vOTU vOTU-096612

vOTU: vOTU-096612

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-096612
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00026 → vGENUS-00441 → vOTU-096612
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1433210
Biosample ID	SAMEA3665126
Genome length (bp)	40,300 bps
CheckV completeness	70.38% (Medium-quality)
CDS count	62
CDS density	87.22%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	3396	Host agreement	90.46
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira eligens_A	Total connections	12	Host agreement	83.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 70.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1433210_1	phrog_25456	57.2	2.8e-16	N/A	unknown function
KOfam	UHGV-1433210_2	K07455	156.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1433210_2	phrog_148	172.2	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1433210_2	UniRef90_A0A317UEK3	277.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1433210_2	1298920.KI911353_gene2727	249.0	0	RecT family	N/A
Pfam	UHGV-1433210_2	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1433210_2	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1433210_2	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1433210_2	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1433210_4	K19171	103.2	2.4e-30	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-1433210_4	phrog_77	180.4	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1433210_4	UniRef90_A0A8D9PGW5	874.0	0	Chromosome partition protein	N/A
eggNOG-mapper	UHGV-1433210_4	1298920.KI911353_gene2731	260.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1433210_4	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1433210_4	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1433210_4	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
KOfam	UHGV-1433210_6	K03111	54.0	1.1e-17	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1433210_6	phrog_26861	120.3	1.1e-35	N/A	unknown function
UniRef90	UHGV-1433210_6	UniRef90_A0A8D9PGK1	405.0	0	Single strand binding protein	N/A
eggNOG-mapper	UHGV-1433210_6	515620.EUBELI_01590	251.0	0	N/A	N/A
Pfam	UHGV-1433210_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1433210_6	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1433210_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1433210_6	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1433210_7	K07699	43.0	0.0000000000049	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
UniRef90	UHGV-1433210_7	UniRef90_A0A8D9UIQ5	106.0	4.76e-28	Sporulation initiation factor	N/A
eggNOG-mapper	UHGV-1433210_7	1410617.JHXH01000004_gene1309	51.6	0.00000238	Sporulation initiation factor Spo0A C terminal	N/A
Pfam	UHGV-1433210_7	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-1433210_7	COG0745	N/A	N/A	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	N/A
structural_annotation	UHGV-1433210_7	PF08769,TIGR02875	N/A	N/A	N/A	N/A
KOfam	UHGV-1433210_8	K01449	71.2	2e-20	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1433210_8	phrog_14642	42.1	0.00000000001	endolysin	lysis
UniRef90	UHGV-1433210_8	UniRef90_A0A8D9PGU7	345.0	0	Cell Wall Hydrolase	N/A
eggNOG-mapper	UHGV-1433210_8	742733.HMPREF9469_00034	91.7	1.39e-20	Cell Wall Hydrolase	N/A
Pfam	UHGV-1433210_8	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-1433210_8	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-1433210_8	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_9	phrog_463	210.5	0	anti-repressor	transcription regulation
UniRef90	UHGV-1433210_9	UniRef90_A0A8D9PGL6	456.0	0	P22_AR protein	N/A
eggNOG-mapper	UHGV-1433210_9	596329.HMPREF0631_1352	164.0	0	BRO family, N-terminal domain protein	N/A
Pfam	UHGV-1433210_9	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1433210_9	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-1433210_9	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1433210_9	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-1433210_13	UniRef90_UPI001D0090A6	137.0	7.94004e-41	N/A	N/A
eggNOG-mapper	UHGV-1433210_13	411470.RUMGNA_03231	98.6	2.54e-26	N/A	N/A
Pfam	UHGV-1433210_13	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1433210_13	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1433210_13	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1433210_14	K22300	47.9	0.00000000000028	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1433210_14	phrog_2967	49.5	0.000000000000073	transcriptional regulator	transcription regulation
UniRef90	UHGV-1433210_14	UniRef90_UPI001D029144	191.0	0	transcriptional regulator	N/A
eggNOG-mapper	UHGV-1433210_14	457412.RSAG_00795	118.0	2.72e-32	sequence-specific DNA binding	N/A
COG	UHGV-1433210_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1433210_14	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1433210_15	PF13108	N/A	N/A	N/A	N/A
KOfam	UHGV-1433210_16	K07273	148.8	4.2039e-44	acm; lysozyme	N/A
PHROG	UHGV-1433210_16	phrog_291	141.0	9.99967e-42	endolysin	lysis
UniRef90	UHGV-1433210_16	UniRef90_A0A8D9UIP9	820.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-1433210_16	411470.RUMGNA_00451	196.0	0	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
Pfam	UHGV-1433210_16	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1433210_16	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1433210_16	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_18	phrog_2566	52.8	0.0000000000000053	N/A	unknown function
PHROG	UHGV-1433210_19	phrog_16267	133.1	0	N/A	unknown function
UniRef90	UHGV-1433210_19	UniRef90_A0A8D9PGP3	1729.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-1433210_19	1294142.CINTURNW_1706	244.0	0	Phage minor structural protein	N/A
COG	UHGV-1433210_19	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1433210_19	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_20	phrog_1401	53.7	0.0000000000000032	N/A	unknown function
structural_annotation	UHGV-1433210_20	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_21	phrog_1194	57.8	1.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-1433210_21	1232453.BAIF02000058_gene1638	62.0	0.000000000102	N/A	N/A
structural_annotation	UHGV-1433210_21	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_22	phrog_130	112.2	5.3e-33	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1433210_22	UniRef90_A0A8D9PG17	384.0	0	Prophage antirepressor	N/A
eggNOG-mapper	UHGV-1433210_22	658655.HMPREF0988_00912	248.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-1433210_22	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1433210_22	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1433210_22	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1433210_22	PF03374,PF02498,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1433210_23	PF07875	N/A	N/A	N/A	N/A
UniRef90	UHGV-1433210_24	UniRef90_UPI00174DD543	59.3	0.000000000221	CopG family transcriptional regulator	N/A
structural_annotation	UHGV-1433210_24	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-1433210_25	UniRef90_A0A8D9UIY0	132.0	1.15e-35	N/A	N/A
eggNOG-mapper	UHGV-1433210_25	411468.CLOSCI_01239	61.6	0.00000000177	N/A	N/A
Pfam	UHGV-1433210_25	PF16729	N/A	N/A	N/A	DUF5067
structural_annotation	UHGV-1433210_25	PF16729,MF_00791,TIGR04087,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_26	phrog_28918	158.6	0	N/A	unknown function
UniRef90	UHGV-1433210_26	UniRef90_A0A318EME6	364.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1433210_26	1298920.KI911353_gene2649	263.0	0	tape measure	N/A
COG	UHGV-1433210_26	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-1433210_28	phrog_36112	69.1	4.6e-20	N/A	unknown function
UniRef90	UHGV-1433210_28	UniRef90_A0A8D9PG71	306.0	0	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-1433210_28	1298920.KI911353_gene2651	117.0	2.21e-31	N/A	N/A
structural_annotation	UHGV-1433210_28	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1433210_29	476272.RUMHYD_01968	150.0	3.50325e-44	N/A	N/A
structural_annotation	UHGV-1433210_29	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1433210_30	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_31	phrog_374	202.7	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1433210_31	UniRef90_A0A4Q1SRF8	176.0	0	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1433210_31	397290.C810_05173	176.0	0	N/A	N/A
structural_annotation	UHGV-1433210_31	PF17375	N/A	N/A	N/A	N/A
UniRef90	UHGV-1433210_32	UniRef90_UPI000AABEC73	84.3	4.41e-20	LLM class flavin-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-1433210_32	1499683.CCFF01000017_gene2117	84.3	8.44e-21	N/A	N/A
structural_annotation	UHGV-1433210_32	PF20075,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1433210_33	UniRef90_UPI001BBD4500	62.4	0.00000000549	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1433210_33	476272.RUMHYD_01963	100.0	2.37e-24	N/A	N/A
eggNOG-mapper	UHGV-1433210_34	1298920.KI911353_gene2656	64.7	0.0000000000354	N/A	N/A
structural_annotation	UHGV-1433210_34	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_35	phrog_1129	75.4	4.8e-22	holin	lysis
UniRef90	UHGV-1433210_35	UniRef90_A0A8D9UII9	163.0	0	Holin	N/A
eggNOG-mapper	UHGV-1433210_35	411461.DORFOR_00721	103.0	6.57e-28	N/A	N/A
Pfam	UHGV-1433210_35	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1433210_35	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_36	phrog_1863	54.3	9.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-1433210_36	1232452.BAIB02000007_gene1606	53.5	0.000000212	N/A	N/A
eggNOG-mapper	UHGV-1433210_37	476272.RUMHYD_01948	50.8	0.00000186	N/A	N/A
UniRef90	UHGV-1433210_38	UniRef90_A0A416G2T8	52.0	0.000000476	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-1433210_38	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_39	phrog_29	165.1	0	major head protein	head and packaging
UniRef90	UHGV-1433210_39	UniRef90_UPI001D02C54B	669.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-1433210_39	1298920.KI911353_gene2660	348.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1433210_39	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1433210_39	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_40	phrog_909	54.5	0.0000000000000019	major head protein	head and packaging
eggNOG-mapper	UHGV-1433210_40	1298920.KI911353_gene2661	124.0	1.62e-35	N/A	N/A
UniRef90	UHGV-1433210_41	UniRef90_R6C0B6	120.0	4.35e-31	Phage capsid scaffolding protein	N/A
PHROG	UHGV-1433210_42	phrog_64	166.8	0	portal protein	head and packaging
UniRef90	UHGV-1433210_42	UniRef90_R7BGE4	756.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-1433210_42	1298920.KI911353_gene2663	461.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1433210_42	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1433210_42	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1433210_43	UniRef90_A0A8D9UIR9	157.0	0	RimK-related lysine biosynthesis protein	N/A
PHROG	UHGV-1433210_44	phrog_36	66.0	6.2e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1433210_44	UniRef90_A0A352SH29	85.9	2.82e-19	RNA polymerase subunit sigma-70 (Fragment)	N/A
eggNOG-mapper	UHGV-1433210_44	97138.C820_00772	68.9	0.000000000000581	sigma factor activity	N/A
Pfam	UHGV-1433210_44	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1433210_44	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1433210_44	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_45	phrog_38	150.2	1.26117e-44	terminase large subunit	head and packaging
UniRef90	UHGV-1433210_45	UniRef90_A0A8D9UIV2	1154.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1433210_45	397290.C810_01390	682.0	0	chromosome segregation	N/A
Pfam	UHGV-1433210_45	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
COG	UHGV-1433210_45	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1433210_45	PF17289,PF03237,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
UniRef90	UHGV-1433210_50	UniRef90_A0A8D9PGW1	127.0	1.82e-37	HTH psq-type domain-containing protein	N/A
structural_annotation	UHGV-1433210_50	PF05225,COG2886	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1433210_51	1397699.JNIS01000001_gene2447	110.0	5.32e-25	Conserved phage C-terminus (Phg_2220_C)	N/A
structural_annotation	UHGV-1433210_51	PF07106,NF040642,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_52	phrog_236	102.2	8.7e-30	nucleotide kinase	other
UniRef90	UHGV-1433210_52	UniRef90_A0A8D9PGN7	239.0	0	Nucelotide kinase	N/A
eggNOG-mapper	UHGV-1433210_52	1123263.AUKY01000015_gene1590	85.5	1.99e-20	N/A	N/A
Pfam	UHGV-1433210_52	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1433210_52	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-1433210_53	phrog_229	112.3	3.8e-33	MazG-like pyrophosphatase	other
UniRef90	UHGV-1433210_53	UniRef90_A0A8D9PGJ8	242.0	0	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-1433210_53	428125.CLOLEP_01391	98.6	6.3e-25	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-1433210_53	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-1433210_53	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1433210_53	PF03819,MF_01020,TIGR03188,COG1694	N/A	N/A	N/A	N/A
UniRef90	UHGV-1433210_54	UniRef90_A0A8D9UIS5	215.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1433210_54	658655.HMPREF0988_00895	140.0	9.81e-40	N/A	N/A
eggNOG-mapper	UHGV-1433210_57	658655.HMPREF0988_00903	48.1	0.0000015	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1433210	Yes	40,300	36	70	1