vOTU vOTU-095363

vOTU: vOTU-095363

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-095363
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01208 → vGENUS-01172 → vOTU-095363
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0209720
Biosample ID	SAMN09781782
Genome length (bp)	27,741 bps
CheckV completeness	69.48% (Medium-quality)
CDS count	38
CDS density	94.28%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	159	Host agreement	96.86
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → RUG115 → RUG115 sp900066395	Total connections	77	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 69.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0209720_1	UniRef90_A0A3R6QMJ7	95.9	3.91e-25	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0209720_1	46234.ANA_C10674	45.8	0.00000662	Helix-turn-helix domain	N/A
Pfam	UHGV-0209720_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0209720_1	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0209720_1	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0209720_3	K18830	50.6	0.000000000000041	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0209720_3	phrog_2967	49.3	0.000000000000079	transcriptional regulator	transcription regulation
UniRef90	UHGV-0209720_3	UniRef90_UPI000E48696E	241.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0209720_3	748224.HMPREF9436_01444	98.2	1.69e-24	N/A	N/A
PADLOC	UHGV-0209720_3	retron_type_VI_hth_cluster2_1	45.0	0.0000000000023	N/A	Retron
Pfam	UHGV-0209720_3	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0209720_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0209720_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0209720_5	PF09035	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209720_6	UniRef90_UPI0018F716FF	150.0	1.4013e-45	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0209720_6	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0209720_9	phrog_3584	157.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0209720_9	1235800.C819_02258	268.0	0	N/A	N/A
structural_annotation	UHGV-0209720_9	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0209720_10	K03469	62.3	1e-17	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0209720_10	phrog_531	41.5	0.00000000001	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209720_10	UniRef90_A0A416Z2U3	302.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0209720_10	1547445.LO80_09595	73.6	0.0000000000000186	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0209720_10	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0209720_10	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0209720_10	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0209720_11	phrog_7370	47.4	0.000000000000094	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209720_11	UniRef90_UPI00164A90AD	141.0	2.98995e-41	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0209720_11	1235800.C819_02254	104.0	2.06e-27	HNH nucleases	N/A
PHROG	UHGV-0209720_12	phrog_24368	72.0	8.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0209720_12	411902.CLOBOL_03886	57.0	0.0000000187	N/A	N/A
KOfam	UHGV-0209720_13	K19779	40.5	0.000000000046	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
eggNOG-mapper	UHGV-0209720_13	658655.HMPREF0988_02575	87.0	3.15e-20	N/A	N/A
Pfam	UHGV-0209720_13	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0209720_13	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0209720_13	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0209720_14	phrog_20593	56.1	5.1e-16	N/A	unknown function
PHROG	UHGV-0209720_15	phrog_986	80.4	1.8e-23	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0209720_15	UniRef90_A0A416Z2U8	142.0	5.63322e-43	N/A	N/A
eggNOG-mapper	UHGV-0209720_15	1204534.J9QD24_9CAUD	71.6	0.00000000000000142	N/A	N/A
Pfam	UHGV-0209720_15	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0209720_15	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0209720_18	1235792.C808_00065	186.0	0	N/A	N/A
PHROG	UHGV-0209720_19	phrog_8470	208.4	0	N/A	unknown function
UniRef90	UHGV-0209720_19	UniRef90_UPI001E5C1444	222.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0209720_19	1280698.AUJS01000007_gene1018	172.0	2.10055e-42	N/A	N/A
Pfam	UHGV-0209720_19	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0209720_19	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0209720_20	phrog_15077	109.4	5.7e-32	N/A	unknown function
UniRef90	UHGV-0209720_20	UniRef90_A0A3A6HZA9	169.0	1.26117e-44	N/A	N/A
eggNOG-mapper	UHGV-0209720_20	1280698.AUJS01000007_gene1019	192.0	0	N/A	N/A
structural_annotation	UHGV-0209720_20	PF11300,NF038070	N/A	N/A	N/A	N/A
UniRef90	UHGV-0209720_22	UniRef90_UPI001D072F7E	85.5	2.49e-17	N/A	N/A
eggNOG-mapper	UHGV-0209720_22	397290.C810_01492	57.4	0.0000000788	N/A	N/A
KOfam	UHGV-0209720_23	K03698	41.5	0.000000000015	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0209720_23	phrog_28876	86.9	1.5e-25	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0209720_23	UniRef90_A0A843HIF4	187.0	0	HDIG domain-containing protein	N/A
eggNOG-mapper	UHGV-0209720_23	1235800.C819_00499	207.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
COG	UHGV-0209720_23	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0209720_23	PF21447,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
KOfam	UHGV-0209720_27	K07474	72.1	1.4e-20	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0209720_27	phrog_2606	144.5	1.4013e-45	terminase small subunit	head and packaging
UniRef90	UHGV-0209720_27	UniRef90_A0A3A9GB54	146.0	3.52e-39	Phage portal protein	N/A
eggNOG-mapper	UHGV-0209720_27	1329250.WOSG25_061460	110.0	4.06e-26	Homeodomain-like domain	N/A
Pfam	UHGV-0209720_27	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0209720_27	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0209720_27	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0209720_27	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0209720_28	K06909	105.7	4.8e-31	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0209720_28	phrog_979	217.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0209720_28	UniRef90_A0A2V2D4K5	990.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0209720_28	748224.HMPREF9436_01395	630.0	0	Terminase-like family	N/A
Pfam	UHGV-0209720_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0209720_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0209720_28	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0209720_29	phrog_156	348.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0209720_29	748224.HMPREF9436_02547	506.0	0	N/A	N/A
structural_annotation	UHGV-0209720_29	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0209720_30	K07584	71.3	1.7e-20	N/A	N/A
PHROG	UHGV-0209720_30	phrog_4478	65.4	6e-19	peptidase	other
UniRef90	UHGV-0209720_30	UniRef90_A0A416Z2U9	188.0	0	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0209720_30	518637.EUBIFOR_00382	55.1	0.0000000259	Cysteine protease Prp	N/A
Pfam	UHGV-0209720_30	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0209720_30	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0209720_31	phrog_13908	226.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0209720_31	1321782.HMPREF1986_00346	79.7	0.0000000000000304	N/A	N/A
PHROG	UHGV-0209720_32	phrog_1357	266.5	0	major head protein	head and packaging
UniRef90	UHGV-0209720_32	UniRef90_A0A3R6PQZ4	626.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0209720_32	657322.FPR_02330	390.0	0	N/A	N/A
Pfam	UHGV-0209720_32	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0209720_32	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0209720_32	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0209720_33	phrog_15239	51.2	0.000000000000015	N/A	unknown function
PHROG	UHGV-0209720_34	phrog_12105	129.2	1.7e-38	N/A	unknown function
eggNOG-mapper	UHGV-0209720_34	1519439.JPJG01000060_gene1891	84.0	3.36e-19	N/A	N/A
PHROG	UHGV-0209720_35	phrog_511	245.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0209720_35	1321782.HMPREF1986_00351	328.0	0	N/A	N/A
structural_annotation	UHGV-0209720_35	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0209720_37	phrog_21397	41.1	0.000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0209720_37	411483.FAEPRAA2165_01035	79.3	0.000000000000249	N/A	N/A
PHROG	UHGV-0209720_38	phrog_22978	150.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0209720_38	1410650.JHWL01000003_gene2814	186.0	3.78351e-44	N/A	N/A
Pfam	UHGV-0209720_38	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0209720	Yes	27,741	41	69	1