vOTU vOTU-094435

vOTU: vOTU-094435

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-094435
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00126 → vGENUS-00474 → vOTU-094435
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0029985
Biosample ID	SAMEA4766366
Genome length (bp)	44,119 bps
CheckV completeness	82.50% (Medium-quality)
CDS count	66
CDS density	84.68%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	346	Host agreement	77.46
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	3	Host agreement	66.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0029985_1	phrog_4433	201.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0029985_1	665950.HMPREF1025_01373	160.0	0	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0029985_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0029985_3	phrog_9958	90.9	1.1e-26	N/A	unknown function
UniRef90	UHGV-0029985_3	UniRef90_A0A4Q5C6P1	102.0	8.11e-24	N/A	N/A
eggNOG-mapper	UHGV-0029985_3	658655.HMPREF0988_00874	141.0	1.51e-39	N/A	N/A
Pfam	UHGV-0029985_3	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0029985_3	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_5	phrog_10469	96.8	6.7e-33	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029985_5	UniRef90_A0A174WT25	124.0	1.11e-30	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-0029985_5	742733.HMPREF9469_01845	120.0	1.91e-30	N/A	N/A
structural_annotation	UHGV-0029985_5	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0029985_6	K01160	50.4	0.000000000000057	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0029985_6	phrog_1682	82.8	4.5e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029985_6	UniRef90_A0A1C5MBR6	168.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0029985_6	1235790.C805_00029	134.0	3.36e-39	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0029985_6	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0029985_6	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_8	phrog_72	58.3	1.2e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029985_8	UniRef90_A0A285PU94	130.0	8.58e-35	Recombinase NinB	N/A
eggNOG-mapper	UHGV-0029985_8	411490.ANACAC_00804	236.0	0	N/A	N/A
structural_annotation	UHGV-0029985_8	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_9	phrog_155	139.9	1.6e-41	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029985_9	UniRef90_UPI001EDDFED5	202.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0029985_9	386415.NT01CX_2192	143.0	4.1e-40	ERF superfamily	N/A
Pfam	UHGV-0029985_9	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0029985_9	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_10	phrog_674	170.5	0	N/A	unknown function
UniRef90	UHGV-0029985_10	UniRef90_A0A415UM66	307.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029985_10	411460.RUMTOR_02065	183.0	0	N/A	N/A
Pfam	UHGV-0029985_10	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0029985_10	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029985_12	PF17981,COG4847	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0029985_14	760568.Desku_0919	93.2	1.38e-20	N/A	N/A
structural_annotation	UHGV-0029985_14	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0029985_20	K07729	54.4	0.0000000000000025	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0029985_20	phrog_8	54.5	0.0000000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0029985_20	UniRef90_A0A6L8T004	131.0	2.69e-37	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0029985_20	431943.CKL_4031	104.0	2.65e-27	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0029985_20	retron_type_VI_hth_cluster2_1	42.7	0.000000000012	N/A	Retron
Pfam	UHGV-0029985_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0029985_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0029985_20	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029985_23	UniRef90_B0G1X6	303.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0029985_23	742765.HMPREF9457_02739	302.0	0	N/A	N/A
Pfam	UHGV-0029985_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0029985_23	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_24	phrog_10292	62.0	5.5e-18	N/A	unknown function
UniRef90	UHGV-0029985_24	UniRef90_A0A173R9S2	155.0	1.4013e-45	TM2 domain	N/A
eggNOG-mapper	UHGV-0029985_24	1499689.CCNN01000007_gene1692	132.0	4.4e-38	TM2 domain	N/A
Pfam	UHGV-0029985_24	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0029985_24	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029985_24	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_25	phrog_806	103.8	1.8e-30	N/A	unknown function
UniRef90	UHGV-0029985_25	UniRef90_UPI0006C1B925	236.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029985_25	476272.RUMHYD_01730	211.0	0	N/A	N/A
Pfam	UHGV-0029985_25	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-0029985_25	PF11611,MF_00791,NF041178,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0029985_26	K07273	184.6	0	acm; lysozyme	N/A
PHROG	UHGV-0029985_26	phrog_291	157.1	0	endolysin	lysis
UniRef90	UHGV-0029985_26	UniRef90_UPI00148B2567	230.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0029985_26	33035.JPJF01000043_gene994	222.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0029985_26	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0029985_26	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0029985_26	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029985_27	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-0029985_28	K04763	188.3	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0029985_28	phrog_1	157.9	0	integrase	integration and excision
UniRef90	UHGV-0029985_28	UniRef90_UPI001D067699	609.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0029985_28	411459.RUMOBE_00920	495.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0029985_28	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0029985_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0029985_28	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0029985_28	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_30	phrog_6616	469.6	0	tail protein	tail
UniRef90	UHGV-0029985_30	UniRef90_UPI0015714EA8	716.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0029985_30	1121100.JCM6294_1111	280.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0029985_30	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0029985_30	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0029985_30	PF05113,PF01835,PF03921,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_31	phrog_1194	63.2	3.8e-18	N/A	unknown function
structural_annotation	UHGV-0029985_31	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_32	phrog_1535	263.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0029985_32	UniRef90_A0A173R880	372.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0029985_32	476272.RUMHYD_01785	533.0	0	phage tail tape measure protein	N/A
COG	UHGV-0029985_32	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_33	phrog_706	124.4	4.8e-37	N/A	unknown function
UniRef90	UHGV-0029985_33	UniRef90_UPI00156F9D1C	269.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0029985_33	411459.RUMOBE_01383	200.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0029985_33	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0029985_33	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_34	phrog_11299	111.5	4.3e-33	N/A	unknown function
eggNOG-mapper	UHGV-0029985_34	33035.JPJF01000106_gene3125	104.0	7.67e-27	N/A	N/A
structural_annotation	UHGV-0029985_34	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_35	phrog_3099	133.5	1.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0029985_35	476272.RUMHYD_01782	259.0	0	N/A	N/A
structural_annotation	UHGV-0029985_35	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_36	phrog_3266	87.1	1.4e-25	tail completion	connector
eggNOG-mapper	UHGV-0029985_36	476272.RUMHYD_01781	236.0	0	N/A	N/A
structural_annotation	UHGV-0029985_36	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_37	phrog_556	67.1	1.7e-19	minor head protein	head and packaging
UniRef90	UHGV-0029985_37	UniRef90_UPI0008B4CFF0	133.0	5.42e-37	minor capsid protein	N/A
eggNOG-mapper	UHGV-0029985_37	476272.RUMHYD_01780	177.0	0	N/A	N/A
Pfam	UHGV-0029985_37	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0029985_37	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_38	phrog_3366	106.5	2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0029985_38	476272.RUMHYD_01779	192.0	0	N/A	N/A
structural_annotation	UHGV-0029985_38	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_39	phrog_541	106.7	1.2e-31	head-tail adaptor	connector
eggNOG-mapper	UHGV-0029985_39	476272.RUMHYD_01778	212.0	0	N/A	N/A
UniRef90	UHGV-0029985_41	UniRef90_A0A0M2NI16	298.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-0029985_41	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_42	phrog_194	56.4	3.1e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0029985_42	UniRef90_A0A1C5VV13	61.2	0.0000000434	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0029985_42	397290.C810_05223	80.9	3.42e-16	Phage minor structural protein GP20	N/A
Pfam	UHGV-0029985_42	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0029985_42	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029985_44	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_45	phrog_20016	72.3	5.1e-21	N/A	unknown function
UniRef90	UHGV-0029985_45	UniRef90_A0A316MV88	182.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0029985_45	1226322.HMPREF1545_00077	62.0	0.000000000323	N/A	N/A
structural_annotation	UHGV-0029985_45	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0029985_47	476272.RUMHYD_01770	79.7	0.00000000000000209	N/A	N/A
PHROG	UHGV-0029985_49	phrog_21718	61.2	1.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0029985_49	1235790.C805_00058	101.0	5.21e-25	N/A	N/A
PHROG	UHGV-0029985_50	phrog_31631	62.4	4.9e-18	N/A	unknown function
PHROG	UHGV-0029985_52	phrog_355	57.9	1.5e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0029985_52	UniRef90_A0A396KGT7	207.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029985_52	97138.C820_00250	130.0	4.62e-38	N/A	N/A
Pfam	UHGV-0029985_52	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0029985_52	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_53	phrog_1233	85.1	9.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0029985_53	411490.ANACAC_00786	80.9	6.55e-18	N/A	N/A
UniRef90	UHGV-0029985_54	UniRef90_UPI001105DD43	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-0029985_54	97139.C824_02654	80.1	8.45e-18	N/A	N/A
Pfam	UHGV-0029985_54	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-0029985_54	COG4728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029985_54	PF07866,COG4728	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_55	phrog_1048	55.7	9.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0029985_55	1385512.N784_13055	57.4	0.000000021	N/A	N/A
Pfam	UHGV-0029985_55	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0029985_55	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0029985_55	PF11195,PF04085	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029985_56	UniRef90_A0A843HPX3	70.9	0.00000000000000793	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0029985_56	1235790.C805_00057	57.0	0.000000000413	N/A	N/A
structural_annotation	UHGV-0029985_56	PF13404,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0029985_57	UniRef90_A0A416S3A4	123.0	6.24e-34	CTP synthase	N/A
eggNOG-mapper	UHGV-0029985_57	476272.RUMHYD_01766	69.3	0.0000000000000879	N/A	N/A
PHROG	UHGV-0029985_58	phrog_581	270.1	0	minor head protein	head and packaging
UniRef90	UHGV-0029985_58	UniRef90_A0A373MXM0	546.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0029985_58	476272.RUMHYD_01761	463.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0029985_58	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0029985_58	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0029985_58	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_59	phrog_443	58.2	2.2e-16	holin	lysis
UniRef90	UHGV-0029985_59	UniRef90_UPI000E5CA950	98.6	1.62e-25	holin	N/A
eggNOG-mapper	UHGV-0029985_59	1235802.C823_05612	70.9	0.00000000000000258	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0029985_59	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0029985_59	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_60	phrog_533	259.9	0	portal protein	head and packaging
UniRef90	UHGV-0029985_60	UniRef90_A0A3D2KHB8	326.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0029985_60	397290.C810_05196	342.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0029985_60	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0029985_61	K06909	326.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0029985_61	phrog_3717	155.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0029985_61	UniRef90_A0A416ZL34	729.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0029985_61	33035.JPJF01000106_gene3136	419.0	0	Terminase small subunit	N/A
Pfam	UHGV-0029985_61	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0029985_61	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0029985_61	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0029985_61	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0029985_62	K07474	89.6	7e-26	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0029985_62	phrog_51	108.7	4.9e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0029985_62	UniRef90_A0A173R907	111.0	8.17e-29	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0029985_62	476272.RUMHYD_01754	111.0	1.37e-29	Terminase small subunit	N/A
Pfam	UHGV-0029985_62	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0029985_62	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0029985_62	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_64	phrog_33130	117.0	4.5e-35	N/A	unknown function
UniRef90	UHGV-0029985_64	UniRef90_A0A3B9CD52	73.2	0.00000000000000475	S1-like domain-containing protein	N/A
structural_annotation	UHGV-0029985_64	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-0029985_65	phrog_2329	55.8	5.3e-16	N/A	unknown function
UniRef90	UHGV-0029985_65	UniRef90_UPI001033A0F9	68.9	0.0000000000000402	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	N/A
Pfam	UHGV-0029985_65	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
structural_annotation	UHGV-0029985_65	PF04014,NF007312,COG2336	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0029985	Yes	44,119	40	83	1