vOTU vOTU-093806

vOTU: vOTU-093806

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-093806
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Parasutterella → Parasutterella excrementihominis
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00469 → vGENUS-01003 → vOTU-093806
Host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Parasutterella
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0110777
Biosample ID	SAMEA3708891
Genome length (bp)	37,956 bps
CheckV completeness	85.66% (Medium-quality)
CDS count	50
CDS density	93.56%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Parasutterella	Total connections	104	Host agreement	99.04
PHIST-predicted host lineage	Bacteria → Proteobacteria → Gammaproteobacteria → Burkholderiales → Burkholderiaceae → Parasutterella → Parasutterella excrementihominis	Total connections	16	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 85.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0110777_1	K14059	139.8	3.80004e-41	int; integrase	N/A
PHROG	UHGV-0110777_1	phrog_1	182.1	0	integrase	integration and excision
UniRef90	UHGV-0110777_1	UniRef90_F3QJ78	625.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0110777_1	469610.HMPREF0189_01147	681.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0110777_1	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0110777_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0110777_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0110777_1	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0110777_2	762966.HMPREF9439_00980	157.0	0	N/A	N/A
structural_annotation	UHGV-0110777_2	PF05930,NF033499,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0110777_3	phrog_2245	52.9	0.0000000000000066	nucleoside triphosphate pyrophosphohydrolase	other
PHROG	UHGV-0110777_4	phrog_1485	84.1	1.8e-24	N/A	unknown function
UniRef90	UHGV-0110777_4	UniRef90_UPI0019D50843	138.0	1.41e-40	nucleotide modification associated domain-containing protein	N/A
eggNOG-mapper	UHGV-0110777_4	1444310.JANV01000096_gene3245	80.1	1.07e-17	N/A	N/A
Pfam	UHGV-0110777_4	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
structural_annotation	UHGV-0110777_6	MF_04067	N/A	N/A	N/A	N/A
PHROG	UHGV-0110777_8	phrog_253	91.2	1.3e-26	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110777_8	UniRef90_A0A6J5L191	69.7	0.00000000000591	Siphovirus Gp157	N/A
Pfam	UHGV-0110777_8	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0110777_8	PF05565,NF002139	N/A	N/A	N/A	N/A
KOfam	UHGV-0110777_9	K03111	159.5	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0110777_9	phrog_44	136.4	2e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110777_9	UniRef90_F3QNN6	162.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0110777_9	469610.HMPREF0189_01394	162.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0110777_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0110777_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0110777_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0110777_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0110777_9	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0110777_10	phrog_155	118.4	6.4e-35	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110777_10	UniRef90_A0A6J5P5S3	95.5	9.81e-21	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0110777_10	1207076.ALAT01000105_gene1941	89.0	4.76e-19	ERF superfamily	N/A
Pfam	UHGV-0110777_10	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0110777_10	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
KOfam	UHGV-0110777_14	K07816	131.0	1.3e-38	E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]	N/A
PHROG	UHGV-0110777_14	phrog_4773	365.0	0	N/A	unknown function
UniRef90	UHGV-0110777_14	UniRef90_A0A6L6YI53	559.0	0	(P)ppGpp synthetase	N/A
eggNOG-mapper	UHGV-0110777_14	1029823.AFIE01000022_gene955	317.0	0	Region found in RelA / SpoT proteins	N/A
Pfam	UHGV-0110777_14	PF04607	N/A	N/A	Region found in RelA / SpoT proteins	RelA_SpoT
COG	UHGV-0110777_14	COG2357	N/A	N/A	ppGpp synthetase catalytic domain (RelA/SpoT-type nucleotidyltranferase)	N/A
structural_annotation	UHGV-0110777_14	PF04607,TIGR00691,COG2357	N/A	N/A	N/A	N/A
UniRef90	UHGV-0110777_15	UniRef90_UPI001C3E8E16	288.0	0	restriction endonuclease	N/A
Pfam	UHGV-0110777_15	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0110777_15	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
structural_annotation	UHGV-0110777_15	PF04471,MF_00722,NF002876,COG1787	N/A	N/A	N/A	N/A
KOfam	UHGV-0110777_16	K22300	74.5	1.9e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0110777_16	phrog_4	168.8	0	transcriptional repressor	transcription regulation
UniRef90	UHGV-0110777_16	UniRef90_UPI0006D77E25	149.0	2.68993e-41	LexA family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0110777_16	1121921.KB898706_gene3022	120.0	5.48e-31	Peptidase S24-like	N/A
Pfam	UHGV-0110777_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0110777_16	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0110777_16	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0110777_16	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0110777_17	phrog_35	52.7	0.0000000000000081	transcriptional repressor	transcription regulation
UniRef90	UHGV-0110777_17	UniRef90_UPI0012D931AA	61.2	0.0000000000414	Cro/CI family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0110777_17	1411123.JQNH01000001_gene2299	57.0	0.00000000771	chaperone TorD	N/A
Pfam	UHGV-0110777_17	PF15943	N/A	N/A	Bacterial toxin YdaS	YdaS_toxin
COG	UHGV-0110777_17	COG3381	N/A	N/A	Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation	N/A
structural_annotation	UHGV-0110777_17	PF15943,NF041951,COG4197	N/A	N/A	N/A	N/A
PHROG	UHGV-0110777_19	phrog_1032	56.1	7.8e-16	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0110777_19	469610.HMPREF0189_01095	114.0	5.9e-27	N/A	N/A
Pfam	UHGV-0110777_19	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0110777_19	PF07106,MF_01177,TIGR01610,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0110777_20	K02315	181.1	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0110777_20	phrog_50	176.3	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110777_20	UniRef90_R5E5D4	460.0	0	DNA replication protein DnaC	N/A
eggNOG-mapper	UHGV-0110777_20	469610.HMPREF0189_01096	394.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0110777_20	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0110777_20	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0110777_20	PF01695,MF_01919,NF005931,COG1484	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0110777_21	762966.HMPREF9439_01020	145.0	3.64338e-44	N/A	N/A
PHROG	UHGV-0110777_22	phrog_244	71.3	1.8e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0110777_22	UniRef90_A0A4R3N1W6	75.1	0.00000000000000655	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0110777_22	1468411.X2KTU1_9CAUD	55.1	0.0000000703	N/A	N/A
structural_annotation	UHGV-0110777_22	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0110777_23	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0110777_24	K07474	107.7	2.3e-31	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0110777_24	phrog_51	105.4	6e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0110777_24	UniRef90_UPI0012BCC981	280.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0110777_24	1028806.GGE_2186	91.7	2.67e-21	terminase, small subunit	N/A
Pfam	UHGV-0110777_24	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0110777_24	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0110777_24	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0110777_25	K06909	46.2	0.00000000000057	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0110777_25	phrog_5902	248.0	0	N/A	unknown function
UniRef90	UHGV-0110777_25	UniRef90_UPI0012BCF9F6	1029.0	0	terminase	N/A
eggNOG-mapper	UHGV-0110777_25	665942.HMPREF1022_00139	441.0	0	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	N/A
COG	UHGV-0110777_25	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0110777_25	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0110777_26	UniRef90_UPI0012BC2332	288.0	0	GNAT family N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0110777_26	1072685.IX83_07115	90.9	2.86e-21	Acetyltransferase (GNAT) family	N/A
Pfam	UHGV-0110777_26	PF00583	N/A	N/A	Acetyltransferase (GNAT) family	Acetyltransf_1
COG	UHGV-0110777_26	COG3375	N/A	N/A	Predicted acetyltransferase, GNAT superfamily	N/A
PHROG	UHGV-0110777_28	phrog_332	453.5	0	head-tail adaptor	connector
UniRef90	UHGV-0110777_28	UniRef90_UPI0012BC467D	1082.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0110777_28	557598.LHK_01539	428.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0110777_28	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0110777_28	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0110777_29	phrog_528	44.4	0.0000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0110777_29	585.DR95_530	48.9	0.00000542	N/A	N/A
PHROG	UHGV-0110777_30	phrog_458	134.8	7.4e-40	protease	other
UniRef90	UHGV-0110777_30	UniRef90_A0A6N6L8Z8	107.0	3.19e-25	Protease	N/A
eggNOG-mapper	UHGV-0110777_30	1003200.AXXA_27995	88.2	2e-18	N/A	N/A
PHROG	UHGV-0110777_31	phrog_212	47.2	5.8e-25	major head protein	head and packaging
UniRef90	UHGV-0110777_31	UniRef90_A0A6J5NVU5	110.0	3.2e-24	Major capsid protein	N/A
eggNOG-mapper	UHGV-0110777_31	82995.CR62_16685	108.0	2.41e-24	N/A	N/A
Pfam	UHGV-0110777_31	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0110777_31	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0110777_32	phrog_427	54.8	0.0000000000000015	N/A	unknown function
Pfam	UHGV-0110777_32	PF21190	N/A	N/A	Bbp16	Bbp16
structural_annotation	UHGV-0110777_32	PF21190,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0110777_33	phrog_394	122.0	3.9e-36	tail protein	tail
eggNOG-mapper	UHGV-0110777_33	557598.LHK_01545	121.0	7.15e-32	N/A	N/A
structural_annotation	UHGV-0110777_33	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0110777_34	phrog_376	439.8	0	tail protein	tail
UniRef90	UHGV-0110777_34	UniRef90_A0A6F8VDG3	607.0	0	N/A	N/A
eggNOG-mapper	UHGV-0110777_34	557598.LHK_01546	716.0	0	N/A	N/A
structural_annotation	UHGV-0110777_34	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0110777_35	phrog_418	43.5	0.0000000000045	internal virion protein	head and packaging
UniRef90	UHGV-0110777_35	UniRef90_A0A106BIX2	79.3	0.0000000000000142	N/A	N/A
eggNOG-mapper	UHGV-0110777_35	194699.Q775D2_BPBPP	72.4	0.00000000000222	N/A	N/A
structural_annotation	UHGV-0110777_35	PF07321,COG5034	N/A	N/A	N/A	N/A
PHROG	UHGV-0110777_36	phrog_9880	222.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0110777_36	885272.JonanDRAFT_0164	191.0	0	N/A	N/A
Pfam	UHGV-0110777_36	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
PHROG	UHGV-0110777_37	phrog_684	599.1	0	virion structural protein	head and packaging
UniRef90	UHGV-0110777_37	UniRef90_A0A6P2EJ50	399.0	0	Structural protein	N/A
eggNOG-mapper	UHGV-0110777_37	1157708.KB907450_gene5438	392.0	0	N/A	N/A
KOfam	UHGV-0110777_38	K03988	44.0	0.0000000000027	C1QG; complement C1q subcomponent subunit C	N/A
PHROG	UHGV-0110777_38	phrog_1640	43.2	0.0000000000061	tail protein	tail
Pfam	UHGV-0110777_38	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0110777_38	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-0110777_39	phrog_5073	57.4	2.2e-16	tail fiber protein	tail
eggNOG-mapper	UHGV-0110777_39	563192.HMPREF0179_03429	57.4	0.00000108	domain, Protein	N/A
Pfam	UHGV-0110777_39	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0110777_39	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0110777_40	phrog_4912	120.1	2.29953e-42	tail fiber assembly	tail
UniRef90	UHGV-0110777_40	UniRef90_UPI001F4F2EB0	228.0	0	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0110777_40	762966.HMPREF9439_01057	207.0	0	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-0110777_40	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0110777_40	PF16778	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0110777_41	469610.HMPREF0189_02346	61.2	0.000000000221	N/A	N/A
structural_annotation	UHGV-0110777_41	PF17065	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0110777_42	PF05899,MF_01537,NF007875,COG3123	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0110777_43	PF17065	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0110777_44	PF05899,MF_01537,NF007875,COG3123	N/A	N/A	N/A	N/A
Pfam	UHGV-0110777_45	PF16083	N/A	N/A	LydA holin phage, holin superfamily III	Phage_holin_3_3
KOfam	UHGV-0110777_47	K01185	147.6	1.09301e-43	E3.2.1.17; lysozyme [EC:3.2.1.17]	N/A
PHROG	UHGV-0110777_47	phrog_7	146.8	1.79366e-43	endolysin	lysis
UniRef90	UHGV-0110777_47	UniRef90_D9Y906	290.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0110777_47	469610.HMPREF0189_02350	290.0	0	Phage lysozyme	N/A
Pfam	UHGV-0110777_47	PF00959	N/A	N/A	Phage lysozyme	Phage_lysozyme
COG	UHGV-0110777_47	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
HAMAP	UHGV-0110777_47	MF_04110	N/A	N/A	Endolysin	N/A
structural_annotation	UHGV-0110777_47	PF00959,MF_04110,COG3772	N/A	N/A	N/A	N/A
UniRef90	UHGV-0110777_50	UniRef90_A0A1J0DF30	254.0	0	3-deoxy-D-manno-octulosonic acid transferase	N/A
eggNOG-mapper	UHGV-0110777_50	367737.Abu_1708	218.0	0	N/A	N/A
Pfam	UHGV-0110777_50	PF12686	N/A	N/A	N/A	DUF3800

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0110777	Yes	37,956	48	86	1