vOTU vOTU-095020

vOTU: vOTU-095020

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-095020
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vGENUS-14502 → vOTU-095020
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1406567
Biosample ID	SAMEA3664679
Genome length (bp)	38,965 bps
CheckV completeness	67.61% (Medium-quality)
CDS count	66
CDS density	89.17%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	599	Host agreement	98.66
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 67.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1406567_2	phrog_29	171.1	0	major head protein	head and packaging
UniRef90	UHGV-1406567_2	UniRef90_A0A2Z4QBB4	337.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-1406567_2	476272.RUMHYD_01946	231.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1406567_2	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1406567_2	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1406567_3	UniRef90_R6N215	82.0	5.26e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-1406567_3	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1406567_4	1298920.KI911353_gene2656	54.3	0.00000016	N/A	N/A
structural_annotation	UHGV-1406567_4	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1406567_6	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1406567_7	UniRef90_UPI001D06C8CA	81.3	6.77e-17	phage tail protein	N/A
eggNOG-mapper	UHGV-1406567_7	1449343.JQLQ01000002_gene1514	57.8	0.0000000199	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-1406567_7	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1406567_8	1123263.AUKY01000015_gene1618	57.4	0.00000000429	N/A	N/A
Pfam	UHGV-1406567_8	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1406567_8	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1406567_9	1121333.JMLH01000047_gene1011	74.7	0.00000000000000168	N/A	N/A
PHROG	UHGV-1406567_10	phrog_1535	186.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1406567_10	1121866.AUGK01000003_gene1437	233.0	0	phage tail tape measure protein	N/A
COG	UHGV-1406567_10	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1406567_11	phrog_1194	104.9	4.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-1406567_11	1121866.AUGK01000003_gene1438	98.2	9.96e-25	N/A	N/A
Pfam	UHGV-1406567_11	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1406567_11	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-1406567_12	phrog_6616	218.5	0	tail protein	tail
eggNOG-mapper	UHGV-1406567_12	445971.ANASTE_00088	124.0	7.17e-27	N/A	N/A
structural_annotation	UHGV-1406567_12	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-1406567_14	K03651	52.1	0.0000000000000093	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-1406567_14	phrog_7158	105.1	2.1e-31	N/A	unknown function
UniRef90	UHGV-1406567_14	UniRef90_A0A1V9QUF5	149.0	9.22e-34	Metallophos domain-containing protein	N/A
eggNOG-mapper	UHGV-1406567_14	565653.EGBG_01980	89.0	0.00000000000000296	Phage minor structural protein	N/A
Pfam	UHGV-1406567_14	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-1406567_14	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
structural_annotation	UHGV-1406567_14	PF14582,MF_00905,NF008359,COG2129	N/A	N/A	N/A	N/A
KOfam	UHGV-1406567_15	K07273	172.7	0	acm; lysozyme	N/A
PHROG	UHGV-1406567_15	phrog_291	137.7	9.49996e-41	endolysin	lysis
UniRef90	UHGV-1406567_15	UniRef90_UPI001D0EE7D8	317.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1406567_15	748224.HMPREF9436_00154	301.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1406567_15	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1406567_15	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1406567_15	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1406567_16	phrog_1863	76.6	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-1406567_16	718252.FP2_04900	143.0	1.05097e-43	N/A	N/A
PHROG	UHGV-1406567_17	phrog_15303	84.9	6.6e-25	N/A	unknown function
UniRef90	UHGV-1406567_20	UniRef90_A0A1Q9JGI6	98.6	1.26e-23	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1406567_20	1033733.CAEK01000007_gene1628	100.0	3.94e-25	N/A	N/A
structural_annotation	UHGV-1406567_20	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
PHROG	UHGV-1406567_21	phrog_374	61.7	8.4e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1406567_21	927704.SELR_12480	88.2	0.00000000000000104	N/A	N/A
PHROG	UHGV-1406567_25	phrog_16490	103.0	1.4e-37	N/A	unknown function
eggNOG-mapper	UHGV-1406567_25	1408437.JNJN01000043_gene803	159.0	4.2039e-45	N/A	N/A
eggNOG-mapper	UHGV-1406567_26	658655.HMPREF0988_00916	119.0	6.06e-33	N/A	N/A
eggNOG-mapper	UHGV-1406567_27	1408437.JNJN01000043_gene801	82.8	8.18e-17	N/A	N/A
KOfam	UHGV-1406567_32	K13525	127.6	6e-38	VCP, CDC48; transitional endoplasmic reticulum ATPase	N/A
PHROG	UHGV-1406567_32	phrog_3757	201.9	0	N/A	unknown function
UniRef90	UHGV-1406567_32	UniRef90_A0A4Z0Y6M2	355.0	0	ATP-dependent zinc metalloprotease FtsH 3	N/A
eggNOG-mapper	UHGV-1406567_32	768710.DesyoDRAFT_1087	212.0	0	ATPase family associated with various cellular activities (AAA)	N/A
PADLOC	UHGV-1406567_32	IetA_00002	185.9	0	NA	ietAS
Pfam	UHGV-1406567_32	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
COG	UHGV-1406567_32	COG0464	N/A	N/A	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	N/A
structural_annotation	UHGV-1406567_32	PF00004,MF_00553,TIGR01242,COG1222	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1406567_33	PF07878	N/A	N/A	N/A	N/A
KOfam	UHGV-1406567_35	K03496	236.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1406567_35	phrog_164	167.1	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1406567_35	UniRef90_A0A349QN03	208.0	0	Chromosome partitioning protein ParA	N/A
eggNOG-mapper	UHGV-1406567_35	1408423.JHYA01000021_gene392	194.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1406567_35	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1406567_35	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1406567_35	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-1406567_36	phrog_7704	41.8	0.000000000018	N/A	unknown function
UniRef90	UHGV-1406567_36	UniRef90_A0A316RLR0	50.8	0.00000171	N/A	N/A
eggNOG-mapper	UHGV-1406567_36	1005994.GTGU_00287	48.9	0.00000789	N/A	N/A
Pfam	UHGV-1406567_36	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-1406567_36	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1406567_36	PF04448	N/A	N/A	N/A	N/A
PHROG	UHGV-1406567_37	phrog_4402	103.4	1.9e-30	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1406567_37	UniRef90_A0A0H5Q331	285.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1406567_37	999413.HMPREF1094_04438	124.0	1.36e-29	Initiator Replication protein	N/A
Pfam	UHGV-1406567_37	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1406567_37	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1406567_37	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1406567_37	PF01051,PF21205,NF038290,COG5527	N/A	N/A	N/A	N/A
UniRef90	UHGV-1406567_38	UniRef90_A0A2A7B6N3	188.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1406567_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1406567_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1406567_38	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1406567_42	phrog_8	51.4	0.000000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-1406567_42	UniRef90_A0A373XY93	95.1	5.86e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1406567_42	665956.HMPREF1032_02614	63.2	0.0000000000243	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1406567_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1406567_42	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1406567_43	UniRef90_A0A7X1LWA7	80.5	2.17e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1406567_43	428125.CLOLEP_02737	59.7	0.0000000000581	N/A	N/A
structural_annotation	UHGV-1406567_43	TIGR03070	N/A	N/A	N/A	N/A
KOfam	UHGV-1406567_44	K07741	60.7	5e-17	antB; anti-repressor protein	N/A
PHROG	UHGV-1406567_44	phrog_130	222.4	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1406567_44	UniRef90_K0J5T4	193.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1406567_44	698758.AXY_01910	193.0	0	Antirepressor	N/A
Pfam	UHGV-1406567_44	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1406567_44	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1406567_44	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1406567_44	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1406567_45	PF10922	N/A	N/A	N/A	N/A
Pfam	UHGV-1406567_47	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1406567_47	PF13443,TIGR02684,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1406567_48	PF14143	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1406567_49	272623.L157023	48.5	0.00000763	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-1406567_49	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1406567_49	PF04606,NF007241,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-1406567_50	phrog_38771	65.7	5.2e-19	N/A	unknown function
Pfam	UHGV-1406567_51	PF13451	N/A	N/A	Probable zinc-ribbon domain	zf-trcl
COG	UHGV-1406567_51	COG4248	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1406567_51	PF13451	N/A	N/A	N/A	N/A
PHROG	UHGV-1406567_52	phrog_2872	238.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1406567_52	UniRef90_A0A8J6JIF1	271.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1406567_52	754027.HMPREF9554_00709	213.0	0	N/A	N/A
Pfam	UHGV-1406567_52	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1406567_52	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1406567_53	phrog_18107	73.1	5.1e-21	N/A	unknown function
UniRef90	UHGV-1406567_53	UniRef90_UPI00058F46CC	86.3	8.92e-18	N/A	N/A
eggNOG-mapper	UHGV-1406567_53	903814.ELI_1274	154.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-1406567_53	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1406567_55	phrog_757	162.6	0	DNA methyltransferase	other
UniRef90	UHGV-1406567_55	UniRef90_UPI001C00B13F	435.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1406567_55	748224.HMPREF9436_03069	320.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1406567_55	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1406567_55	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1406567_57	phrog_843	62.0	6.6e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1406567_57	UniRef90_UPI001159D907	115.0	3.24e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1406567_57	929506.CbC4_1203	107.0	6.89e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1406567_57	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1406567_62	MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1406567_65	PF16677	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1406567	Yes	38,965	48	68	1