vOTU vOTU-094473

vOTU: vOTU-094473

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-094473
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-00408 → vOTU-094473
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0178285
Biosample ID	N/A
Genome length (bp)	24,110 bps
CheckV completeness	68.01% (Medium-quality)
CDS count	43
CDS density	91.47%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	295	Host agreement	76.27
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	13	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 68.01)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0178285_4	476272.RUMHYD_00002	90.9	6.19e-16	N/A	N/A
structural_annotation	UHGV-0178285_4	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-0178285_6	K19304	122.3	5.7e-36	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0178285_6	phrog_10030	97.7	5.4e-29	tail length tape measure protein	tail
UniRef90	UHGV-0178285_6	UniRef90_A0A3D1PRD1	333.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0178285_6	1382304.JNIL01000001_gene2694	102.0	1.73e-22	G5	N/A
Pfam	UHGV-0178285_6	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0178285_6	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0178285_6	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-0178285_7	phrog_1863	72.3	4.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0178285_7	665956.HMPREF1032_03922	103.0	5.18e-28	N/A	N/A
PHROG	UHGV-0178285_8	phrog_1129	62.3	6.4e-18	holin	lysis
UniRef90	UHGV-0178285_8	UniRef90_A0A367FT42	163.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0178285_8	693746.OBV_13280	110.0	9.4e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0178285_8	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0178285_8	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0178285_9	K06400	388.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0178285_9	phrog_95	370.5	0	integrase	integration and excision
UniRef90	UHGV-0178285_9	UniRef90_A0A2V2F5B5	672.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0178285_9	1121468.AUBR01000008_gene2069	300.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0178285_9	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0178285_9	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0178285_9	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0178285_9	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0178285_9	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0178285_10	phrog_22683	148.5	9.80909e-45	N/A	unknown function
UniRef90	UHGV-0178285_10	UniRef90_A0A3E2U205	146.0	4.62428e-44	N/A	N/A
eggNOG-mapper	UHGV-0178285_10	482234.SCAZ3_03515	133.0	8.42e-40	N/A	N/A
AcrCatalog	UHGV-0178285_10	cluster_3962	123.0	3.21e-40	NA	N/A
Pfam	UHGV-0178285_10	PF13783	N/A	N/A	N/A	DUF4177
structural_annotation	UHGV-0178285_10	PF13783,NF008362,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0178285_11	K22300	57.6	3.3e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0178285_11	phrog_8	49.5	0.0000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0178285_11	UniRef90_E2ZI88	103.0	2.82e-25	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0178285_11	748224.HMPREF9436_01379	103.0	4.73e-26	N/A	N/A
Pfam	UHGV-0178285_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178285_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0178285_24	phrog_3584	207.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178285_24	UniRef90_UPI001C02C5E0	160.0	2.24208e-44	N/A	N/A
eggNOG-mapper	UHGV-0178285_24	718252.FP2_16510	148.0	2.81e-40	N/A	N/A
structural_annotation	UHGV-0178285_24	PF01446	N/A	N/A	N/A	N/A
PHROG	UHGV-0178285_25	phrog_36399	54.6	0.0000000000000027	N/A	unknown function
PHROG	UHGV-0178285_26	phrog_8470	277.6	0	N/A	unknown function
UniRef90	UHGV-0178285_26	UniRef90_UPI0019580896	190.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0178285_26	1226322.HMPREF1545_00100	192.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0178285_26	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0178285_26	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0178285_28	phrog_15609	76.4	2.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0178285_28	641112.ACOK01000073_gene2872	68.6	0.000000000159	N/A	N/A
structural_annotation	UHGV-0178285_28	PF11300,NF038070	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178285_31	693746.OBV_18010	79.3	1.64e-16	N/A	N/A
structural_annotation	UHGV-0178285_31	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0178285_32	phrog_338	59.2	1e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178285_32	UniRef90_UPI0015F33F36	183.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0178285_32	748224.HMPREF9436_01465	185.0	0	N/A	N/A
PHROG	UHGV-0178285_33	phrog_1066	56.8	4.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0178285_33	445975.COLSTE_02166	77.0	3.98e-16	N/A	N/A
AcrCatalog	UHGV-0178285_33	cluster_154855	71.2	2.68e-18	NA	N/A
PHROG	UHGV-0178285_34	phrog_9	138.4	6.50006e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0178285_34	UniRef90_UPI001D0087E2	456.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0178285_34	1410630.JNKP01000001_gene1822	633.0	0	phage terminase, large subunit	N/A
COG	UHGV-0178285_34	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0178285_34	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0178285_35	phrog_104	211.9	0	portal protein	head and packaging
UniRef90	UHGV-0178285_35	UniRef90_A0A3E2U200	744.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0178285_35	748224.HMPREF9436_01468	757.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0178285_35	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0178285_35	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0178285_36	phrog_193	123.1	3.4e-36	head maturation protease	head and packaging
UniRef90	UHGV-0178285_36	UniRef90_A0A6N8H118	358.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0178285_36	748224.HMPREF9436_01469	397.0	0	N/A	N/A
COG	UHGV-0178285_36	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-0178285_37	phrog_34144	68.7	7.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0178285_37	742742.HMPREF9452_00763	80.9	8.08e-20	N/A	N/A
structural_annotation	UHGV-0178285_37	PF20111	N/A	N/A	N/A	N/A
PHROG	UHGV-0178285_39	phrog_194	83.8	2.9e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0178285_39	UniRef90_D4K444	156.0	2.8026e-45	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0178285_39	748224.HMPREF9436_03336	159.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0178285_39	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0178285_39	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0178285_40	phrog_10	139.8	2.70002e-41	major head protein	head and packaging
UniRef90	UHGV-0178285_40	UniRef90_A0A1Y4TJU9	511.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0178285_40	748224.HMPREF9436_00690	447.0	0	Phage capsid family	N/A
Pfam	UHGV-0178285_40	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0178285_40	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0178285_40	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0178285_40	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0178285_42	phrog_137	54.2	0.0000000000000019	head-tail adaptor Ad1	connector
UniRef90	UHGV-0178285_42	UniRef90_E2ZGA8	162.0	0	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0178285_42	PF09355	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0178285_43	748224.HMPREF9436_00693	108.0	3.53e-30	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0178285	Yes	24,110	58	68	1