vOTU vOTU-094212

vOTU: vOTU-094212

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-094212
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-00408 → vOTU-094212
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0041875
Biosample ID	SAMEA2042569
Genome length (bp)	20,678 bps
CheckV completeness	50.39% (Medium-quality)
CDS count	33
CDS density	92.62%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	128	Host agreement	97.66
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	191	Host agreement	96.86

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 50.39)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0041875_8	phrog_4583	41.4	0.000000000022	transcriptional repressor	transcription regulation
UniRef90	UHGV-0041875_8	UniRef90_UPI000A0213FB	81.3	1e-18	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0041875_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0041875_8	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0041875_8	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0041875_9	UniRef90_A0A6N8H2D7	87.4	2.43e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0041875_9	1121423.JONT01000002_gene2373	51.2	0.000000195	N/A	N/A
structural_annotation	UHGV-0041875_9	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0041875_10	K01356	164.6	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0041875_10	phrog_4	128.4	6.9e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-0041875_10	UniRef90_A0A6N8H052	254.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0041875_10	718252.FP2_25580	246.0	0	N/A	N/A
Pfam	UHGV-0041875_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0041875_10	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
NCBIFam	UHGV-0041875_10	TIGR00498.1	N/A	N/A	transcriptional repressor LexA	N/A
COG	UHGV-0041875_10	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0041875_10	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0041875_11	K02342	199.8	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0041875_11	phrog_192	157.4	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0041875_11	UniRef90_A0A0U5NNK7	171.0	1.42932e-43	DNA polymerase III PolC-type	N/A
eggNOG-mapper	UHGV-0041875_11	1042156.CXIVA_07100	169.0	1.86373e-43	EXOIII	N/A
PADLOC	UHGV-0041875_11	cd06127	129.0	4.3e-38	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0041875_11	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0041875_11	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0041875_11	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
UniRef90	UHGV-0041875_12	UniRef90_A0A3A6E8N9	536.0	0	Cell filamentation protein Fic	N/A
eggNOG-mapper	UHGV-0041875_12	1035196.HMPREF9998_00638	498.0	0	Virulence protein RhuM family	N/A
Pfam	UHGV-0041875_12	PF13310	N/A	N/A	Virulence protein RhuM family	Virulence_RhuM
COG	UHGV-0041875_12	COG3943	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0041875_12	PF13310,TIGR02681,COG3943	N/A	N/A	N/A	N/A
KOfam	UHGV-0041875_13	K06400	362.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0041875_13	phrog_95	370.0	0	integrase	integration and excision
UniRef90	UHGV-0041875_13	UniRef90_UPI001D0F283A	618.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0041875_13	718252.FP2_01160	595.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0041875_13	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0041875_13	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0041875_13	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0041875_13	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0041875_13	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0041875_14	phrog_1129	63.6	2.4e-18	holin	lysis
UniRef90	UHGV-0041875_14	UniRef90_A0A367FT42	176.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0041875_14	1007096.BAGW01000036_gene2663	116.0	8.19e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0041875_14	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0041875_14	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0041875_15	phrog_1863	69.9	2.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0041875_15	665956.HMPREF1032_03922	108.0	7.69e-30	N/A	N/A
PHROG	UHGV-0041875_16	phrog_355	59.1	7.9e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0041875_16	UniRef90_UPI00156F0E9C	135.0	2.12e-39	N/A	N/A
eggNOG-mapper	UHGV-0041875_16	411473.RUMCAL_00360	125.0	1.91e-36	N/A	N/A
Pfam	UHGV-0041875_16	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0041875_16	PF14359,COG3613	N/A	N/A	N/A	N/A
COG	UHGV-0041875_17	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
KOfam	UHGV-0041875_18	K19304	111.7	8.5e-33	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0041875_18	phrog_3084	92.7	4.5e-27	endolysin	lysis
UniRef90	UHGV-0041875_18	UniRef90_A0A367G061	503.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0041875_18	411471.SUBVAR_06927	133.0	1.75e-33	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0041875_18	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0041875_18	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0041875_18	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
PHROG	UHGV-0041875_19	phrog_24267	54.9	0.000000000000002	N/A	unknown function
UniRef90	UHGV-0041875_19	UniRef90_G4Q8U0	65.9	0.00000000306	Side tail fiber protein from lambdoid prophage Rac	N/A
eggNOG-mapper	UHGV-0041875_19	742742.HMPREF9452_00376	112.0	1.41e-28	tail collar domain protein	N/A
COG	UHGV-0041875_19	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0041875_20	phrog_19111	48.9	0.000000000000038	N/A	unknown function
eggNOG-mapper	UHGV-0041875_20	1232443.BAIA02000078_gene14	72.8	0.00000000000523	nuclear chromosome segregation	N/A
COG	UHGV-0041875_20	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0041875_22	phrog_13589	184.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0041875_22	742733.HMPREF9469_05009	228.0	0	N/A	N/A
eggNOG-mapper	UHGV-0041875_23	428125.CLOLEP_01433	53.9	0.0000000259	N/A	N/A
structural_annotation	UHGV-0041875_24	PF12245	N/A	N/A	N/A	N/A
PHROG	UHGV-0041875_26	phrog_18444	78.9	4e-23	N/A	unknown function
UniRef90	UHGV-0041875_26	UniRef90_UPI00156E9A45	56.6	0.00000000292	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0041875_26	1294142.CINTURNW_1707	55.8	0.000000000987	N/A	N/A
PHROG	UHGV-0041875_27	phrog_18190	91.6	1.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-0041875_27	411471.SUBVAR_06932	313.0	0	N/A	N/A
structural_annotation	UHGV-0041875_27	PF05954,PF00629,PF03424,NF033848,NF033675,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0041875_28	phrog_1194	42.4	0.0000000000095	N/A	unknown function
eggNOG-mapper	UHGV-0041875_28	411471.SUBVAR_06933	101.0	6.23e-26	N/A	N/A
structural_annotation	UHGV-0041875_28	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0041875_29	phrog_6900	262.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0041875_29	UniRef90_A0A1C5MMN2	393.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0041875_29	1280698.AUJS01000007_gene1047	387.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0041875_29	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0041875_29	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0041875_30	phrog_1633	70.3	1.5e-20	N/A	unknown function
UniRef90	UHGV-0041875_30	UniRef90_UPI000986795C	72.4	0.0000000000000506	N/A	N/A
eggNOG-mapper	UHGV-0041875_30	883110.HMPREF9260_00651	66.6	0.00000000000151	N/A	N/A
structural_annotation	UHGV-0041875_30	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0041875_31	phrog_1526	82.0	5.9e-24	N/A	unknown function
UniRef90	UHGV-0041875_31	UniRef90_D2BQF7	68.2	0.000000000000428	N/A	N/A
eggNOG-mapper	UHGV-0041875_31	879308.HMPREF9130_1240	80.9	8.75e-19	N/A	N/A
PHROG	UHGV-0041875_32	phrog_117	175.5	0	major tail protein	tail
UniRef90	UHGV-0041875_32	UniRef90_A0A1Q6T308	231.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0041875_32	748224.HMPREF9436_00696	214.0	0	domain, Protein	N/A
COG	UHGV-0041875_32	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0041875_32	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0041875	Yes	20,678	55	50	1