vOTU vOTU-093999

vOTU: vOTU-093999

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-093999
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00052 → vSUBFAM-04963 → vGENUS-09737 → vOTU-093999
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Ligilactobacillus → Ligilactobacillus ruminis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0387619
Biosample ID	N/A
Genome length (bp)	30,106 bps
CheckV completeness	70.47% (Medium-quality)
CDS count	40
CDS density	94.55%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Ligilactobacillus → Ligilactobacillus ruminis	Total connections	105	Host agreement	98.1
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 70.47)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0387619_5	K02315	117.0	1.8e-34	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0387619_5	phrog_50	134.7	6.89999e-40	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387619_5	UniRef90_A0A0G8G9C5	464.0	0	DNA replication protein	N/A
eggNOG-mapper	UHGV-0387619_5	1423724.BAMM01000012_gene1381	159.0	4.2039e-45	IstB-like ATP binding protein	N/A
Pfam	UHGV-0387619_5	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0387619_5	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0387619_5	PF01695,MF_01509,NF005304,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0387619_6	K02086	43.6	0.0000000000023	dnaD; DNA replication protein	N/A
PHROG	UHGV-0387619_6	phrog_11233	151.3	5.60519e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387619_6	UniRef90_A0A0G8G8Q1	516.0	0	DnaB_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0387619_6	1399942.U3PDU2_9CAUD	158.0	3.22299e-44	calcium ion binding	N/A
Pfam	UHGV-0387619_6	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0387619_6	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0387619_6	PF13463,TIGR01889,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_7	phrog_7566	60.8	2.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0387619_7	508419.F8J187_9CAUD	59.7	0.000000000204	N/A	N/A
PHROG	UHGV-0387619_8	phrog_72	56.1	6.3e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0387619_8	626523.GCWU000342_01037	76.6	0.00000000000000167	N/A	N/A
structural_annotation	UHGV-0387619_8	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0387619_9	K03111	122.8	4.2e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0387619_9	phrog_44	127.3	2.2e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387619_9	UniRef90_A0A0G8G9D0	211.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0387619_9	714313.LSA_00080	124.0	8.24e-34	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0387619_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0387619_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0387619_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0387619_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0387619_9	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_10	phrog_674	194.6	0	N/A	unknown function
UniRef90	UHGV-0387619_10	UniRef90_A0A8B2Z4L0	345.0	0	N/A	N/A
eggNOG-mapper	UHGV-0387619_10	257314.LJ_1450	89.4	8.67e-18	N/A	N/A
Pfam	UHGV-0387619_10	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0387619_10	PF07083	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0387619_11	908340.HMPREF9406_0152	165.0	0	N/A	N/A
PHROG	UHGV-0387619_13	phrog_22183	45.4	0.0000000000012	N/A	unknown function
UniRef90	UHGV-0387619_13	UniRef90_A0A837ITW8	118.0	1.98e-33	Phage-associated protein	N/A
structural_annotation	UHGV-0387619_14	PF19157	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_15	phrog_23441	42.6	0.000000000007	N/A	unknown function
PHROG	UHGV-0387619_17	phrog_823	79.9	2.3e-23	N/A	unknown function
UniRef90	UHGV-0387619_17	UniRef90_UPI00062CB855	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-0387619_17	1069534.LRC_07140	120.0	4.75e-34	N/A	N/A
Pfam	UHGV-0387619_17	PF05595	N/A	N/A	N/A	DUF771
structural_annotation	UHGV-0387619_17	PF05595,COG4707	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0387619_18	cluster_73533	100.0	8.42e-32	NA	N/A
UniRef90	UHGV-0387619_19	UniRef90_A0A0G8G8U3	153.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0387619_19	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0387619_19	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0387619_20	K01356	143.2	2.59941e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0387619_20	phrog_4	123.1	2.7e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-0387619_20	UniRef90_A0A0G8G9D9	344.0	0	Putative Xre family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0387619_20	1423806.JCM15457_1086	166.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0387619_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0387619_20	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0387619_20	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0387619_20	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_21	phrog_806	76.8	2.5e-22	N/A	unknown function
UniRef90	UHGV-0387619_21	UniRef90_UPI0010A35C3B	147.0	2.78004e-41	N/A	N/A
eggNOG-mapper	UHGV-0387619_21	1300150.EMQU_2343	101.0	4.87e-24	N/A	N/A
structural_annotation	UHGV-0387619_21	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0387619_22	K14059	221.3	0	int; integrase	N/A
PHROG	UHGV-0387619_22	phrog_1	213.5	0	integrase	integration and excision
UniRef90	UHGV-0387619_22	UniRef90_A0A837DVP0	630.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0387619_22	1605.Lani381_0421	352.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0387619_22	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0387619_22	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0387619_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0387619_22	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0387619_22	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0387619_23	K22409	110.2	2.7e-32	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0387619_23	phrog_291	262.5	0	endolysin	lysis
UniRef90	UHGV-0387619_23	UniRef90_A0A0G8G8P2	661.0	0	Phage lysin	N/A
eggNOG-mapper	UHGV-0387619_23	1605.Lani381_1098	446.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0387619_23	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0387619_23	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0387619_23	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0387619_23	PF01476,PF18697,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_24	phrog_199	65.6	5.8e-19	holin	lysis
UniRef90	UHGV-0387619_24	UniRef90_A0A0G8G991	205.0	0	Phage related holin	N/A
eggNOG-mapper	UHGV-0387619_24	1069534.LRC_07420	188.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0387619_24	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0387619_24	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0387619_24	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0387619_24	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_26	phrog_17369	107.5	5.7e-32	N/A	unknown function
eggNOG-mapper	UHGV-0387619_26	1069534.LRC_07390	93.6	1.46e-23	N/A	N/A
KOfam	UHGV-0387619_27	K03529	46.5	0.00000000000022	smc; chromosome segregation protein	N/A
PHROG	UHGV-0387619_27	phrog_1330	261.7	0	tail protein	tail
UniRef90	UHGV-0387619_27	UniRef90_A0A0G8G8L9	619.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0387619_27	1231377.C426_2223	291.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0387619_27	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0387619_27	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0387619_27	PF07902	N/A	N/A	gp58-like protein	Gp58
NCBIFam	UHGV-0387619_27	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0387619_27	COG0845	N/A	N/A	Multidrug efflux pump subunit AcrA (membrane-fusion protein)	N/A
structural_annotation	UHGV-0387619_27	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_28	phrog_33	71.2	2.2e-20	distal tail protein Dit	tail
UniRef90	UHGV-0387619_28	UniRef90_A0A0R1T8W7	158.0	8.40779e-45	N/A	N/A
eggNOG-mapper	UHGV-0387619_28	908337.HMPREF9257_0528	95.1	7.06e-21	phage tail	N/A
COG	UHGV-0387619_28	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0387619_28	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0387619_29	K20478	47.0	0.00000000000003	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0387619_29	phrog_1293	1071.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0387619_29	UniRef90_A0A7H9EIX9	677.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0387619_29	1423816.BACQ01000026_gene933	546.0	0	Phage tail tape measure protein TP901	N/A
Pfam	UHGV-0387619_29	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0387619_29	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0387619_29	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0387619_29	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_30	phrog_187	63.3	2.9e-18	head-tail adaptor	connector
PHROG	UHGV-0387619_31	phrog_88	121.6	5.4e-36	major tail protein	tail
UniRef90	UHGV-0387619_31	UniRef90_V7HVG2	231.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-0387619_31	1122147.AUEH01000027_gene2740	164.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0387619_31	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0387619_31	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0387619_31	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_32	phrog_78	55.7	9.1e-16	tail terminator	connector
UniRef90	UHGV-0387619_32	UniRef90_A0A0E2BLI0	72.8	0.0000000000000478	Putative phage protein	N/A
eggNOG-mapper	UHGV-0387619_32	1423816.BACQ01000026_gene938	73.9	0.00000000000000284	N/A	N/A
structural_annotation	UHGV-0387619_32	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0387619_33	UniRef90_V7HUI7	115.0	1.77e-30	Gp9 protein	N/A
eggNOG-mapper	UHGV-0387619_33	1423816.BACQ01000026_gene939	108.0	3.42e-28	N/A	N/A
structural_annotation	UHGV-0387619_33	PF04883,TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0387619_34	UniRef90_V7HX72	130.0	9.3e-37	Gp8 protein	N/A
eggNOG-mapper	UHGV-0387619_34	1423732.BALS01000095_gene1462	99.0	4.11e-25	N/A	N/A
structural_annotation	UHGV-0387619_34	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_35	phrog_749	74.5	1e-21	N/A	unknown function
UniRef90	UHGV-0387619_35	UniRef90_A0A2G4RJB6	112.0	2.43e-30	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0387619_35	1035189.HMPREF9954_1935	52.4	0.000000141	N/A	N/A
Pfam	UHGV-0387619_35	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
PHROG	UHGV-0387619_36	phrog_10	140.8	1.10002e-41	major head protein	head and packaging
UniRef90	UHGV-0387619_36	UniRef90_V7HVG4	499.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-0387619_36	1423816.BACQ01000026_gene942	369.0	0	Phage capsid family	N/A
Pfam	UHGV-0387619_36	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0387619_36	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0387619_36	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0387619_36	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0387619_37	K01358	117.4	1.7e-34	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0387619_37	phrog_94	191.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0387619_37	UniRef90_UPI001866C65A	200.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0387619_37	1033738.CAEP01000167_gene3589	166.0	0	Serine dehydrogenase proteinase	N/A
Pfam	UHGV-0387619_37	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0387619_37	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0387619_37	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_38	phrog_12	142.8	1.80067e-42	portal protein	head and packaging
UniRef90	UHGV-0387619_38	UniRef90_A0A2G4RJA7	405.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0387619_38	1497679.EP56_02230	291.0	0	Phage portal protein	N/A
Pfam	UHGV-0387619_38	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0387619_38	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0387619_38	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0387619_38	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_39	phrog_9	304.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0387619_39	UniRef90_A0A2G4RJB0	831.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0387619_39	935836.JAEL01000005_gene2705	654.0	0	Terminase	N/A
Pfam	UHGV-0387619_39	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0387619_39	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0387619_39	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0387619_39	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0387619_40	phrog_2343	58.7	6.7e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0387619_40	UniRef90_UPI0010388BB8	86.7	4.59e-20	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0387619_40	1122147.AUEH01000027_gene2749	56.2	0.00000000727	N/A	N/A
structural_annotation	UHGV-0387619_40	PF05119,TIGR01558	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0387619	Yes	30,106	44	70	1