vOTU vOTU-095746

vOTU: vOTU-095746

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-095746
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00886 → vGENUS-00783 → vOTU-095746
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0099205
Biosample ID	SAMEA3541472
Genome length (bp)	28,793 bps
CheckV completeness	79.69% (Medium-quality)
CDS count	47
CDS density	92.70%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	67	Host agreement	82.09
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	17	Host agreement	70.59

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 79.69)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0099205_1	K14059	151.1	1.54143e-44	int; integrase	N/A
PHROG	UHGV-0099205_1	phrog_1	154.1	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-0099205_1	UniRef90_UPI001C392616	660.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0099205_1	411473.RUMCAL_01506	386.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0099205_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0099205_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0099205_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_2	phrog_30113	102.7	4.1e-30	N/A	unknown function
UniRef90	UHGV-0099205_2	UniRef90_A0A356K491	213.0	0	4Fe-4S ferredoxin-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0099205_2	1302863.I872_10475	130.0	2.89e-34	N/A	N/A
Pfam	UHGV-0099205_2	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-0099205_2	PF01351,MF_00052_A,TIGR00729,COG1039	N/A	N/A	N/A	N/A
UniRef90	UHGV-0099205_3	UniRef90_A0A374RH46	194.0	0	bPH_3 domain-containing protein	N/A
Pfam	UHGV-0099205_3	PF14470	N/A	N/A	Bacterial PH domain	bPH_3
KOfam	UHGV-0099205_4	K01356	93.4	4.1e-27	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0099205_4	phrog_4	123.8	1.7e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-0099205_4	UniRef90_E7MP24	263.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0099205_4	706433.HMPREF9430_01295	263.0	0	N/A	N/A
PADLOC	UHGV-0099205_4	retron_type_VI_hth_cluster2_1	42.9	0.000000000011	N/A	Retron
Pfam	UHGV-0099205_4	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-0099205_4	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0099205_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0099205_4	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
KOfam	UHGV-0099205_5	K07729	56.3	8.5e-16	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0099205_5	phrog_8	57.4	4.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0099205_5	UniRef90_A0A840PS20	69.7	0.000000000000025	DNA-binding XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0099205_5	997350.HMPREF9129_1691	62.0	0.0000000000828	PFAM Helix-turn-helix	N/A
Pfam	UHGV-0099205_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0099205_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0099205_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_6	phrog_14657	48.6	0.00000000000012	N/A	unknown function
UniRef90	UHGV-0099205_6	UniRef90_A0A7X8JG85	61.6	0.000000000249	N/A	N/A
eggNOG-mapper	UHGV-0099205_6	693746.OBV_34200	64.7	0.00000000000241	N/A	N/A
Pfam	UHGV-0099205_6	PF13780	N/A	N/A	N/A	DUF4176
COG	UHGV-0099205_6	COG4495	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_8	phrog_6058	63.4	2.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0099205_8	658088.HMPREF0987_00666	70.9	0.00000000000000271	N/A	N/A
structural_annotation	UHGV-0099205_8	PF12728,TIGR01764	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_10	phrog_428	115.1	1.1e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099205_10	UniRef90_UPI001D14D4CB	312.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0099205_10	428127.EUBDOL_01512	133.0	3.62e-35	DnaD domain protein	N/A
Pfam	UHGV-0099205_10	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0099205_10	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0099205_10	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0099205_10	PF09524,PF07106,MF_01177,TIGR02220,TIGR01610,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_12	phrog_643	54.3	0.0000000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0099205_12	UniRef90_UPI001D14AAA4	158.0	0	N/A	N/A
Pfam	UHGV-0099205_12	PF11195	N/A	N/A	N/A	DUF2829
KOfam	UHGV-0099205_13	K02338	265.4	0	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	N/A
PHROG	UHGV-0099205_13	phrog_947	202.1	0	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099205_13	UniRef90_UPI001D13CF1D	676.0	0	DNA polymerase III subunit beta	N/A
eggNOG-mapper	UHGV-0099205_13	658659.HMPREF0983_00467	189.0	0	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	N/A
Pfam	UHGV-0099205_13	PF00712	N/A	N/A	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
Pfam	UHGV-0099205_13	PF02767	N/A	N/A	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
Pfam	UHGV-0099205_13	PF02768	N/A	N/A	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
NCBIFam	UHGV-0099205_13	TIGR00663.1	N/A	N/A	DNA polymerase III subunit beta	N/A
COG	UHGV-0099205_13	COG0592	N/A	N/A	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	N/A
structural_annotation	UHGV-0099205_13	PF02768,PF00712,PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_14	phrog_7445	53.9	0.0000000000000033	N/A	unknown function
UniRef90	UHGV-0099205_14	UniRef90_UPI001D142670	233.0	0	PcfK-like family protein	N/A
eggNOG-mapper	UHGV-0099205_14	1122931.AUAE01000005_gene3272	56.6	0.0000000176	PcfK-like protein	N/A
Pfam	UHGV-0099205_14	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-0099205_14	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_16	phrog_8470	126.4	1.50001e-40	N/A	unknown function
UniRef90	UHGV-0099205_16	UniRef90_UPI001D1558B6	695.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0099205_16	1232449.BAHV02000018_gene1540	164.0	2.03188e-43	PcfJ-like protein	N/A
Pfam	UHGV-0099205_16	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0099205_16	PF14284,NF008072	N/A	N/A	N/A	N/A
KOfam	UHGV-0099205_18	K04763	144.0	1.69978e-42	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0099205_18	phrog_1	122.5	5.4e-36	integrase	integration and excision
UniRef90	UHGV-0099205_18	UniRef90_UPI001D156F0D	559.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0099205_18	908340.HMPREF9406_2589	222.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0099205_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0099205_18	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0099205_18	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_23	phrog_7711	87.9	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0099205_23	1445809.A0A0A7AR03_9CAUD	66.6	0.00000000000205	N/A	N/A
PHROG	UHGV-0099205_25	phrog_918	96.6	1.4e-28	N/A	unknown function
UniRef90	UHGV-0099205_25	UniRef90_UPI001D14BC7E	242.0	0	N/A	N/A
eggNOG-mapper	UHGV-0099205_25	411473.RUMCAL_00361	95.9	2.21e-24	N/A	N/A
Pfam	UHGV-0099205_25	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0099205_26	PF11061	N/A	N/A	N/A	N/A
KOfam	UHGV-0099205_27	K03111	130.2	2.8e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0099205_27	phrog_44	140.3	1.29998e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099205_27	UniRef90_UPI001D13B790	248.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0099205_27	518637.EUBIFOR_00985	156.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0099205_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0099205_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0099205_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0099205_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0099205_27	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_28	phrog_1689	66.8	5.7e-19	nucleotide kinase	other
UniRef90	UHGV-0099205_28	UniRef90_UPI001D150D86	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0099205_28	411473.RUMCAL_00920	98.6	7.17e-26	N/A	N/A
Pfam	UHGV-0099205_28	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0099205_28	PF11753	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0099205_30	TIGR01637	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_31	phrog_4525	71.7	1.5e-20	N/A	unknown function
UniRef90	UHGV-0099205_31	UniRef90_A0A0F7PX83	73.6	0.00000000000119	Putative lipoprotein	N/A
eggNOG-mapper	UHGV-0099205_31	985762.SAGN_11402	57.4	0.000000178	N/A	N/A
PHROG	UHGV-0099205_32	phrog_119	64.9	1.3e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0099205_32	UniRef90_A0A412UTE1	143.0	2.49992e-42	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0099205_32	1232446.BAIE02000002_gene820	135.0	3.66e-40	HNH nucleases	N/A
COG	UHGV-0099205_32	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0099205_33	phrog_361	99.6	2.6e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0099205_33	UniRef90_UPI001D1546DE	231.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0099205_33	1235798.C817_04581	134.0	4.74e-39	Phage terminase, small subunit	N/A
Pfam	UHGV-0099205_33	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0099205_33	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_34	phrog_9	308.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0099205_34	UniRef90_UPI001D14D10A	1169.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0099205_34	1232446.BAIE02000002_gene823	936.0	0	Phage Terminase	N/A
Pfam	UHGV-0099205_34	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0099205_34	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0099205_34	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0099205_34	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_35	phrog_12	165.2	0	portal protein	head and packaging
UniRef90	UHGV-0099205_35	UniRef90_UPI001D13A36B	754.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0099205_35	1232446.BAIE02000002_gene824	562.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0099205_35	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0099205_35	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0099205_35	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0099205_35	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0099205_36	K06904	150.1	2.24208e-44	N/A	N/A
PHROG	UHGV-0099205_36	phrog_80	170.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0099205_36	UniRef90_UPI001D141099	362.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0099205_36	1232446.BAIE02000002_gene825	253.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0099205_36	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0099205_36	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0099205_36	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0099205_36	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_37	phrog_10	193.8	0	major head protein	head and packaging
UniRef90	UHGV-0099205_37	UniRef90_UPI001D139C25	847.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0099205_37	1235798.C817_04585	423.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0099205_37	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0099205_37	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0099205_37	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0099205_37	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_38	phrog_2550	66.0	4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0099205_38	1232446.BAIE02000002_gene827	102.0	1.71e-27	N/A	N/A
structural_annotation	UHGV-0099205_38	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_39	phrog_19734	117.4	9.4e-35	N/A	unknown function
UniRef90	UHGV-0099205_39	UniRef90_UPI001D15BD22	224.0	0	head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0099205_39	1232446.BAIE02000002_gene828	105.0	4.38e-28	N/A	N/A
structural_annotation	UHGV-0099205_39	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0099205_40	1232446.BAIE02000002_gene829	79.7	6.95e-18	N/A	N/A
structural_annotation	UHGV-0099205_40	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0099205_41	UniRef90_R6UNR2	113.0	6e-29	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0099205_41	908340.HMPREF9406_2573	113.0	1.01e-29	N/A	N/A
structural_annotation	UHGV-0099205_41	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_42	phrog_88	72.6	5.9e-21	major tail protein	tail
UniRef90	UHGV-0099205_42	UniRef90_A0A3E3E439	182.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0099205_42	33035.JPJF01000039_gene278	108.0	7.71e-27	N/A	N/A
NCBIFam	UHGV-0099205_42	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0099205_42	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0099205_45	K10421	47.9	0.00000000000011	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0099205_45	phrog_23464	248.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0099205_45	33035.JPJF01000023_gene3232	275.0	0	phage tail tape measure protein	N/A
COG	UHGV-0099205_45	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0099205_45	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_46	phrog_33	65.7	1.2e-18	distal tail protein Dit	tail
UniRef90	UHGV-0099205_46	UniRef90_A0A3E3E586	228.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0099205_46	1232446.BAIE02000002_gene835	209.0	0	phage tail	N/A
COG	UHGV-0099205_46	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0099205_46	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0099205_47	phrog_1067	325.7	0	minor head protein	head and packaging
UniRef90	UHGV-0099205_47	UniRef90_UPI001D158A25	1061.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0099205_47	1232446.BAIE02000002_gene836	501.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0099205_47	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0099205_47	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0099205_47	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0099205_47	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0099205	Yes	28,793	35	80	1