vOTU vOTU-095771

vOTU: vOTU-095771

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-095771
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00373 → vGENUS-00237 → vOTU-095771
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001 → SFJ001 sp004555865
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1464873
Biosample ID	SAMN03418273
Genome length (bp)	23,803 bps
CheckV completeness	53.77% (Medium-quality)
CDS count	35
CDS density	93.30%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001 → SFJ001 sp004555865	Total connections	31	Host agreement	77.42
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 53.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1464873_2	1408437.JNJN01000039_gene389	84.3	0.0000000000000618	heme binding	N/A
COG	UHGV-1464873_2	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
eggNOG-mapper	UHGV-1464873_3	1506994.JNLQ01000004_gene3618	206.0	0	N/A	N/A
UniRef90	UHGV-1464873_4	UniRef90_A0A4R1R5G7	81.3	1.36e-19	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-1464873_4	658088.HMPREF0987_00997	75.9	3.14e-18	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-1464873_4	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-1464873_4	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-1464873_5	K14059	99.2	6.6e-29	int; integrase	N/A
PHROG	UHGV-1464873_5	phrog_1	107.0	2.4e-31	integrase	integration and excision
UniRef90	UHGV-1464873_5	UniRef90_UPI001897E1C8	149.0	8.83e-38	site-specific integrase	N/A
eggNOG-mapper	UHGV-1464873_5	1410633.JHWR01000028_gene773	102.0	2.26e-21	Phage integrase family	N/A
Pfam	UHGV-1464873_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1464873_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1464873_5	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-1464873_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1464873_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1464873_6	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1464873_7	1195236.CTER_1717	53.9	0.000000973	N/A	N/A
structural_annotation	UHGV-1464873_7	PF10358	N/A	N/A	N/A	N/A
COG	UHGV-1464873_9	COG4197	N/A	N/A	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	N/A
structural_annotation	UHGV-1464873_9	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1464873_10	phrog_8	46.4	0.00000000000091	transcriptional regulator	transcription regulation
UniRef90	UHGV-1464873_10	UniRef90_UPI001C009F10	112.0	3.1e-31	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1464873_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1464873_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1464873_10	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1464873_11	phrog_463	221.7	0	anti-repressor	transcription regulation
UniRef90	UHGV-1464873_11	UniRef90_UPI00137B411D	275.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-1464873_11	411490.ANACAC_00813	241.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1464873_11	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1464873_11	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1464873_11	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1464873_11	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1464873_12	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1464873_13	596152.DesU5LDRAFT_1910	89.0	3.72e-19	N/A	N/A
structural_annotation	UHGV-1464873_13	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1464873_18	phrog_253	117.8	8.7e-35	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1464873_18	UniRef90_E2ZNS5	171.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-1464873_18	748224.HMPREF9436_03356	171.0	0	Siphovirus Gp157	N/A
Pfam	UHGV-1464873_18	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1464873_18	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1464873_19	phrog_7838	134.9	6.3e-40	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1464873_19	UniRef90_A0A8D9UGW3	228.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1464873_19	742767.HMPREF9456_02052	182.0	0	N/A	N/A
structural_annotation	UHGV-1464873_19	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-1464873_20	phrog_72	58.1	1.3e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1464873_20	UniRef90_UPI000C7BF263	173.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1464873_20	445972.ANACOL_01825	143.0	2.47007e-41	N/A	N/A
structural_annotation	UHGV-1464873_20	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1464873_21	phrog_7566	81.8	5.8e-24	N/A	unknown function
UniRef90	UHGV-1464873_21	UniRef90_A0A8D9UHC0	80.9	1.06e-17	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1464873_21	693746.OBV_25470	90.9	3.62e-22	N/A	N/A
KOfam	UHGV-1464873_22	K03111	112.8	5.1e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1464873_22	phrog_44	120.5	1.6e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1464873_22	UniRef90_UPI001F420DC7	133.0	2.7e-37	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1464873_22	445972.ANACOL_01827	120.0	2.61e-33	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1464873_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1464873_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1464873_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1464873_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1464873_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1464873_23	phrog_270	112.0	7.7e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1464873_23	UniRef90_UPI000497F8A6	139.0	3.36e-37	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1464873_23	1232446.BAIE02000002_gene816	139.0	5.64e-38	N/A	N/A
structural_annotation	UHGV-1464873_23	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-1464873_24	K02314	230.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1464873_24	phrog_19	218.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1464873_24	UniRef90_UPI001F1C052D	434.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-1464873_24	1203606.HMPREF1526_01325	164.0	2.34017e-43	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1464873_24	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1464873_24	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1464873_24	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1464873_24	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-1464873_25	K01160	44.2	0.0000000000054	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1464873_25	phrog_1682	69.0	8.2e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1464873_25	UniRef90_A0A6N8IJL7	96.7	1.79e-23	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1464873_25	428125.CLOLEP_01819	84.7	1.58e-19	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1464873_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1464873_25	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1464873_27	phrog_757	227.5	0	DNA methyltransferase	other
UniRef90	UHGV-1464873_27	UniRef90_UPI0006A41431	249.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1464873_27	1235790.C805_00032	273.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1464873_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1464873_27	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1464873_30	phrog_6721	294.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1464873_30	665950.HMPREF1025_01974	281.0	0	N/A	N/A
structural_annotation	UHGV-1464873_30	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1464873_31	phrog_18716	155.2	0	N/A	unknown function
UniRef90	UHGV-1464873_31	UniRef90_A0A5B9YFW1	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-1464873_31	1508644.SFBmNL_00403	129.0	5.59e-36	N/A	N/A
Pfam	UHGV-1464873_31	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1464873_31	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-1464873_33	phrog_36	71.6	1.4e-20	transcriptional regulator	transcription regulation
Pfam	UHGV-1464873_33	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1464873_33	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1464873_33	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1464873_34	phrog_5070	143.4	7.39886e-43	N/A	unknown function
eggNOG-mapper	UHGV-1464873_34	1094553.MCS_00034	80.1	0.00000000000000338	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	N/A
COG	UHGV-1464873_34	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1464873_34	MF_01691,NF040481	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1464873_35	PF10013,COG4338	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1464873	Yes	23,803	55	54	1