vOTU vOTU-095669

vOTU: vOTU-095669

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-095669
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter lactaris
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-04023 → vGENUS-06446 → vOTU-095669
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0803780
Biosample ID	SAMN06860650
Genome length (bp)	23,704 bps
CheckV completeness	62.56% (Medium-quality)
CDS count	37
CDS density	90.10%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter	Total connections	130	Host agreement	79.23
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter lactaris	Total connections	49	Host agreement	83.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 62.56)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0803780_1	phrog_581	91.8	6e-27	minor head protein	head and packaging
UniRef90	UHGV-0803780_1	UniRef90_A0A415D8B7	593.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0803780_1	471875.RUMLAC_01547	245.0	0	N/A	N/A
Pfam	UHGV-0803780_1	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0803780_1	COG2369	N/A	N/A	N/A	N/A
KOfam	UHGV-0803780_3	K07584	48.8	0.00000000000012	N/A	N/A
PHROG	UHGV-0803780_3	phrog_4478	80.2	1.7e-23	peptidase	other
UniRef90	UHGV-0803780_3	UniRef90_A0A415D8F7	189.0	0	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0803780_3	411461.DORFOR_00746	154.0	0	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0803780_3	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0803780_3	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0803780_3	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_4	phrog_2303	130.4	1.4e-38	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0803780_4	411461.DORFOR_00745	247.0	0	N/A	N/A
structural_annotation	UHGV-0803780_4	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_5	phrog_10	169.6	0	major head protein	head and packaging
UniRef90	UHGV-0803780_5	UniRef90_A0A391PHY8	622.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0803780_5	411461.DORFOR_00744	585.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-0803780_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0803780_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0803780_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0803780_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_6	phrog_541	91.8	5.6e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0803780_6	411461.DORFOR_00743	164.0	0	N/A	N/A
PHROG	UHGV-0803780_7	phrog_3366	87.2	1.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0803780_7	742723.HMPREF9477_00903	157.0	0	N/A	N/A
Pfam	UHGV-0803780_7	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0803780_7	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_8	phrog_556	90.4	1.5e-26	minor head protein	head and packaging
UniRef90	UHGV-0803780_8	UniRef90_A0A415D8C9	223.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0803780_8	742723.HMPREF9477_00902	152.0	0	Minor capsid protein	N/A
Pfam	UHGV-0803780_8	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0803780_8	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_9	phrog_3266	144.3	3.79752e-43	tail completion	connector
UniRef90	UHGV-0803780_9	UniRef90_A0A2N2DTS1	133.0	2.01e-37	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0803780_9	742723.HMPREF9477_00901	198.0	0	N/A	N/A
structural_annotation	UHGV-0803780_9	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_10	phrog_3099	191.0	0	N/A	unknown function
UniRef90	UHGV-0803780_10	UniRef90_A0A3P6KYP0	164.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0803780_10	742723.HMPREF9477_00900	258.0	0	N/A	N/A
structural_annotation	UHGV-0803780_10	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_11	phrog_4450	58.2	1.7e-16	N/A	unknown function
UniRef90	UHGV-0803780_11	UniRef90_UPI001A8FEF87	58.5	0.00000000802	AP endonuclease	N/A
eggNOG-mapper	UHGV-0803780_11	1280692.AUJL01000004_gene838	59.3	0.000000000675	N/A	N/A
Pfam	UHGV-0803780_11	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0803780_11	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_12	phrog_706	157.7	0	N/A	unknown function
UniRef90	UHGV-0803780_12	UniRef90_UPI001CD5259B	255.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0803780_12	742723.HMPREF9477_00898	259.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0803780_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0803780_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_13	phrog_19074	445.9	0	N/A	unknown function
UniRef90	UHGV-0803780_13	UniRef90_A0A415D8X3	1999.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0803780_13	411460.RUMTOR_02094	776.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0803780_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0803780_13	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0803780_13	COG4487	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0803780_13	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_14	phrog_33	52.1	0.000000000000014	distal tail protein Dit	tail
eggNOG-mapper	UHGV-0803780_14	411462.DORLON_00776	337.0	0	N/A	N/A
PHROG	UHGV-0803780_15	phrog_538	206.8	0	minor tail protein	tail
UniRef90	UHGV-0803780_15	UniRef90_UPI001F3E20C1	305.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0803780_15	742765.HMPREF9457_03374	483.0	0	N/A	N/A
Pfam	UHGV-0803780_15	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0803780_15	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_16	phrog_9994	217.8	0	N/A	unknown function
UniRef90	UHGV-0803780_16	UniRef90_A0A6L8RVX5	241.0	0	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0803780_16	411460.RUMTOR_02097	262.0	0	N/A	N/A
structural_annotation	UHGV-0803780_16	PF20747,PF17900	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_17	phrog_12931	79.9	2.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-0803780_17	411461.DORFOR_00728	146.0	9.24857e-44	N/A	N/A
PHROG	UHGV-0803780_18	phrog_1382	73.2	1.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0803780_18	411461.DORFOR_00727	100.0	1.72e-27	N/A	N/A
PHROG	UHGV-0803780_20	phrog_937	69.8	3.6e-20	hemolysin	other
eggNOG-mapper	UHGV-0803780_20	742740.HMPREF9474_03172	128.0	2.15e-37	N/A	N/A
eggNOG-mapper	UHGV-0803780_21	1291050.JAGE01000001_gene431	59.3	0.000000000751	N/A	N/A
KOfam	UHGV-0803780_22	K01448	110.3	2e-32	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0803780_22	phrog_435	183.3	0	endolysin	lysis
UniRef90	UHGV-0803780_22	UniRef90_A0A1C6L515	285.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0803780_22	411461.DORFOR_01187	226.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0803780_22	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0803780_22	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0803780_22	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-0803780_23	K14059	150.7	1.54143e-44	int; integrase	N/A
PHROG	UHGV-0803780_23	phrog_1	167.9	0	integrase	integration and excision
UniRef90	UHGV-0803780_23	UniRef90_UPI0018A893E8	597.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0803780_23	1280698.AUJS01000007_gene999	324.0	0	Phage integrase family	N/A
Pfam	UHGV-0803780_23	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0803780_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0803780_23	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0803780_23	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0803780_24	K18843	80.4	3.2e-23	hicB; antitoxin HicB	N/A
PHROG	UHGV-0803780_24	phrog_497	91.6	1.2e-26	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0803780_24	UniRef90_A0A414P9D9	272.0	0	Type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-0803780_24	97139.C824_05961	218.0	0	Toxin-antitoxin system, antitoxin component, HicB family	N/A
Pfam	UHGV-0803780_24	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0803780_24	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0803780_24	PF15919,COG1598	N/A	N/A	N/A	N/A
KOfam	UHGV-0803780_25	K07339	60.8	1.9e-17	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-0803780_25	phrog_353	64.7	1e-18	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0803780_25	UniRef90_A0A414P9D1	119.0	4.48e-34	Type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0803780_25	1120998.AUFC01000028_gene2410	87.0	4.21e-22	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0803780_25	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0803780_25	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0803780_25	PF07927,COG1724	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0803780_26	PF12869,PF01336,NF012035,COG4085	N/A	N/A	N/A	N/A
KOfam	UHGV-0803780_28	K18830	80.5	2.7e-23	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0803780_28	phrog_4	57.3	1.4e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-0803780_28	UniRef90_A0A7X5EGQ0	196.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0803780_28	1235792.C808_00054	155.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0803780_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0803780_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0803780_28	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0803780_30	phrog_32168	69.5	3.6e-20	N/A	unknown function
PHROG	UHGV-0803780_33	phrog_5070	168.4	0	N/A	unknown function
UniRef90	UHGV-0803780_33	UniRef90_C6L9Y5	117.0	9.42e-30	Bacterial transferase hexapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0803780_33	411470.RUMGNA_02189	127.0	2.69e-34	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0803780_33	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0803780_33	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
PHROG	UHGV-0803780_35	phrog_253	164.1	0	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0803780_35	UniRef90_A0A564SBZ1	229.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0803780_35	1256908.HMPREF0373_00657	181.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-0803780_35	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0803780_35	PF05565,NF002139	N/A	N/A	N/A	N/A
UniRef90	UHGV-0803780_36	UniRef90_R6RDX0	51.2	0.000000446	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-0803780_37	phrog_2872	206.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0803780_37	UniRef90_A0A1C5SND3	417.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0803780_37	1304866.K413DRAFT_0827	377.0	0	AAA domain	N/A
Pfam	UHGV-0803780_37	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0803780_37	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0803780	Yes	23,704	45	63	1