vOTU vOTU-095559

vOTU: vOTU-095559

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-095559
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-00650 → vOTU-095559
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1477927
Biosample ID	SAMN06016402
Genome length (bp)	17,184 bps
CheckV completeness	70.32% (Medium-quality)
CDS count	27
CDS density	93.85%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	741	Host agreement	84.21
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	75	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 70.32)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1477927_1	K18830	52.8	0.0000000000000093	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1477927_1	phrog_8	64.4	2.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1477927_1	UniRef90_A0A374N9T4	118.0	7.83e-34	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1477927_1	717605.Theco_0106	77.4	2.58e-17	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-1477927_1	retron_type_VI_hth_cluster2_1	40.6	0.000000000067	N/A	Retron
Pfam	UHGV-1477927_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1477927_1	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1477927_1	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477927_4	PF02796,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1477927_5	phrog_119	54.9	0.0000000000000012	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1477927_5	UniRef90_A0A374N9T6	218.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1477927_5	1235793.C809_01915	121.0	1.01e-33	HNH endonuclease	N/A
COG	UHGV-1477927_5	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1477927_6	phrog_1066	115.8	2.1e-34	N/A	unknown function
UniRef90	UHGV-1477927_6	UniRef90_A0A0D0SQQ8	84.3	1.41e-18	N/A	N/A
eggNOG-mapper	UHGV-1477927_6	1203606.HMPREF1526_00982	104.0	1.89e-27	N/A	N/A
PHROG	UHGV-1477927_7	phrog_9	396.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1477927_7	UniRef90_A0A374NB45	983.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1477927_7	1235793.C809_01917	724.0	0	Phage Terminase	N/A
Pfam	UHGV-1477927_7	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1477927_7	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1477927_7	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1477927_7	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1477927_8	phrog_12	181.8	0	portal protein	head and packaging
UniRef90	UHGV-1477927_8	UniRef90_A0A374NAE1	765.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1477927_8	626523.GCWU000342_01027	407.0	0	Portal protein	N/A
Pfam	UHGV-1477927_8	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1477927_8	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1477927_8	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1477927_9	K01358	119.8	3.2e-35	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1477927_9	phrog_94	187.9	0	head maturation protease	head and packaging
UniRef90	UHGV-1477927_9	UniRef90_A0A374NBM3	393.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1477927_9	1203606.HMPREF1526_00979	172.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1477927_9	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1477927_9	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1477927_9	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1477927_10	phrog_10	150.6	1.26117e-44	major head protein	head and packaging
UniRef90	UHGV-1477927_10	UniRef90_A0A374N9V9	731.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1477927_10	1280689.AUJC01000011_gene1521	335.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1477927_10	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1477927_10	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1477927_10	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1477927_10	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1477927_11	phrog_5223	52.0	0.0000000000000098	neck protein	connector
structural_annotation	UHGV-1477927_11	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1477927_12	phrog_1951	93.1	1.7e-27	head-tail adaptor	connector
UniRef90	UHGV-1477927_12	UniRef90_A0A374MZF9	207.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1477927_12	1414720.CBYM010000040_gene1649	66.6	0.000000000000704	head-tail adaptor	N/A
COG	UHGV-1477927_12	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1477927_12	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1477927_13	UniRef90_UPI001A9B6FBF	165.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1477927_13	1414720.CBYM010000040_gene1650	134.0	1.92e-38	N/A	N/A
structural_annotation	UHGV-1477927_13	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1477927_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1477927_15	phrog_885	136.9	1.10001e-40	major tail protein	tail
UniRef90	UHGV-1477927_15	UniRef90_UPI00164A9E72	159.0	1.12104e-44	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1477927_15	1321814.HMPREF9089_00935	174.0	0	N/A	N/A
structural_annotation	UHGV-1477927_15	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1477927_16	phrog_1021	50.5	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-1477927_16	1321778.HMPREF1982_03556	49.7	0.00000561	N/A	N/A
PHROG	UHGV-1477927_18	phrog_23464	254.3	0	N/A	unknown function
UniRef90	UHGV-1477927_18	UniRef90_A0A1C6JGQ9	179.0	1.68156e-44	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1477927_18	665950.HMPREF1025_02660	182.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-1477927_18	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1477927_18	COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-1477927_19	UniRef90_A0A1G5CPA2	113.0	8.85e-27	Phage-related protein	N/A
eggNOG-mapper	UHGV-1477927_19	1246.JMEA01000006_gene51	71.2	0.00000000000681	phage tail	N/A
COG	UHGV-1477927_19	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1477927_19	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1477927_20	phrog_1067	130.0	1.4e-38	minor head protein	head and packaging
UniRef90	UHGV-1477927_20	UniRef90_A0A348ZBV6	159.0	1.07003e-41	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1477927_20	1160721.RBI_I01574	124.0	5.14e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-1477927_20	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1477927_20	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1477927_20	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1477927_20	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1477927_21	UniRef90_A0A374N9Y2	305.0	0	N/A	N/A
Pfam	UHGV-1477927_21	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1477927_21	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1477927_23	642492.Clole_0840	87.4	5.6e-22	N/A	N/A
Pfam	UHGV-1477927_23	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
PHROG	UHGV-1477927_24	phrog_21357	95.1	5.4e-28	endolysin	lysis
UniRef90	UHGV-1477927_24	UniRef90_A0A373L0D7	529.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1477927_24	693746.OBV_19030	125.0	2.89e-32	CHAP domain	N/A
Pfam	UHGV-1477927_24	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1477927_24	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1477927_24	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1477927_24	PF01471,PF00877,TIGR02594,TIGR03979,COG3942	N/A	N/A	N/A	N/A
UniRef90	UHGV-1477927_25	UniRef90_J5UJ89	56.6	0.00000000222	D12 class N6 adenine-specific DNA methyltransferase domain protein (Fragment)	N/A
eggNOG-mapper	UHGV-1477927_25	411902.CLOBOL_03426	73.2	0.00000000000000547	COG COG0338 Site-specific DNA methylase	N/A
Pfam	UHGV-1477927_25	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-1477927_25	COG0338	N/A	N/A	DNA-adenine methylase	N/A
KOfam	UHGV-1477927_26	K06223	133.1	2.5e-39	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-1477927_26	phrog_56	105.6	6.5e-31	DNA methyltransferase	other
UniRef90	UHGV-1477927_26	UniRef90_A0A1C6HHY1	343.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-1477927_26	411471.SUBVAR_06973	166.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-1477927_26	MTase_II_00033	74.8	1.8e-21	Type II methyltransferase	RM
Pfam	UHGV-1477927_26	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-1477927_26	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-1477927_26	MF_00934,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-1477927_27	K07727	77.0	3.8e-22	K07727; putative transcriptional regulator	N/A
PHROG	UHGV-1477927_27	phrog_3	43.2	0.000000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-1477927_27	UniRef90_A0A413QHG2	175.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1477927_27	411471.SUBVAR_07446	120.0	1.11e-34	helix-turn-helix	N/A
Pfam	UHGV-1477927_27	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1477927_27	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1477927_27	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1477927	Yes	17,184	42	70	1