746.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0110778_21	1232446.BAIE02000002_gene817	742.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0110778_21	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0110778_21	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0110778_21	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0110778_26	PF04545,PF01920,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_27	phrog_119	69.0	6.6e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110778_27	UniRef90_A0A3E3ADS4	224.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0110778_27	1232446.BAIE02000002_gene820	224.0	0	HNH nucleases	N/A
COG	UHGV-0110778_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0110778_29	phrog_361	96.7	2e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0110778_29	UniRef90_A0A3E3ADK1	255.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0110778_29	1232446.BAIE02000002_gene822	255.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0110778_29	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0110778_29	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_30	phrog_9	308.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0110778_30	UniRef90_A0A3E3ADF9	1181.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0110778_30	1232446.BAIE02000002_gene823	1182.0	0	Phage Terminase	N/A
Pfam	UHGV-0110778_30	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0110778_30	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0110778_30	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0110778_30	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_31	phrog_12	165.0	0	portal protein	head and packaging
UniRef90	UHGV-0110778_31	UniRef90_A0A3E3AEZ3	787.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0110778_31	1232446.BAIE02000002_gene824	791.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0110778_31	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0110778_31	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0110778_31	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0110778_31	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0110778_32	K06904	147.5	1.30321e-43	N/A	N/A
PHROG	UHGV-0110778_32	phrog_80	177.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0110778_32	UniRef90_A0A3E3AEE5	388.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0110778_32	1232446.BAIE02000002_gene825	387.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0110778_32	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0110778_32	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0110778_32	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0110778_32	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_33	phrog_10	205.7	0	major head protein	head and packaging
UniRef90	UHGV-0110778_33	UniRef90_A0A3E3ACQ3	785.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0110778_33	1232446.BAIE02000002_gene826	787.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0110778_33	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0110778_33	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0110778_33	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0110778_33	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_34	phrog_2550	85.5	3e-25	N/A	unknown function
UniRef90	UHGV-0110778_34	UniRef90_R5V091	57.0	0.000000011	Phage related protein	N/A
eggNOG-mapper	UHGV-0110778_34	1232446.BAIE02000002_gene827	172.0	0	N/A	N/A
NCBIFam	UHGV-0110778_34	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0110778_34	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_35	phrog_19734	110.3	1.5e-32	N/A	unknown function
UniRef90	UHGV-0110778_35	UniRef90_A0A3E3ACV2	227.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0110778_35	1232446.BAIE02000002_gene828	227.0	0	N/A	N/A
structural_annotation	UHGV-0110778_35	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_36	phrog_78	49.7	0.000000000000069	tail terminator	connector
eggNOG-mapper	UHGV-0110778_36	1232446.BAIE02000002_gene829	217.0	0	N/A	N/A
structural_annotation	UHGV-0110778_36	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0110778_37	UniRef90_R6UNR2	127.0	2.72e-34	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0110778_37	1232446.BAIE02000002_gene830	304.0	0	N/A	N/A
structural_annotation	UHGV-0110778_37	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_38	phrog_88	70.2	3.2e-20	major tail protein	tail
UniRef90	UHGV-0110778_38	UniRef90_A0A3E3ACS6	402.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0110778_38	33035.JPJF01000039_gene278	161.0	0	N/A	N/A
structural_annotation	UHGV-0110778_38	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0110778_39	1235798.C817_04591	54.7	0.000000189	N/A	N/A
PHROG	UHGV-0110778_41	phrog_23464	218.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0110778_41	1232446.BAIE02000002_gene834	797.0	0	tape measure	N/A
COG	UHGV-0110778_41	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0110778_41	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_42	phrog_33	65.4	1.5e-18	distal tail protein Dit	tail
UniRef90	UHGV-0110778_42	UniRef90_A0A3E3AF06	479.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0110778_42	1232446.BAIE02000002_gene835	478.0	0	phage tail	N/A
COG	UHGV-0110778_42	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0110778_42	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_43	phrog_13289	363.3	0	tail protein	tail
UniRef90	UHGV-0110778_43	UniRef90_A0A3E3AEF9	1324.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0110778_43	1232446.BAIE02000002_gene836	1325.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0110778_43	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0110778_43	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0110778_43	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0110778_43	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0110778_43	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0110778_44	999413.HMPREF1094_01998	82.0	6.28e-16	N/A	N/A
KOfam	UHGV-0110778_45	K13276	54.5	1.5e-16	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0110778_45	phrog_11157	202.9	0	N/A	unknown function
UniRef90	UHGV-0110778_45	UniRef90_A0A1Y4N8R1	358.0	0	Big_13 domain-containing protein	N/A
eggNOG-mapper	UHGV-0110778_45	1232446.BAIE02000002_gene839	374.0	0	N/A	N/A
Pfam	UHGV-0110778_45	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0110778_45	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-0110778_45	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0110778_45	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_46	phrog_32322	56.2	5.5e-16	N/A	unknown function
UniRef90	UHGV-0110778_46	UniRef90_A0A7U9CLF4	205.0	0	Ig-like_bact domain-containing protein	N/A
eggNOG-mapper	UHGV-0110778_46	1232446.BAIE02000002_gene840	205.0	0	N/A	N/A
Pfam	UHGV-0110778_46	PF13754	N/A	N/A	N/A	Big_3_4
structural_annotation	UHGV-0110778_46	PF13754	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0110778_47	PF07703,TIGR02657,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_51	phrog_1129	74.2	1.2e-21	holin	lysis
UniRef90	UHGV-0110778_51	UniRef90_A0A0J8Z1S7	150.0	1.4013e-45	Holin protein	N/A
eggNOG-mapper	UHGV-0110778_51	1123075.AUDP01000020_gene1532	104.0	3.61e-28	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0110778_51	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0110778_51	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0110778_52	phrog_4105	89.3	2.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0110778_52	1121105.ATXL01000027_gene760	75.1	0.00000000000000149	N/A	N/A
KOfam	UHGV-0110778_53	K01448	106.6	3e-31	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0110778_53	phrog_435	178.7	0	endolysin	lysis
UniRef90	UHGV-0110778_53	UniRef90_UPI001D075068	505.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0110778_53	411461.DORFOR_01187	211.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0110778_53	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0110778_53	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0110778_53	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0110778_53	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0110778_56	1232446.BAIE02000010_gene1963	71.2	3.14e-16	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0110778	Yes	30,180	35	84	1