vOTU vOTU-095205

vOTU: vOTU-095205

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-095205
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00478 → vGENUS-00461 → vOTU-095205
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0039751
Biosample ID	SAMEA4969162
Genome length (bp)	34,569 bps
CheckV completeness	82.48% (Medium-quality)
CDS count	50
CDS density	93.71%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	41	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → Limiplasma → Limiplasma sp900548145	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 82.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0039751_2	phrog_10993	184.7	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0039751_2	UniRef90_K1UI43	297.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039751_2	1121334.KB911071_gene1970	194.0	0	N/A	N/A
Pfam	UHGV-0039751_2	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0039751_2	PF19789	N/A	N/A	N/A	N/A
COG	UHGV-0039751_3	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0039751_3	PF20328,TIGR04362	N/A	N/A	N/A	N/A
PHROG	UHGV-0039751_4	phrog_37900	323.5	0	N/A	unknown function
UniRef90	UHGV-0039751_4	UniRef90_A0A3D2YEL7	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-0039751_4	552398.HMPREF0866_03098	216.0	0	N/A	N/A
COG	UHGV-0039751_4	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0039751_4	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0039751_7	phrog_199	93.5	2.2e-27	holin	lysis
UniRef90	UHGV-0039751_7	UniRef90_K1UL76	285.0	0	Holin, toxin secretion/phage lysis	N/A
eggNOG-mapper	UHGV-0039751_7	411467.BACCAP_00280	138.0	6.2e-40	Bacteriophage holin family	N/A
Pfam	UHGV-0039751_7	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0039751_7	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0039751_7	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0039751_7	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0039751_8	K08640	97.3	1.4e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0039751_8	phrog_18955	151.5	4.2039e-45	N/A	unknown function
UniRef90	UHGV-0039751_8	UniRef90_UPI001C035E39	613.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0039751_8	1235797.C816_04171	335.0	0	Peptidase M15	N/A
Pfam	UHGV-0039751_8	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0039751_8	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0039751_8	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039751_8	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0039751_9	phrog_12105	107.0	1.2e-31	N/A	unknown function
eggNOG-mapper	UHGV-0039751_9	1226322.HMPREF1545_03850	71.2	0.0000000000000321	N/A	N/A
PHROG	UHGV-0039751_10	phrog_511	229.0	0	internal virion protein	head and packaging
UniRef90	UHGV-0039751_10	UniRef90_A0A8D9UH72	544.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0039751_10	1226322.HMPREF1545_00785	342.0	0	N/A	N/A
structural_annotation	UHGV-0039751_10	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
Pfam	UHGV-0039751_11	PF07889	N/A	N/A	N/A	DUF1664
Pfam	UHGV-0039751_11	PF05377	N/A	N/A	Flagella accessory protein C (FlaC)	FlaC_arch
eggNOG-mapper	UHGV-0039751_12	1226322.HMPREF1545_00786	90.5	2.45e-16	N/A	N/A
PHROG	UHGV-0039751_13	phrog_22978	1172.0	0	N/A	unknown function
UniRef90	UHGV-0039751_13	UniRef90_A0A2V2FDI6	362.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0039751_13	1410650.JHWL01000003_gene2814	332.0	0	N/A	N/A
Pfam	UHGV-0039751_13	PF13699	N/A	N/A	N/A	DUF4157
UniRef90	UHGV-0039751_14	UniRef90_A0A8D9PDQ3	76.3	1.02e-16	ECF sigma factor	N/A
structural_annotation	UHGV-0039751_14	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0039751_17	phrog_16490	54.9	6.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0039751_17	641112.ACOK01000103_gene525	129.0	1.66e-34	N/A	N/A
structural_annotation	UHGV-0039751_18	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0039751_19	1408437.JNJN01000043_gene801	70.5	0.000000000000992	N/A	N/A
KOfam	UHGV-0039751_20	K14059	169.3	0	int; integrase	N/A
PHROG	UHGV-0039751_20	phrog_1	156.8	0	integrase	integration and excision
UniRef90	UHGV-0039751_20	UniRef90_A0A174HFN7	357.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0039751_20	1226322.HMPREF1545_00144	184.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0039751_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0039751_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0039751_20	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039751_21	UniRef90_A0A8D9UHA6	84.3	1.73e-17	Helix-turn-helix XRE-family like protein	N/A
structural_annotation	UHGV-0039751_21	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039751_22	PF10754	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039751_23	UniRef90_UPI0006850BB0	72.4	0.0000000000000308	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039751_23	742738.HMPREF9460_02485	50.4	0.00000148	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0039751_23	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-0039751_25	UniRef90_A0A7X9BRV4	53.1	0.000000227	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039751_25	411473.RUMCAL_01355	52.4	0.000000361	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0039751_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0039751_25	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0039751_26	UniRef90_UPI001EDEB2FF	73.9	0.00000000000000154	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0039751_26	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
Pfam	UHGV-0039751_29	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0039751_29	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0039751_31	phrog_4973	49.3	0.000000000000084	N/A	unknown function
UniRef90	UHGV-0039751_31	UniRef90_A0A3D3Y5F2	66.6	0.000000000000597	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0039751_31	935261.JAGL01000009_gene1175	48.5	0.00000119	Helix-turn-helix domain	N/A
Pfam	UHGV-0039751_31	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0039751_31	PF14090,MF_01586,TIGR00373,COG5625	N/A	N/A	N/A	N/A
PHROG	UHGV-0039751_33	phrog_155	143.8	1.10002e-42	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039751_33	UniRef90_UPI001CF85C41	189.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0039751_33	413066.A1EAD0_9CAUD	170.0	0	ERF superfamily	N/A
Pfam	UHGV-0039751_33	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0039751_33	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0039751_34	phrog_72	59.2	5.8e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039751_34	UniRef90_A0A8D9PDS2	177.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0039751_34	445972.ANACOL_01825	157.0	0	N/A	N/A
structural_annotation	UHGV-0039751_34	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0039751_35	phrog_7370	59.0	7.3e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039751_35	UniRef90_UPI001C122365	134.0	1.77e-38	HNH endonuclease	N/A
Pfam	UHGV-0039751_35	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-0039751_36	K03111	155.9	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0039751_36	phrog_44	151.4	4.2039e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039751_36	UniRef90_A0A1C5QDM6	209.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0039751_36	1226322.HMPREF1545_04080	211.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0039751_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0039751_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0039751_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0039751_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0039751_36	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0039751_37	phrog_2149	68.7	9.9e-20	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039751_37	UniRef90_A0A417QFV0	104.0	1.67e-23	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039751_37	742740.HMPREF9474_03117	179.0	0	N/A	N/A
structural_annotation	UHGV-0039751_37	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0039751_39	K01160	41.4	0.000000000036	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0039751_39	phrog_4632	66.9	2.4e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039751_39	UniRef90_A0A7X8IB41	115.0	1.01e-30	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0039751_39	469604.HMPREF0946_00819	62.0	0.000000000113	N/A	N/A
structural_annotation	UHGV-0039751_39	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0039751_42	phrog_757	180.6	0	DNA methyltransferase	other
UniRef90	UHGV-0039751_42	UniRef90_UPI001C00B13F	404.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0039751_42	748224.HMPREF9436_03069	318.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0039751_42	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0039751_42	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0039751_43	phrog_924	47.2	0.00000000000035	N/A	unknown function
UniRef90	UHGV-0039751_43	UniRef90_A0A2V2EEG3	63.9	0.000000000503	N/A	N/A
Pfam	UHGV-0039751_43	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0039751_44	phrog_38832	55.2	5.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0039751_44	665956.HMPREF1032_00143	65.1	0.000000000217	N/A	N/A
structural_annotation	UHGV-0039751_44	PF07073	N/A	N/A	N/A	N/A
PHROG	UHGV-0039751_45	phrog_3136	129.2	1.3e-38	N/A	unknown function
UniRef90	UHGV-0039751_45	UniRef90_UPI001A9A8D4F	112.0	8.02e-28	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0039751_45	1007096.BAGW01000031_gene120	59.3	0.0000000386	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0039751_45	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0039751_45	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0039751_48	K02647	59.1	6.2e-17	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-0039751_48	UniRef90_UPI00164DE10C	57.4	0.00000000175	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0039751_48	411459.RUMOBE_03347	53.1	0.000000262	PucR C-terminal helix-turn-helix domain	N/A
Pfam	UHGV-0039751_48	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-0039751_48	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-0039751_48	PF13556,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0039751_49	K22300	49.5	0.000000000000093	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0039751_49	phrog_8	66.8	5.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039751_49	UniRef90_A0A8D9PDC4	120.0	2.96e-34	Repressor protein	N/A
eggNOG-mapper	UHGV-0039751_49	351627.Csac_2097	61.6	0.000000000195	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0039751_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039751_49	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0039751_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0039751	Yes	34,569	55	82	1