vOTU vOTU-096813

vOTU: vOTU-096813

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-096813
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-02146 → vOTU-096813
Host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1514020
Biosample ID	SAMEA2738172
Genome length (bp)	26,462 bps
CheckV completeness	76.37% (Medium-quality)
CDS count	41
CDS density	96.13%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Staphylococcales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	Total connections	1	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 76.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1514020_1	K04763	105.8	5.6e-31	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1514020_1	phrog_216	162.9	0	integrase	integration and excision
UniRef90	UHGV-1514020_1	UniRef90_U2Q4Z2	353.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-1514020_1	1321820.HMPREF1983_00948	353.0	0	Phage integrase family	N/A
Pfam	UHGV-1514020_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1514020_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1514020_1	PF00589,MF_02055,NF040815,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-1514020_2	K03111	128.7	7.6e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1514020_2	phrog_44	147.0	1.09301e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1514020_2	UniRef90_A0A2N6SER4	197.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1514020_2	1321820.HMPREF1983_00947	170.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1514020_2	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1514020_2	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1514020_2	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1514020_2	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1514020_2	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_9	phrog_98	60.4	3.3e-17	N/A	unknown function
UniRef90	UHGV-1514020_9	UniRef90_UPI0019591376	153.0	1.4013e-45	YopX family protein	N/A
eggNOG-mapper	UHGV-1514020_9	562981.HMPREF0428_00992	74.3	0.00000000000000214	YopX protein	N/A
Pfam	UHGV-1514020_9	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1514020_9	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1514020_12	PF10957	N/A	N/A	N/A	N/A
UniRef90	UHGV-1514020_16	UniRef90_UPI001A470AE5	138.0	4.34e-38	med21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1514020_16	562981.HMPREF0428_01830	133.0	2.88e-37	N/A	N/A
PHROG	UHGV-1514020_18	phrog_12650	40.2	0.000000000039	N/A	unknown function
structural_annotation	UHGV-1514020_18	NF010673	N/A	N/A	N/A	N/A
UniRef90	UHGV-1514020_19	UniRef90_A0A2X4N3V1	176.0	0	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-1514020_19	PF08281,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_20	phrog_338	102.5	5.3e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1514020_20	UniRef90_A0A2N6SCF6	211.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1514020_20	1321820.HMPREF1983_00938	186.0	0	HNH endonuclease	N/A
Pfam	UHGV-1514020_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1514020_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1514020_20	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_21	phrog_104	299.3	0	portal protein	head and packaging
UniRef90	UHGV-1514020_21	UniRef90_A0A4J1ZT89	706.0	0	Gp34	N/A
eggNOG-mapper	UHGV-1514020_21	1321820.HMPREF1983_00937	850.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1514020_21	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_22	phrog_2494	329.2	0	minor head protein	head and packaging
UniRef90	UHGV-1514020_22	UniRef90_U2RW86	620.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1514020_22	1321820.HMPREF1983_00936	620.0	0	N/A	N/A
Pfam	UHGV-1514020_22	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
structural_annotation	UHGV-1514020_22	PF18451	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_23	phrog_17688	490.6	0	N/A	unknown function
UniRef90	UHGV-1514020_23	UniRef90_U2S4W8	890.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1514020_23	1321820.HMPREF1983_00935	890.0	0	phage terminase, large subunit	N/A
COG	UHGV-1514020_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1514020_23	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_24	phrog_233	121.3	1.1e-35	head scaffolding protein	head and packaging
UniRef90	UHGV-1514020_24	UniRef90_A0A2N6SCG6	230.0	0	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-1514020_24	1321820.HMPREF1983_00934	193.0	0	N/A	N/A
structural_annotation	UHGV-1514020_24	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_25	phrog_32396	166.8	0	N/A	unknown function
UniRef90	UHGV-1514020_25	UniRef90_A0A2N6SCF3	521.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1514020_25	1214184.ALKY01000039_gene918	502.0	0	Phage capsid family	N/A
Pfam	UHGV-1514020_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1514020_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-1514020_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_27	phrog_137	107.1	1.1e-31	head-tail adaptor Ad1	connector
UniRef90	UHGV-1514020_27	UniRef90_U2RW81	228.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1514020_27	1321820.HMPREF1983_00931	228.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1514020_27	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1514020_27	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_28	phrog_501	96.8	1.7e-28	head closure Hc1	connector
UniRef90	UHGV-1514020_28	UniRef90_A0A139QHM6	162.0	0	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1514020_28	1321820.HMPREF1983_00930	198.0	0	N/A	N/A
structural_annotation	UHGV-1514020_28	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_29	phrog_387	82.0	5.3e-24	neck protein	connector
UniRef90	UHGV-1514020_29	UniRef90_A0A380KNT4	82.8	2.68e-19	N/A	N/A
eggNOG-mapper	UHGV-1514020_29	1321820.HMPREF1983_00929	105.0	4.32e-29	N/A	N/A
PHROG	UHGV-1514020_30	phrog_123	64.7	1.6e-18	tail terminator	connector
UniRef90	UHGV-1514020_30	UniRef90_A0A0E4CTM5	129.0	1.68e-36	N/A	N/A
eggNOG-mapper	UHGV-1514020_30	1321820.HMPREF1983_00928	175.0	0	N/A	N/A
structural_annotation	UHGV-1514020_30	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_31	phrog_117	175.1	0	major tail protein	tail
UniRef90	UHGV-1514020_31	UniRef90_U2QNN1	325.0	0	Prophage LambdaSa1, structural protein	N/A
eggNOG-mapper	UHGV-1514020_31	1321820.HMPREF1983_00927	325.0	0	domain, Protein	N/A
COG	UHGV-1514020_31	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1514020_31	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_32	phrog_1526	104.6	5.2e-31	N/A	unknown function
UniRef90	UHGV-1514020_32	UniRef90_A0A4U9XM96	96.7	2.02e-24	N/A	N/A
eggNOG-mapper	UHGV-1514020_32	1321820.HMPREF1983_00926	129.0	2.82e-38	N/A	N/A
PHROG	UHGV-1514020_33	phrog_1633	173.5	0	N/A	unknown function
UniRef90	UHGV-1514020_33	UniRef90_A0A139NAW5	157.0	0	N/A	N/A
eggNOG-mapper	UHGV-1514020_33	1321820.HMPREF1983_00925	184.0	0	N/A	N/A
Pfam	UHGV-1514020_33	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1514020_33	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_34	phrog_58	389.1	0	tail length tape measure protein	tail
UniRef90	UHGV-1514020_34	UniRef90_A0A2N6SDE9	975.0	0	PblA	N/A
eggNOG-mapper	UHGV-1514020_34	1321820.HMPREF1983_00924	926.0	0	Phage tail tape measure protein	N/A
COG	UHGV-1514020_34	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1514020_34	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_35	phrog_33	55.9	0.0000000000000011	distal tail protein Dit	tail
UniRef90	UHGV-1514020_35	UniRef90_A0A2N6SFF3	333.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1514020_35	1321820.HMPREF1983_00923	299.0	0	tail component	N/A
COG	UHGV-1514020_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1514020_35	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_36	phrog_2270	474.5	0	N/A	unknown function
UniRef90	UHGV-1514020_36	UniRef90_A0A420YQM7	964.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1514020_36	1321820.HMPREF1983_00922	511.0	0	N/A	N/A
Pfam	UHGV-1514020_36	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-1514020_36	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1514020_36	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1514020_36	PF14594,PF03422,PF17994,MF_00813,TIGR01665,NF033675,TIGR03511,TIGR02961,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_37	phrog_1060	63.3	2e-18	N/A	unknown function
UniRef90	UHGV-1514020_37	UniRef90_A0A420YQX1	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-1514020_37	1321820.HMPREF1983_00919	55.8	0.0000000927	N/A	N/A
Pfam	UHGV-1514020_37	PF07104	N/A	N/A	N/A	DUF1366
structural_annotation	UHGV-1514020_37	PF07104,TIGR00638	N/A	N/A	N/A	N/A
PHROG	UHGV-1514020_39	phrog_4257	92.9	2.4e-27	N/A	unknown function
UniRef90	UHGV-1514020_39	UniRef90_A0A139QI86	62.0	0.000000000902	N/A	N/A
eggNOG-mapper	UHGV-1514020_39	562981.HMPREF0428_00966	167.0	0	N/A	N/A
PHROG	UHGV-1514020_40	phrog_1129	49.1	0.000000000000027	holin	lysis
Pfam	UHGV-1514020_40	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
PHROG	UHGV-1514020_41	phrog_1309	240.5	0	endolysin	lysis
UniRef90	UHGV-1514020_41	UniRef90_A0A133ZZY6	441.0	0	CHAP domain protein	N/A
eggNOG-mapper	UHGV-1514020_41	1321820.HMPREF1983_00914	379.0	0	CHAP domain	N/A
Pfam	UHGV-1514020_41	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1514020_41	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-1514020_41	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-1514020_41	PF08460,PF05382,TIGR02219,COG0791	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1514020	Yes	26,462	33	76	1